Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00369 * 2 1 4 4 H 1.48499 * 109.46917 * 269.99547 * 3 2 1 5 5 H 1.48491 * 109.47221 * 29.99777 * 3 2 1 6 6 H 1.48500 * 109.46735 * 149.99955 * 3 2 1 7 7 C 1.38815 * 119.99312 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99413 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64753 * 359.95246 * 9 7 2 11 11 C 1.54328 * 107.26842 * 181.09857 * 10 9 7 12 12 H 1.08997 * 110.71551 * 263.83034 * 11 10 9 13 13 O 1.42896 * 110.71802 * 140.55853 * 11 10 9 14 14 C 1.55158 * 102.94231 * 22.19665 * 11 10 9 15 15 H 1.08995 * 111.03665 * 82.58757 * 14 11 10 16 16 C 1.53004 * 110.99976 * 206.42513 * 14 11 10 17 17 N 1.46502 * 109.47008 * 178.64942 * 16 14 11 18 18 C 1.34773 * 120.00022 * 180.27171 * 17 16 14 19 19 O 1.21586 * 120.00011 * 359.72726 * 18 17 16 20 20 C 1.47555 * 119.99816 * 179.72387 * 18 17 16 21 21 C 1.38693 * 120.38969 * 354.03644 * 20 18 17 22 22 C 1.38972 * 120.53651 * 179.97438 * 21 20 18 23 23 C 1.36214 * 121.23686 * 0.02562 * 22 21 20 24 24 C 1.40706 * 120.20081 * 359.97438 * 23 22 21 25 25 N 1.33689 * 120.94755 * 180.02562 * 24 23 22 26 26 C 1.31074 * 121.34310 * 179.30592 * 25 24 23 27 27 C 1.39343 * 121.70661 * 0.61601 * 26 25 24 28 28 C 1.36676 * 119.86513 * 359.58351 * 27 26 25 29 29 C 1.40469 * 118.16890 * 0.02562 * 28 27 26 30 30 C 1.47428 * 125.64642 * 180.02562 * 9 7 2 31 31 H 0.97003 * 119.99362 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.87931 * 300.51512 * 10 9 7 33 33 H 1.08994 * 109.88098 * 61.52544 * 10 9 7 34 34 H 0.96701 * 114.00426 * 66.47104 * 13 11 10 35 35 H 1.08997 * 109.47383 * 58.65022 * 16 14 11 36 36 H 1.08998 * 109.46595 * 298.64561 * 16 14 11 37 37 H 0.97003 * 119.99698 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.72889 * 359.97438 * 21 20 18 39 39 H 1.08001 * 119.38134 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.89375 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.14256 * 180.17822 * 26 25 24 42 42 H 1.07995 * 120.06340 * 179.61062 * 27 26 25 43 43 H 1.07994 * 120.91396 * 180.02562 * 28 27 26 44 44 H 1.08994 * 110.36884 * 36.99506 * 30 9 7 45 45 H 1.09000 * 110.35890 * 274.66768 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4399 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1378 -2.5327 0.0010 11 6 -0.4488 -4.0440 0.0291 12 1 -0.6322 -4.4187 -0.9779 13 8 -1.5630 -4.3151 0.8817 14 6 0.8517 -4.6556 0.6140 15 1 0.8573 -4.5954 1.7023 16 6 1.0365 -6.1007 0.1466 17 7 2.2878 -6.6338 0.6910 18 6 2.6632 -7.8963 0.4054 19 8 1.9609 -8.5945 -0.3000 20 6 3.9265 -8.4312 0.9488 21 6 4.7931 -7.6066 1.6507 22 6 5.9835 -8.1073 2.1643 23 6 6.3323 -9.4130 1.9944 24 6 5.4839 -10.2863 1.2891 25 7 5.8112 -11.5706 1.1140 26 6 5.0205 -12.3940 0.4700 27 6 3.8093 -11.9712 -0.0739 28 6 3.4176 -10.6694 0.0667 29 6 4.2653 -9.7935 0.7649 30 6 1.9332 -3.7312 0.0016 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5575 -2.0514 0.8843 33 1 -0.5550 -2.0827 -0.8998 34 1 -2.4007 -3.9540 0.5610 35 1 1.0731 -6.1285 -0.9424 36 1 0.2006 -6.7058 0.4977 37 1 2.8479 -6.0769 1.2541 38 1 4.5409 -6.5671 1.7993 39 1 6.6444 -7.4487 2.7082 40 1 7.2625 -9.7792 2.4032 41 1 5.3189 -13.4252 0.3517 42 1 3.1811 -12.6710 -0.6050 43 1 2.4821 -10.3236 -0.3475 44 1 2.8326 -3.7401 0.6172 45 1 2.1661 -4.0429 -1.0166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958299798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = 6.231222 kcal Electronic energy + Delta-G solvation = -28654.683484 eV Core-core repulsion = 24638.041345 eV Total energy + Delta-G solvation = -4016.642138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.30320 -39.63884 -38.28757 -37.18247 -35.31281 -34.79890 -33.54233 -32.38970 -30.84175 -30.78490 -29.44328 -27.62656 -25.79180 -24.86072 -23.99281 -23.66482 -22.73719 -20.97437 -20.32164 -19.90091 -18.49482 -17.87369 -17.14386 -16.99693 -16.77714 -16.24048 -15.91050 -15.54188 -15.09959 -15.02902 -14.58554 -14.46445 -14.12856 -14.06927 -13.79671 -13.41289 -13.24760 -12.97990 -12.71798 -12.50609 -12.38188 -12.14756 -11.94069 -11.65996 -11.52450 -11.28680 -11.03962 -10.86346 -10.72820 -10.65424 -10.40194 -10.10792 -9.93365 -9.88135 -9.45273 -9.25982 -9.15942 -9.10263 -8.71410 -8.54667 -6.96537 -5.81378 -3.16172 -0.13374 0.52977 1.50353 2.39657 2.98519 3.03464 3.34139 3.39076 3.41182 3.87932 3.97571 4.30879 4.39153 4.42191 4.51728 4.61129 4.66399 4.78723 4.84134 4.94054 5.04966 5.11868 5.17035 5.36591 5.43738 5.48443 5.53975 5.60850 5.68145 5.78594 5.83112 5.94133 5.94686 5.97219 6.05822 6.12902 6.25391 6.28417 6.37529 6.45281 6.52097 6.73984 7.33240 7.36622 7.43410 7.61400 7.69070 8.05635 8.12930 8.14156 9.09922 9.70521 10.34327 11.30187 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.002364 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.949802 B =11840.185284 C =13100.474192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.566 6.566 14 C -0.109 4.109 15 H 0.090 0.910 16 C 0.133 3.867 17 N -0.713 5.713 18 C 0.560 3.440 19 O -0.538 6.538 20 C -0.110 4.110 21 C -0.073 4.073 22 C -0.110 4.110 23 C -0.068 4.068 24 C 0.118 3.882 25 N -0.479 5.479 26 C 0.131 3.869 27 C -0.181 4.181 28 C -0.059 4.059 29 C -0.067 4.067 30 C 0.141 3.859 31 H 0.253 0.747 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.377 0.623 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.402 0.598 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.179 0.821 44 H 0.042 0.958 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 -20.438 2.631 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.371 6.371 14 C -0.129 4.129 15 H 0.108 0.892 16 C 0.009 3.991 17 N -0.364 5.364 18 C 0.348 3.652 19 O -0.418 6.418 20 C -0.114 4.114 21 C -0.092 4.092 22 C -0.129 4.129 23 C -0.087 4.087 24 C -0.004 4.004 25 N -0.187 5.187 26 C -0.041 4.041 27 C -0.201 4.201 28 C -0.085 4.085 29 C -0.069 4.069 30 C 0.015 3.985 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.223 0.777 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.238 0.762 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.176 0.824 42 H 0.156 0.844 43 H 0.196 0.804 44 H 0.060 0.940 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.034 -21.157 2.874 22.813 hybrid contribution -0.469 1.810 -0.452 1.923 sum 7.565 -19.347 2.423 20.914 Atomic orbital electron populations 1.69941 1.04951 1.25222 1.56802 1.24827 0.95768 0.97824 1.01955 0.86085 0.78576 0.83271 0.77616 1.21527 1.21610 1.20624 1.19056 0.90450 0.82209 1.44254 0.90243 1.44304 1.01325 0.99911 1.87386 1.21837 0.85181 0.88501 1.01887 1.23111 0.85057 0.97908 0.91594 0.92494 1.86418 1.18894 1.80141 1.51680 1.22622 0.96319 0.92208 1.01734 0.89157 1.21443 0.85029 0.93779 0.98800 1.45981 1.24860 1.13414 1.52129 1.18066 0.84965 0.81792 0.80421 1.90552 1.55027 1.57450 1.38752 1.19904 0.95936 0.93648 1.01942 1.21520 0.93516 0.99784 0.94379 1.20863 0.96706 0.95569 0.99807 1.21010 0.98991 0.92520 0.96144 1.18855 0.92538 0.91247 0.97712 1.68054 1.32685 1.02603 1.15389 1.23012 0.90271 0.99289 0.91544 1.22066 0.98436 0.97303 1.02246 1.22681 1.00678 0.92401 0.92702 1.18634 0.95533 0.93418 0.99340 1.21609 0.94008 0.85866 0.97050 0.93631 0.92389 0.93569 0.77652 0.91048 0.90846 0.76177 0.84642 0.84313 0.84299 0.82403 0.84396 0.80425 0.94004 0.95862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.31 55.49 0.57 -25.71 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.23 -6.21 10.28 -15.06 -0.15 -6.37 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.63 3.39 -170.08 -0.58 -15.21 16 10 C 0.15 3.49 5.15 -3.06 -0.02 3.48 16 11 C 0.08 1.49 3.80 -24.89 -0.09 1.40 16 12 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 13 O -0.57 -9.46 13.39 -35.23 -0.47 -9.94 16 14 C -0.11 -1.78 2.83 -88.48 -0.25 -2.03 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 16 C 0.13 1.87 5.12 -4.04 -0.02 1.85 16 17 N -0.71 -8.82 5.36 -61.34 -0.33 -9.14 16 18 C 0.56 7.49 7.72 -12.46 -0.10 7.39 16 19 O -0.54 -8.43 13.41 5.29 0.07 -8.36 16 20 C -0.11 -1.31 5.90 -104.65 -0.62 -1.92 16 21 C -0.07 -0.68 9.51 -39.14 -0.37 -1.05 16 22 C -0.11 -0.89 9.92 -40.04 -0.40 -1.29 16 23 C -0.07 -0.64 9.96 -39.38 -0.39 -1.03 16 24 C 0.12 1.39 6.60 -84.88 -0.56 0.83 16 25 N -0.48 -5.54 10.34 -10.99 -0.11 -5.65 16 26 C 0.13 1.22 11.15 -17.46 -0.19 1.02 16 27 C -0.18 -1.69 10.04 -39.73 -0.40 -2.09 16 28 C -0.06 -0.71 9.29 -39.31 -0.37 -1.07 16 29 C -0.07 -0.83 5.76 -106.53 -0.61 -1.44 16 30 C 0.14 2.66 6.41 -2.54 -0.02 2.64 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 32 H 0.06 1.52 7.29 -51.93 -0.38 1.14 16 33 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 34 H 0.38 4.86 9.12 45.56 0.42 5.27 16 35 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.40 4.20 6.41 -40.82 -0.26 3.94 16 38 H 0.14 0.97 6.43 -52.49 -0.34 0.63 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.18 2.29 4.97 -52.51 -0.26 2.03 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -33.64 370.65 -9.91 -43.55 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.97 Total: 8.39 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -4.66 Total: 0.02 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.45 Total: -55.72 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.40 Total: -18.29 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.64 -9.91 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958299798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.781 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds