Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00356 * 2 1 4 4 H 1.48507 * 109.46854 * 269.99946 * 3 2 1 5 5 H 1.48505 * 109.47326 * 29.99562 * 3 2 1 6 6 H 1.48496 * 109.47234 * 149.99804 * 3 2 1 7 7 C 1.38812 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.47747 * 125.82503 * 359.90517 * 9 7 2 11 11 C 1.54905 * 104.84576 * 155.82832 * 10 9 7 12 12 H 1.09004 * 111.04180 * 155.18031 * 11 10 9 13 13 O 1.42894 * 111.00777 * 279.02451 * 11 10 9 14 14 C 1.55166 * 101.58007 * 37.09689 * 11 10 9 15 15 H 1.08997 * 110.87535 * 82.93177 * 14 11 10 16 16 C 1.52994 * 110.71679 * 206.13644 * 14 11 10 17 17 N 1.46508 * 109.46892 * 179.97438 * 16 14 11 18 18 C 1.34779 * 120.00092 * 180.02562 * 17 16 14 19 19 O 1.21545 * 119.99581 * 359.97438 * 18 17 16 20 20 C 1.47944 * 119.99919 * 180.02562 * 18 17 16 21 21 N 1.32198 * 120.16001 * 354.13208 * 20 18 17 22 22 C 1.32025 * 122.68219 * 179.75003 * 21 20 18 23 23 C 1.36686 * 122.02765 * 0.54178 * 22 21 20 24 24 C 1.40533 * 118.84654 * 359.74229 * 23 22 21 25 25 C 1.40328 * 122.22530 * 179.97438 * 24 23 22 26 26 C 1.36206 * 119.45517 * 180.02562 * 25 24 23 27 27 C 1.39381 * 121.00312 * 0.02562 * 26 25 24 28 28 C 1.36263 * 121.07817 * 359.96342 * 27 26 25 29 29 C 1.40091 * 119.53788 * 0.04145 * 28 27 26 30 30 C 1.47023 * 125.64971 * 179.97438 * 9 7 2 31 31 H 0.97005 * 119.99781 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.29312 * 37.02294 * 10 9 7 33 33 H 1.09004 * 110.52725 * 274.75902 * 10 9 7 34 34 H 0.96700 * 113.99866 * 292.19181 * 13 11 10 35 35 H 1.08999 * 109.47487 * 299.97352 * 16 14 11 36 36 H 1.08996 * 109.47859 * 59.97615 * 16 14 11 37 37 H 0.97000 * 119.99594 * 359.97438 * 17 16 14 38 38 H 1.07997 * 118.98772 * 180.26107 * 22 21 20 39 39 H 1.07998 * 120.57964 * 179.76232 * 23 22 21 40 40 H 1.08001 * 120.27067 * 359.97438 * 25 24 23 41 41 H 1.08000 * 119.49621 * 179.97438 * 26 25 24 42 42 H 1.07994 * 119.46572 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.22911 * 180.02562 * 28 27 26 44 44 H 1.09001 * 109.88266 * 61.60501 * 30 9 7 45 45 H 1.09002 * 109.87936 * 300.59404 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1444 -2.5379 0.0020 11 6 -0.4013 -3.9368 -0.6117 12 1 -1.3578 -4.3403 -0.2794 13 8 -0.3361 -3.8901 -2.0384 14 6 0.7806 -4.7551 -0.0275 15 1 0.5508 -5.1048 0.9790 16 6 1.1280 -5.9319 -0.9412 17 7 2.2455 -6.6841 -0.3651 18 6 2.7263 -7.7703 -1.0020 19 8 2.2325 -8.1260 -2.0541 20 6 3.8544 -8.5302 -0.4199 21 7 4.4685 -8.0828 0.6620 22 6 5.4766 -8.7227 1.2254 23 6 5.9651 -9.8945 0.7191 24 6 5.3705 -10.4352 -0.4338 25 6 5.8154 -11.6332 -1.0135 26 6 5.1979 -12.1058 -2.1318 27 6 4.1319 -11.4175 -2.7086 28 6 3.6745 -10.2516 -2.1716 29 6 4.2848 -9.7346 -1.0216 30 6 1.9316 -3.7275 0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6039 -1.7638 -0.6127 33 1 -0.5322 -2.4930 1.0197 34 1 -1.0544 -3.3894 -2.4488 35 1 0.2612 -6.5857 -1.0373 36 1 1.4111 -5.5572 -1.9248 37 1 2.6398 -6.4000 0.4744 38 1 5.9321 -8.3050 2.1111 39 1 6.7935 -10.3965 1.1969 40 1 6.6411 -12.1755 -0.5771 41 1 5.5399 -13.0275 -2.5788 42 1 3.6608 -11.8146 -3.5955 43 1 2.8473 -9.7298 -2.6296 44 1 2.5285 -3.8643 0.9023 45 1 2.5597 -3.8501 -0.8818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958359459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = 9.442344 kcal Electronic energy + Delta-G solvation = -28792.534602 eV Core-core repulsion = 24776.031708 eV Total energy + Delta-G solvation = -4016.502894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33826 -39.39791 -38.17163 -37.62642 -34.95090 -34.50317 -33.23671 -32.16595 -31.42540 -30.27887 -29.40333 -27.72408 -25.88931 -24.93076 -23.81174 -23.57401 -22.61533 -20.99478 -20.20044 -19.61233 -18.36774 -17.68873 -17.35124 -17.27662 -16.39433 -15.99862 -15.86233 -15.46469 -14.87133 -14.81076 -14.58793 -14.43404 -14.01070 -14.00056 -13.76778 -13.53512 -13.20131 -13.02644 -12.66555 -12.41426 -12.29039 -12.09866 -11.91727 -11.72675 -11.35634 -11.21740 -10.78160 -10.64524 -10.43883 -10.34938 -10.21908 -10.09549 -9.96374 -9.80038 -9.52055 -9.40702 -9.08903 -8.95480 -8.66387 -8.34016 -6.81617 -5.67067 -3.06362 -0.18871 0.60684 1.47407 2.49251 3.04274 3.06848 3.40742 3.45720 3.47352 3.86788 3.95977 4.27601 4.46167 4.49362 4.50459 4.60230 4.75914 4.83587 4.92567 5.03544 5.15618 5.17514 5.34052 5.40354 5.44866 5.52784 5.54887 5.63052 5.74501 5.81458 5.92659 6.04845 6.07511 6.13504 6.20923 6.31315 6.37118 6.45834 6.51136 6.64002 6.70130 6.89360 7.29797 7.37069 7.59850 7.66450 7.76991 8.18207 8.25278 8.38952 9.20552 9.82192 10.46775 11.38350 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.002357 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.222460 B =11877.486685 C =12762.943733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.216 4.216 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.126 3.874 11 C 0.083 3.917 12 H 0.055 0.945 13 O -0.557 6.557 14 C -0.106 4.106 15 H 0.087 0.913 16 C 0.137 3.863 17 N -0.699 5.699 18 C 0.570 3.430 19 O -0.532 6.532 20 C 0.128 3.872 21 N -0.455 5.455 22 C 0.076 3.924 23 C -0.134 4.134 24 C -0.031 4.031 25 C -0.121 4.121 26 C -0.094 4.094 27 C -0.125 4.125 28 C -0.089 4.089 29 C -0.073 4.073 30 C 0.144 3.856 31 H 0.251 0.749 32 H 0.111 0.889 33 H 0.020 0.980 34 H 0.375 0.625 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.412 0.588 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.174 0.826 44 H 0.021 0.979 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.484 -24.168 -0.038 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.344 4.344 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.001 3.999 11 C 0.022 3.978 12 H 0.073 0.927 13 O -0.363 6.363 14 C -0.126 4.126 15 H 0.105 0.895 16 C 0.014 3.986 17 N -0.349 5.349 18 C 0.354 3.646 19 O -0.410 6.410 20 C -0.024 4.024 21 N -0.167 5.167 22 C -0.070 4.070 23 C -0.154 4.154 24 C -0.036 4.036 25 C -0.139 4.139 26 C -0.113 4.113 27 C -0.143 4.143 28 C -0.108 4.108 29 C -0.075 4.075 30 C 0.018 3.982 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.037 0.963 34 H 0.222 0.778 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.248 0.752 38 H 0.179 0.821 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.191 0.809 44 H 0.038 0.962 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.415 -23.724 -0.196 24.856 hybrid contribution 0.662 0.514 0.227 0.869 sum 8.077 -23.210 0.031 24.575 Atomic orbital electron populations 1.69746 1.04903 1.24730 1.58199 1.24756 0.95753 0.97689 1.02630 0.86053 0.78505 0.83258 0.77585 1.21607 1.21699 1.20762 1.19089 0.90523 0.82411 1.42413 0.90468 1.44407 1.01476 0.99750 1.86699 1.22629 0.85748 0.92954 0.98609 1.23189 0.95089 0.98111 0.81395 0.92723 1.86388 1.54212 1.76751 1.18925 1.22511 0.97460 0.94322 0.98283 0.89513 1.21359 0.87758 0.91532 0.97946 1.46011 1.35095 1.27328 1.26460 1.17708 0.81974 0.80752 0.84130 1.90582 1.60047 1.67972 1.22403 1.21446 0.95770 0.92787 0.92419 1.67293 1.07907 1.32943 1.08525 1.22220 0.92913 0.92467 0.99447 1.22147 1.00432 0.97204 0.95619 1.18208 0.94855 0.95335 0.95227 1.20920 1.00773 0.95238 0.96967 1.21081 0.95360 0.99558 0.95307 1.21131 0.97020 0.95611 1.00543 1.22227 0.99947 0.95135 0.93469 1.18706 0.96572 0.95090 0.97180 1.21309 0.93339 0.85581 0.97981 0.93787 0.87096 0.96252 0.77815 0.91404 0.89701 0.75217 0.82131 0.84004 0.85040 0.85562 0.85369 0.80895 0.96158 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.72 10.11 55.49 0.56 -26.16 16 2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 3 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.08 10.28 -15.06 -0.15 -6.23 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.32 3.41 -169.81 -0.58 -15.90 16 10 C 0.13 2.96 5.65 -2.35 -0.01 2.95 16 11 C 0.08 1.52 4.17 -24.58 -0.10 1.42 16 12 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 13 O -0.56 -10.26 12.22 -35.23 -0.43 -10.69 16 14 C -0.11 -1.84 2.95 -88.78 -0.26 -2.10 16 15 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 16 C 0.14 2.19 4.59 -4.04 -0.02 2.17 16 17 N -0.70 -10.31 5.39 -61.22 -0.33 -10.64 16 18 C 0.57 8.70 7.78 -12.28 -0.10 8.61 16 19 O -0.53 -8.99 13.44 5.33 0.07 -8.91 16 20 C 0.13 1.76 6.81 -82.55 -0.56 1.20 16 21 N -0.46 -5.78 9.52 -9.81 -0.09 -5.87 16 22 C 0.08 0.74 11.06 -18.03 -0.20 0.54 16 23 C -0.13 -1.15 9.88 -39.28 -0.39 -1.54 16 24 C -0.03 -0.32 5.75 -106.82 -0.61 -0.94 16 25 C -0.12 -0.98 9.82 -39.53 -0.39 -1.37 16 26 C -0.09 -0.73 9.95 -39.89 -0.40 -1.13 16 27 C -0.12 -1.16 9.95 -39.87 -0.40 -1.55 16 28 C -0.09 -1.07 9.23 -39.60 -0.37 -1.43 16 29 C -0.07 -0.92 5.76 -106.60 -0.61 -1.53 16 30 C 0.14 3.04 6.51 -3.06 -0.02 3.02 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.11 2.92 5.89 -51.93 -0.31 2.61 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.37 5.63 9.12 45.56 0.42 6.04 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.57 7.44 -51.93 -0.39 1.18 16 37 H 0.41 5.70 7.69 -40.82 -0.31 5.39 16 38 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.17 2.32 4.96 -52.49 -0.26 2.06 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.03 0.63 7.76 -51.93 -0.40 0.22 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -33.54 370.56 -9.95 -43.50 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.03 Total: 10.28 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -4.69 Total: 1.61 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.44 Total: -58.57 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.36 Total: -19.61 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.54 -9.95 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958359459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.938 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds