Wall clock time and date at job start Sat Apr 11 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00369 * 2 1 4 4 H 1.48499 * 109.46917 * 269.99547 * 3 2 1 5 5 H 1.48491 * 109.47221 * 29.99777 * 3 2 1 6 6 H 1.48500 * 109.46735 * 149.99955 * 3 2 1 7 7 C 1.38815 * 119.99312 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99413 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64753 * 359.95246 * 9 7 2 11 11 C 1.54328 * 107.26842 * 181.09857 * 10 9 7 12 12 H 1.08997 * 110.71551 * 263.83034 * 11 10 9 13 13 O 1.42896 * 110.71802 * 140.55853 * 11 10 9 14 14 C 1.55158 * 102.94231 * 22.19665 * 11 10 9 15 15 H 1.08995 * 111.03665 * 82.58757 * 14 11 10 16 16 C 1.53004 * 110.99976 * 206.42513 * 14 11 10 17 17 N 1.46502 * 109.47008 * 178.64942 * 16 14 11 18 18 C 1.34773 * 120.00022 * 180.27171 * 17 16 14 19 19 O 1.21586 * 120.00011 * 359.72726 * 18 17 16 20 20 C 1.47555 * 119.99816 * 179.72387 * 18 17 16 21 21 C 1.38693 * 120.38969 * 354.03644 * 20 18 17 22 22 C 1.38972 * 120.53651 * 179.97438 * 21 20 18 23 23 C 1.36214 * 121.23686 * 0.02562 * 22 21 20 24 24 C 1.40706 * 120.20081 * 359.97438 * 23 22 21 25 25 N 1.33689 * 120.94755 * 180.02562 * 24 23 22 26 26 C 1.31074 * 121.34310 * 179.30592 * 25 24 23 27 27 C 1.39343 * 121.70661 * 0.61601 * 26 25 24 28 28 C 1.36676 * 119.86513 * 359.58351 * 27 26 25 29 29 C 1.40469 * 118.16890 * 0.02562 * 28 27 26 30 30 C 1.47428 * 125.64642 * 180.02562 * 9 7 2 31 31 H 0.97003 * 119.99362 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.87931 * 300.51512 * 10 9 7 33 33 H 1.08994 * 109.88098 * 61.52544 * 10 9 7 34 34 H 0.96701 * 114.00426 * 66.47104 * 13 11 10 35 35 H 1.08997 * 109.47383 * 58.65022 * 16 14 11 36 36 H 1.08998 * 109.46595 * 298.64561 * 16 14 11 37 37 H 0.97003 * 119.99698 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.72889 * 359.97438 * 21 20 18 39 39 H 1.08001 * 119.38134 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.89375 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.14256 * 180.17822 * 26 25 24 42 42 H 1.07995 * 120.06340 * 179.61062 * 27 26 25 43 43 H 1.07994 * 120.91396 * 180.02562 * 28 27 26 44 44 H 1.08994 * 110.36884 * 36.99506 * 30 9 7 45 45 H 1.09000 * 110.35890 * 274.66768 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4399 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1378 -2.5327 0.0010 11 6 -0.4488 -4.0440 0.0291 12 1 -0.6322 -4.4187 -0.9779 13 8 -1.5630 -4.3151 0.8817 14 6 0.8517 -4.6556 0.6140 15 1 0.8573 -4.5954 1.7023 16 6 1.0365 -6.1007 0.1466 17 7 2.2878 -6.6338 0.6910 18 6 2.6632 -7.8963 0.4054 19 8 1.9609 -8.5945 -0.3000 20 6 3.9265 -8.4312 0.9488 21 6 4.7931 -7.6066 1.6507 22 6 5.9835 -8.1073 2.1643 23 6 6.3323 -9.4130 1.9944 24 6 5.4839 -10.2863 1.2891 25 7 5.8112 -11.5706 1.1140 26 6 5.0205 -12.3940 0.4700 27 6 3.8093 -11.9712 -0.0739 28 6 3.4176 -10.6694 0.0667 29 6 4.2653 -9.7935 0.7649 30 6 1.9332 -3.7312 0.0016 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5575 -2.0514 0.8843 33 1 -0.5550 -2.0827 -0.8998 34 1 -2.4007 -3.9540 0.5610 35 1 1.0731 -6.1285 -0.9424 36 1 0.2006 -6.7058 0.4977 37 1 2.8479 -6.0769 1.2541 38 1 4.5409 -6.5671 1.7993 39 1 6.6444 -7.4487 2.7082 40 1 7.2625 -9.7792 2.4032 41 1 5.3189 -13.4252 0.3517 42 1 3.1811 -12.6710 -0.6050 43 1 2.4821 -10.3236 -0.3475 44 1 2.8326 -3.7401 0.6172 45 1 2.1661 -4.0429 -1.0166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958299798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:35 Heat of formation + Delta-G solvation = -18.277200 kcal Electronic energy + Delta-G solvation = -28655.746248 eV Core-core repulsion = 24638.041345 eV Total energy + Delta-G solvation = -4017.704903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10771 -40.67970 -39.72610 -37.92961 -36.66516 -36.22465 -34.33545 -34.07495 -32.00173 -31.54612 -30.74924 -29.26043 -27.32080 -25.88552 -25.19744 -24.43209 -23.82171 -22.31235 -21.75054 -21.21232 -19.36305 -18.87714 -18.66242 -18.20150 -17.81599 -17.26423 -17.00486 -16.81013 -16.51178 -15.92123 -15.76523 -15.67745 -15.33324 -15.17007 -14.76260 -14.66955 -14.40983 -14.11272 -14.02790 -13.79751 -13.69647 -13.23525 -13.10303 -13.05408 -12.73328 -12.71802 -12.44844 -12.32688 -12.28863 -11.91451 -11.79256 -11.52697 -11.50234 -11.26044 -10.84049 -10.73245 -10.30048 -10.22467 -9.82616 -9.32691 -8.93647 -7.86423 -5.22761 -0.90215 -0.20096 0.67099 1.47178 1.48461 1.57010 1.63450 1.97706 2.16144 2.48157 3.10042 3.22606 3.30919 3.34083 3.47875 3.55431 3.71654 3.76163 3.81092 3.85760 3.89312 4.07216 4.14557 4.17200 4.39746 4.40538 4.43744 4.48153 4.60913 4.72565 4.78110 4.79565 4.87493 4.94922 5.02070 5.09320 5.24364 5.28588 5.31691 5.39798 5.43413 5.48783 5.57183 5.71555 5.79005 6.16502 6.40518 6.85931 6.88211 7.07031 7.07897 7.74141 8.37238 9.23740 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.002364 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.949802 B =11840.185284 C =13100.474192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.625 5.625 10 C 0.160 3.840 11 C 0.097 3.903 12 H 0.075 0.925 13 O -0.569 6.569 14 C -0.090 4.090 15 H 0.088 0.912 16 C 0.147 3.853 17 N -0.706 5.706 18 C 0.560 3.440 19 O -0.567 6.567 20 C -0.137 4.137 21 C -0.061 4.061 22 C -0.105 4.105 23 C -0.070 4.070 24 C 0.094 3.906 25 N -0.497 5.497 26 C 0.128 3.872 27 C -0.171 4.171 28 C -0.088 4.088 29 C -0.085 4.085 30 C 0.139 3.861 31 H 0.246 0.754 32 H 0.019 0.981 33 H 0.012 0.988 34 H 0.393 0.607 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.413 0.587 38 H 0.158 0.842 39 H 0.174 0.826 40 H 0.157 0.843 41 H 0.194 0.806 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.060 0.940 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.423 -21.687 3.330 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.107 0.893 9 N -0.352 5.352 10 C 0.034 3.966 11 C 0.036 3.964 12 H 0.093 0.907 13 O -0.377 6.377 14 C -0.110 4.110 15 H 0.106 0.894 16 C 0.023 3.977 17 N -0.358 5.358 18 C 0.349 3.651 19 O -0.449 6.449 20 C -0.141 4.141 21 C -0.080 4.080 22 C -0.124 4.124 23 C -0.089 4.089 24 C -0.026 4.026 25 N -0.205 5.205 26 C -0.045 4.045 27 C -0.190 4.190 28 C -0.113 4.113 29 C -0.088 4.088 30 C 0.014 3.986 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.030 0.970 34 H 0.243 0.757 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.251 0.749 38 H 0.175 0.825 39 H 0.192 0.808 40 H 0.175 0.825 41 H 0.211 0.789 42 H 0.183 0.817 43 H 0.180 0.820 44 H 0.079 0.921 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.159 -22.426 3.585 24.879 hybrid contribution -1.095 2.121 -0.666 2.478 sum 9.065 -20.305 2.919 22.428 Atomic orbital electron populations 1.70164 1.06347 1.25279 1.58344 1.25673 0.96630 1.01148 1.02650 0.85075 0.77775 0.79083 0.77391 1.21459 1.22389 1.19001 1.19494 0.91183 0.83402 1.42824 0.89326 1.44612 1.02054 1.01336 1.87200 1.21599 0.84763 0.91784 0.98416 1.22888 0.86259 0.94217 0.93011 0.90692 1.86389 1.19523 1.79938 1.51808 1.22420 0.94377 0.92927 1.01276 0.89375 1.21159 0.85900 0.92000 0.98602 1.45827 1.24394 1.13384 1.52167 1.18337 0.85302 0.81575 0.79894 1.90546 1.56067 1.58182 1.40089 1.19830 0.96068 0.94046 1.04115 1.21860 0.93138 1.00448 0.92546 1.21241 0.96507 0.95529 0.99125 1.21336 0.99242 0.92849 0.95425 1.19201 0.92902 0.91908 0.98631 1.68103 1.33443 1.02827 1.16165 1.23606 0.89825 1.00549 0.90475 1.22383 0.98653 0.96754 1.01238 1.22657 1.00650 0.93790 0.94236 1.18837 0.96115 0.93943 0.99892 1.21793 0.95203 0.83754 0.97877 0.94447 0.96263 0.96964 0.75747 0.91267 0.90936 0.74944 0.82451 0.80832 0.82549 0.78937 0.81674 0.81997 0.92131 0.95225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.04 10.31 21.65 0.22 -55.82 16 2 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 3 Si 0.98 44.48 29.55 68.60 2.03 46.51 16 4 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.24 -12.87 10.28 84.03 0.86 -12.00 16 8 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.62 -30.40 3.39 -692.00 -2.35 -32.75 16 10 C 0.16 7.58 5.15 86.73 0.45 8.03 16 11 C 0.10 3.39 3.80 31.78 0.12 3.51 16 12 H 0.08 2.40 8.04 -2.39 -0.02 2.38 16 13 O -0.57 -18.51 13.39 -148.98 -1.99 -20.51 16 14 C -0.09 -2.82 2.83 -9.41 -0.03 -2.85 16 15 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 16 C 0.15 3.91 5.12 86.38 0.44 4.36 16 17 N -0.71 -16.34 5.36 -466.25 -2.50 -18.83 16 18 C 0.56 14.65 7.72 86.70 0.67 15.32 16 19 O -0.57 -17.95 13.41 -3.99 -0.05 -18.00 16 20 C -0.14 -3.12 5.90 -19.88 -0.12 -3.24 16 21 C -0.06 -0.99 9.51 22.55 0.21 -0.78 16 22 C -0.10 -1.39 9.92 21.97 0.22 -1.17 16 23 C -0.07 -1.17 9.96 22.40 0.22 -0.95 16 24 C 0.09 2.14 6.60 40.27 0.27 2.40 16 25 N -0.50 -10.87 10.34 -188.68 -1.95 -12.82 16 26 C 0.13 2.16 11.15 85.07 0.95 3.11 16 27 C -0.17 -3.02 10.04 22.17 0.22 -2.80 16 28 C -0.09 -2.11 9.29 22.45 0.21 -1.90 16 29 C -0.09 -2.10 5.76 -21.10 -0.12 -2.22 16 30 C 0.14 5.02 6.41 86.85 0.56 5.58 16 31 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.02 1.05 7.29 -2.39 -0.02 1.03 16 33 H 0.01 0.65 7.50 -2.39 -0.02 0.63 16 34 H 0.39 9.86 9.12 -74.06 -0.68 9.19 16 35 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.41 7.63 6.41 -92.71 -0.59 7.04 16 38 H 0.16 1.74 6.43 -2.91 -0.02 1.72 16 39 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 41 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.16 4.38 4.97 -3.16 -0.02 4.36 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 Total: -1.00 -75.39 370.65 -1.22 -76.60 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.22 Total: 24.53 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 5.60 Total: 11.09 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -6.57 Total: -120.21 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -2.05 Total: -38.51 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -75.39 -1.22 -76.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958299798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.324 kcal (2) G-P(sol) polarization free energy of solvation -75.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds