Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47138 * 269.99992 * 3 2 1 5 5 H 1.48506 * 109.47193 * 30.00193 * 3 2 1 6 6 H 1.48498 * 109.47139 * 150.00042 * 3 2 1 7 7 C 1.38813 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00034 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64882 * 0.03719 * 9 7 2 11 11 C 1.54314 * 107.27289 * 181.02803 * 10 9 7 12 12 H 1.09004 * 110.87338 * 140.63007 * 11 10 9 13 13 O 1.42903 * 110.72054 * 263.82722 * 11 10 9 14 14 C 1.55152 * 102.94606 * 22.19374 * 11 10 9 15 15 H 1.09005 * 111.00538 * 82.57095 * 14 11 10 16 16 C 1.53004 * 111.00508 * 206.42537 * 14 11 10 17 17 N 1.46503 * 109.46705 * 184.99842 * 16 14 11 18 18 C 1.34781 * 119.99750 * 179.97438 * 17 16 14 19 19 O 1.21559 * 119.99739 * 0.02562 * 18 17 16 20 20 C 1.47754 * 119.99980 * 179.97438 * 18 17 16 21 21 C 1.40599 * 120.26858 * 359.72929 * 20 18 17 22 22 N 1.30801 * 121.53889 * 179.66737 * 21 20 18 23 23 C 1.33824 * 121.71893 * 0.63307 * 22 21 20 24 24 C 1.40527 * 120.82497 * 179.67799 * 23 22 21 25 25 C 1.36130 * 119.81472 * 179.97438 * 24 23 22 26 26 C 1.39334 * 121.09361 * 0.02562 * 25 24 23 27 27 C 1.36145 * 120.83083 * 359.97438 * 26 25 24 28 28 C 1.40543 * 119.62103 * 0.04547 * 27 26 25 29 29 C 1.39010 * 120.27243 * 180.02562 * 20 18 17 30 30 C 1.47422 * 125.65252 * 180.02562 * 9 7 2 31 31 H 0.97001 * 120.00218 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.87825 * 61.60817 * 10 9 7 33 33 H 1.09001 * 109.88209 * 300.44872 * 10 9 7 34 34 H 0.96700 * 114.00311 * 293.52656 * 13 11 10 35 35 H 1.08990 * 109.47191 * 304.99663 * 16 14 11 36 36 H 1.08999 * 109.46836 * 65.00272 * 16 14 11 37 37 H 0.97001 * 120.00169 * 359.97438 * 17 16 14 38 38 H 1.08001 * 119.23532 * 359.96977 * 21 20 18 39 39 H 1.07998 * 120.08669 * 359.95885 * 24 23 22 40 40 H 1.08000 * 119.45241 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.59123 * 180.02562 * 26 25 24 42 42 H 1.07996 * 120.19229 * 180.02562 * 27 26 25 43 43 H 1.08006 * 121.01332 * 359.97438 * 29 20 18 44 44 H 1.09002 * 110.36847 * 37.05704 * 30 9 7 45 45 H 1.09001 * 110.36336 * 274.74147 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1375 -2.5328 -0.0030 11 6 -0.4484 -4.0441 0.0226 12 1 -1.2996 -4.2546 0.6701 13 8 -0.6874 -4.5336 -1.2986 14 6 0.8513 -4.6565 0.6081 15 1 0.8553 -4.5973 1.6965 16 6 1.0368 -6.1009 0.1389 17 7 2.2052 -6.6839 0.8032 18 6 2.5633 -7.9568 0.5424 19 8 1.9171 -8.6209 -0.2443 20 6 3.7420 -8.5446 1.2120 21 6 4.4975 -7.7793 2.1179 22 7 5.5414 -8.2766 2.7293 23 6 5.9503 -9.5326 2.5148 24 6 7.0787 -10.0455 3.1770 25 6 7.4762 -11.3264 2.9437 26 6 6.7821 -12.1448 2.0549 27 6 5.6844 -11.6842 1.3943 28 6 5.2456 -10.3666 1.6104 29 6 4.1168 -9.8567 0.9468 30 6 1.9335 -3.7311 -0.0017 31 1 -0.4850 0.8400 0.0004 32 1 -0.5535 -2.0839 -0.9051 33 1 -0.5584 -2.0527 0.8804 34 1 -1.4886 -4.1811 -1.7097 35 1 0.1491 -6.6813 0.3898 36 1 1.1876 -6.1158 -0.9405 37 1 2.7211 -6.1538 1.4308 38 1 4.2062 -6.7586 2.3172 39 1 7.6290 -9.4251 3.8688 40 1 8.3445 -11.7145 3.4555 41 1 7.1186 -13.1574 1.8884 42 1 5.1539 -12.3275 0.7080 43 1 3.5572 -10.4657 0.2522 44 1 2.8323 -3.7408 0.6147 45 1 2.1676 -4.0414 -1.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958438282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = -24.843712 kcal Electronic energy + Delta-G solvation = -28310.820859 eV Core-core repulsion = 24292.831210 eV Total energy + Delta-G solvation = -4017.989649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.03307 -40.73083 -39.77339 -37.92611 -36.40893 -36.16828 -34.51796 -33.99103 -32.20613 -31.12272 -30.95978 -29.42261 -27.37150 -26.04106 -25.12571 -24.57186 -23.11720 -22.39275 -21.84016 -21.23877 -19.42683 -19.07959 -18.86895 -18.35346 -17.89477 -16.97073 -16.79608 -16.49710 -16.46930 -15.79982 -15.56549 -15.48696 -15.35702 -15.23748 -14.98321 -14.66864 -14.44487 -14.36912 -14.28082 -14.07590 -13.55358 -13.13411 -13.07971 -12.78617 -12.74117 -12.67286 -12.43668 -12.35900 -12.08947 -11.91137 -11.77972 -11.64358 -11.61145 -11.26987 -10.78211 -10.72398 -10.55656 -10.21134 -9.83676 -9.31171 -8.90657 -7.86070 -5.20928 -0.83648 -0.44078 0.82619 1.46212 1.47617 1.49041 1.56143 2.01162 2.20375 2.48754 3.04739 3.13190 3.28135 3.36312 3.51898 3.55193 3.58195 3.68879 3.77899 3.90799 3.92820 3.98782 4.01365 4.21682 4.31835 4.42194 4.44502 4.58573 4.64211 4.70025 4.79674 4.85172 4.91321 4.95215 5.00583 5.04644 5.26714 5.33954 5.38929 5.41143 5.42614 5.46020 5.53796 5.70829 5.83692 6.17946 6.41105 6.73986 6.94046 7.07483 7.09645 7.76198 8.40336 9.24112 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002210 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.462740 B =12669.302653 C =14086.335325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.625 5.625 10 C 0.160 3.840 11 C 0.096 3.904 12 H 0.088 0.912 13 O -0.571 6.571 14 C -0.093 4.093 15 H 0.111 0.889 16 C 0.157 3.843 17 N -0.710 5.710 18 C 0.566 3.434 19 O -0.574 6.574 20 C -0.206 4.206 21 C 0.159 3.841 22 N -0.495 5.495 23 C 0.118 3.882 24 C -0.120 4.120 25 C -0.078 4.078 26 C -0.115 4.115 27 C -0.092 4.092 28 C -0.128 4.128 29 C 0.013 3.987 30 C 0.141 3.859 31 H 0.247 0.753 32 H 0.013 0.987 33 H 0.024 0.976 34 H 0.391 0.609 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.412 0.588 38 H 0.180 0.820 39 H 0.143 0.857 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.052 0.948 45 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.680 -25.480 6.827 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.351 5.351 10 C 0.034 3.966 11 C 0.035 3.965 12 H 0.106 0.894 13 O -0.379 6.379 14 C -0.113 4.113 15 H 0.129 0.871 16 C 0.033 3.967 17 N -0.362 5.362 18 C 0.353 3.647 19 O -0.455 6.455 20 C -0.211 4.211 21 C -0.015 4.015 22 N -0.203 5.203 23 C -0.002 4.002 24 C -0.139 4.139 25 C -0.097 4.097 26 C -0.133 4.133 27 C -0.111 4.111 28 C -0.130 4.130 29 C -0.014 4.014 30 C 0.016 3.984 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.240 0.760 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.249 0.751 38 H 0.197 0.803 39 H 0.161 0.839 40 H 0.182 0.818 41 H 0.181 0.819 42 H 0.173 0.827 43 H 0.177 0.823 44 H 0.071 0.929 45 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 11.281 -25.585 7.020 28.830 hybrid contribution -0.787 1.757 -0.708 2.051 sum 10.493 -23.829 6.312 26.791 Atomic orbital electron populations 1.70138 1.06169 1.25265 1.58459 1.25617 0.96673 1.00926 1.02728 0.85093 0.77782 0.79241 0.77311 1.21684 1.22000 1.19246 1.19454 0.91027 0.83686 1.42736 0.90004 1.44694 1.02366 1.01060 1.86972 1.21684 0.84456 0.91922 0.98522 1.22969 0.96836 0.92389 0.84267 0.89383 1.86383 1.50206 1.71161 1.30121 1.22587 0.94924 0.92845 1.00907 0.87116 1.20918 0.87576 0.91367 0.96844 1.45902 1.31194 1.12799 1.46275 1.18164 0.83730 0.81698 0.81060 1.90760 1.55629 1.61841 1.37261 1.20845 0.99362 0.97092 1.03814 1.23319 0.88825 1.00066 0.89261 1.67992 1.14739 1.13209 1.24356 1.19467 0.96099 0.89615 0.95051 1.21074 0.95188 0.97128 1.00482 1.21442 0.99734 0.92450 0.96102 1.21411 0.94595 1.01742 0.95508 1.21412 0.97291 0.92838 0.99559 1.19040 0.97085 0.97229 0.99654 1.22154 0.92361 0.93453 0.93422 1.21719 0.95314 0.84369 0.97035 0.94394 0.96867 0.95801 0.75975 0.90766 0.92315 0.75077 0.80288 0.83888 0.81841 0.81867 0.82717 0.82320 0.92935 0.97018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.28 10.31 21.65 0.22 -56.06 16 2 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.24 -13.32 10.28 84.03 0.86 -12.46 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -31.46 3.39 -692.03 -2.35 -33.81 16 10 C 0.16 7.55 5.14 86.72 0.45 7.99 16 11 C 0.10 3.30 4.09 31.78 0.13 3.43 16 12 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 13 O -0.57 -19.09 12.24 -148.98 -1.82 -20.92 16 14 C -0.09 -2.92 2.97 -9.41 -0.03 -2.95 16 15 H 0.11 3.07 8.14 -2.38 -0.02 3.06 16 16 C 0.16 4.50 4.60 86.38 0.40 4.90 16 17 N -0.71 -17.47 5.45 -466.06 -2.54 -20.01 16 18 C 0.57 15.39 7.77 86.76 0.67 16.06 16 19 O -0.57 -19.49 16.38 -3.90 -0.06 -19.56 16 20 C -0.21 -4.77 5.89 -20.00 -0.12 -4.88 16 21 C 0.16 3.42 10.68 85.42 0.91 4.34 16 22 N -0.50 -11.67 10.30 -187.67 -1.93 -13.60 16 23 C 0.12 2.50 6.61 40.27 0.27 2.77 16 24 C -0.12 -1.88 9.97 22.34 0.22 -1.66 16 25 C -0.08 -0.75 9.94 22.04 0.22 -0.53 16 26 C -0.12 -1.01 9.96 22.05 0.22 -0.79 16 27 C -0.09 -1.16 9.77 22.34 0.22 -0.94 16 28 C -0.13 -2.45 5.74 -21.29 -0.12 -2.57 16 29 C 0.01 0.27 9.46 23.01 0.22 0.48 16 30 C 0.14 5.56 6.64 86.85 0.58 6.14 16 31 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.01 0.71 7.43 -2.39 -0.02 0.69 16 33 H 0.02 1.25 7.38 -2.39 -0.02 1.23 16 34 H 0.39 10.29 9.12 -74.06 -0.68 9.62 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 2.00 7.55 -2.39 -0.02 1.98 16 37 H 0.41 8.13 6.50 -92.71 -0.60 7.53 16 38 H 0.18 2.94 6.37 -2.91 -0.02 2.92 16 39 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 41 H 0.16 0.35 8.06 -2.91 -0.02 0.33 16 42 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.16 3.02 7.70 -2.91 -0.02 3.00 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.01 0.51 7.91 -2.39 -0.02 0.49 16 Total: -1.00 -77.27 374.86 -1.14 -78.40 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.24 Total: 21.95 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 5.56 Total: 16.04 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -6.60 Total: -123.48 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -1.89 Total: -40.47 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -77.27 -1.14 -78.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958438282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.560 kcal (2) G-P(sol) polarization free energy of solvation -77.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds