Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47138 * 269.99992 * 3 2 1 5 5 H 1.48506 * 109.47193 * 30.00193 * 3 2 1 6 6 H 1.48498 * 109.47139 * 150.00042 * 3 2 1 7 7 C 1.38813 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00034 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64882 * 0.03719 * 9 7 2 11 11 C 1.54314 * 107.27289 * 181.02803 * 10 9 7 12 12 H 1.09004 * 110.87338 * 140.63007 * 11 10 9 13 13 O 1.42903 * 110.72054 * 263.82722 * 11 10 9 14 14 C 1.55152 * 102.94606 * 22.19374 * 11 10 9 15 15 H 1.09005 * 111.00538 * 82.57095 * 14 11 10 16 16 C 1.53004 * 111.00508 * 206.42537 * 14 11 10 17 17 N 1.46503 * 109.46705 * 184.99842 * 16 14 11 18 18 C 1.34781 * 119.99750 * 179.97438 * 17 16 14 19 19 O 1.21559 * 119.99739 * 0.02562 * 18 17 16 20 20 C 1.47754 * 119.99980 * 179.97438 * 18 17 16 21 21 C 1.40599 * 120.26858 * 359.72929 * 20 18 17 22 22 N 1.30801 * 121.53889 * 179.66737 * 21 20 18 23 23 C 1.33824 * 121.71893 * 0.63307 * 22 21 20 24 24 C 1.40527 * 120.82497 * 179.67799 * 23 22 21 25 25 C 1.36130 * 119.81472 * 179.97438 * 24 23 22 26 26 C 1.39334 * 121.09361 * 0.02562 * 25 24 23 27 27 C 1.36145 * 120.83083 * 359.97438 * 26 25 24 28 28 C 1.40543 * 119.62103 * 0.04547 * 27 26 25 29 29 C 1.39010 * 120.27243 * 180.02562 * 20 18 17 30 30 C 1.47422 * 125.65252 * 180.02562 * 9 7 2 31 31 H 0.97001 * 120.00218 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.87825 * 61.60817 * 10 9 7 33 33 H 1.09001 * 109.88209 * 300.44872 * 10 9 7 34 34 H 0.96700 * 114.00311 * 293.52656 * 13 11 10 35 35 H 1.08990 * 109.47191 * 304.99663 * 16 14 11 36 36 H 1.08999 * 109.46836 * 65.00272 * 16 14 11 37 37 H 0.97001 * 120.00169 * 359.97438 * 17 16 14 38 38 H 1.08001 * 119.23532 * 359.96977 * 21 20 18 39 39 H 1.07998 * 120.08669 * 359.95885 * 24 23 22 40 40 H 1.08000 * 119.45241 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.59123 * 180.02562 * 26 25 24 42 42 H 1.07996 * 120.19229 * 180.02562 * 27 26 25 43 43 H 1.08006 * 121.01332 * 359.97438 * 29 20 18 44 44 H 1.09002 * 110.36847 * 37.05704 * 30 9 7 45 45 H 1.09001 * 110.36336 * 274.74147 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1375 -2.5328 -0.0030 11 6 -0.4484 -4.0441 0.0226 12 1 -1.2996 -4.2546 0.6701 13 8 -0.6874 -4.5336 -1.2986 14 6 0.8513 -4.6565 0.6081 15 1 0.8553 -4.5973 1.6965 16 6 1.0368 -6.1009 0.1389 17 7 2.2052 -6.6839 0.8032 18 6 2.5633 -7.9568 0.5424 19 8 1.9171 -8.6209 -0.2443 20 6 3.7420 -8.5446 1.2120 21 6 4.4975 -7.7793 2.1179 22 7 5.5414 -8.2766 2.7293 23 6 5.9503 -9.5326 2.5148 24 6 7.0787 -10.0455 3.1770 25 6 7.4762 -11.3264 2.9437 26 6 6.7821 -12.1448 2.0549 27 6 5.6844 -11.6842 1.3943 28 6 5.2456 -10.3666 1.6104 29 6 4.1168 -9.8567 0.9468 30 6 1.9335 -3.7311 -0.0017 31 1 -0.4850 0.8400 0.0004 32 1 -0.5535 -2.0839 -0.9051 33 1 -0.5584 -2.0527 0.8804 34 1 -1.4886 -4.1811 -1.7097 35 1 0.1491 -6.6813 0.3898 36 1 1.1876 -6.1158 -0.9405 37 1 2.7211 -6.1538 1.4308 38 1 4.2062 -6.7586 2.3172 39 1 7.6290 -9.4251 3.8688 40 1 8.3445 -11.7145 3.4555 41 1 7.1186 -13.1574 1.8884 42 1 5.1539 -12.3275 0.7080 43 1 3.5572 -10.4657 0.2522 44 1 2.8323 -3.7408 0.6147 45 1 2.1676 -4.0414 -1.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958438282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = 0.465847 kcal Electronic energy + Delta-G solvation = -28309.723354 eV Core-core repulsion = 24292.831210 eV Total energy + Delta-G solvation = -4016.892144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26599 -39.64838 -38.31382 -37.22541 -35.04274 -34.64192 -33.76417 -32.29007 -31.18204 -30.42845 -29.55010 -27.77572 -25.86702 -24.74514 -24.40036 -23.25972 -22.45429 -21.16552 -20.27047 -19.87588 -18.50583 -18.08661 -17.52697 -17.28800 -16.44906 -16.10707 -15.47418 -15.38000 -14.94783 -14.85831 -14.57189 -14.56130 -14.04117 -14.00065 -13.79596 -13.69593 -13.40536 -13.26684 -12.77007 -12.59749 -12.17733 -12.15340 -11.91657 -11.85970 -11.44485 -11.24687 -10.86341 -10.82598 -10.69208 -10.51298 -10.40473 -10.07841 -10.00959 -9.81789 -9.66234 -9.23844 -9.20518 -8.96902 -8.68098 -8.65782 -6.88873 -5.76602 -3.09658 -0.11227 0.26378 1.51807 2.26399 3.04933 3.07991 3.37829 3.43012 3.44525 3.77516 3.84439 4.19204 4.35285 4.42856 4.44415 4.45924 4.63943 4.68745 4.73672 4.85326 5.02328 5.09203 5.29488 5.35698 5.38864 5.50255 5.51267 5.52410 5.58007 5.65739 5.87489 5.90341 5.99590 6.02395 6.06677 6.09194 6.33622 6.35503 6.39094 6.41584 6.57374 6.86186 7.36166 7.43407 7.46199 7.50682 7.72142 8.11314 8.18407 8.21521 9.16283 9.76928 10.42226 11.35470 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002210 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.462740 B =12669.302653 C =14086.335325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.564 6.564 14 C -0.110 4.110 15 H 0.090 0.910 16 C 0.141 3.859 17 N -0.718 5.718 18 C 0.561 3.439 19 O -0.537 6.537 20 C -0.190 4.190 21 C 0.163 3.837 22 N -0.474 5.474 23 C 0.141 3.859 24 C -0.098 4.098 25 C -0.093 4.093 26 C -0.121 4.121 27 C -0.085 4.085 28 C -0.114 4.114 29 C 0.011 3.989 30 C 0.144 3.856 31 H 0.252 0.748 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.376 0.624 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.400 0.600 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.037 0.963 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 -23.102 5.799 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.370 6.370 14 C -0.130 4.130 15 H 0.108 0.892 16 C 0.018 3.982 17 N -0.369 5.369 18 C 0.347 3.653 19 O -0.415 6.415 20 C -0.195 4.195 21 C -0.011 4.011 22 N -0.182 5.182 23 C 0.020 3.980 24 C -0.116 4.116 25 C -0.113 4.113 26 C -0.139 4.139 27 C -0.104 4.104 28 C -0.116 4.116 29 C -0.015 4.015 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.235 0.765 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.171 0.829 44 H 0.055 0.945 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.488 -23.190 5.979 25.759 hybrid contribution -0.357 1.159 -0.370 1.268 sum 9.130 -22.031 5.609 24.499 Atomic orbital electron populations 1.69925 1.04920 1.25103 1.57340 1.24797 0.95761 0.97738 1.02257 0.86094 0.78572 0.83349 0.77603 1.21596 1.21679 1.20656 1.19071 0.90478 0.82328 1.43585 0.90350 1.44371 1.01356 0.99964 1.87235 1.21856 0.85350 0.88346 1.01641 1.23128 0.95080 0.96267 0.83234 0.92487 1.86402 1.48909 1.71469 1.30213 1.22695 0.97259 0.93005 1.00062 0.89197 1.21238 0.86545 0.92294 0.98114 1.46052 1.31663 1.12842 1.46387 1.17919 0.83676 0.81934 0.81746 1.90785 1.54270 1.60954 1.35527 1.21027 0.99470 0.96402 1.02606 1.23120 0.89012 0.99422 0.89504 1.67978 1.14242 1.12290 1.23654 1.19048 0.95097 0.89603 0.94278 1.20859 0.95249 0.95808 0.99698 1.20998 0.99516 0.93556 0.97200 1.20958 0.95699 1.00376 0.96909 1.21087 0.96620 0.93714 0.99005 1.18847 0.97176 0.95995 0.99535 1.21975 0.92202 0.93687 0.93685 1.21596 0.93663 0.85766 0.97205 0.93732 0.93208 0.92923 0.77743 0.91453 0.90060 0.76489 0.81895 0.84400 0.85061 0.85239 0.84818 0.82860 0.94471 0.95638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.31 55.49 0.57 -26.02 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.21 10.28 -15.06 -0.15 -6.36 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.99 3.39 -170.09 -0.58 -15.57 16 10 C 0.15 3.54 5.14 -3.07 -0.02 3.53 16 11 C 0.08 1.47 4.09 -24.90 -0.10 1.37 16 12 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 13 O -0.56 -9.63 12.24 -35.23 -0.43 -10.06 16 14 C -0.11 -1.81 2.97 -88.48 -0.26 -2.07 16 15 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 16 C 0.14 2.11 4.60 -4.04 -0.02 2.09 16 17 N -0.72 -9.18 5.45 -61.28 -0.33 -9.52 16 18 C 0.56 7.72 7.77 -12.37 -0.10 7.62 16 19 O -0.54 -9.11 16.38 5.31 0.09 -9.03 16 20 C -0.19 -2.21 5.89 -104.83 -0.62 -2.83 16 21 C 0.16 1.78 10.68 -17.10 -0.18 1.60 16 22 N -0.47 -5.64 10.30 -10.67 -0.11 -5.75 16 23 C 0.14 1.54 6.61 -84.78 -0.56 0.98 16 24 C -0.10 -0.84 9.97 -39.48 -0.39 -1.23 16 25 C -0.09 -0.60 9.94 -39.93 -0.40 -1.00 16 26 C -0.12 -0.75 9.96 -39.93 -0.40 -1.15 16 27 C -0.09 -0.64 9.77 -39.47 -0.39 -1.03 16 28 C -0.11 -1.14 5.74 -106.82 -0.61 -1.76 16 29 C 0.01 0.12 9.46 -38.44 -0.36 -0.24 16 30 C 0.14 2.87 6.64 -2.54 -0.02 2.86 16 31 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.05 1.28 7.43 -51.93 -0.39 0.90 16 33 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 34 H 0.38 5.05 9.12 45.56 0.42 5.47 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.40 7.55 -51.93 -0.39 1.01 16 37 H 0.40 4.23 6.50 -40.82 -0.27 3.96 16 38 H 0.16 1.39 6.37 -52.49 -0.33 1.06 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.15 1.48 7.70 -52.48 -0.40 1.08 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.55 7.91 -51.93 -0.41 0.14 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -34.59 374.86 -9.93 -44.52 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.09 Total: 6.92 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -4.67 Total: 2.00 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.45 Total: -56.86 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.34 Total: -19.09 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.59 -9.93 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958438282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.983 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds