Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47223 * 240.00101 * 3 2 1 5 5 H 1.48511 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47179 * 119.99821 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 13 13 O 1.42901 * 111.00253 * 81.06291 * 11 10 9 14 14 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 15 15 H 1.08993 * 110.71917 * 277.13865 * 14 11 10 16 16 C 1.52997 * 110.71789 * 153.86302 * 14 11 10 17 17 N 1.46505 * 109.47120 * 180.02562 * 16 14 11 18 18 C 1.34779 * 120.00047 * 180.02562 * 17 16 14 19 19 O 1.21564 * 119.99720 * 359.97438 * 18 17 16 20 20 C 1.47754 * 119.99818 * 179.97438 * 18 17 16 21 21 C 1.40600 * 120.26731 * 359.72181 * 20 18 17 22 22 N 1.30797 * 121.53539 * 179.76164 * 21 20 18 23 23 C 1.33828 * 121.71556 * 0.49606 * 22 21 20 24 24 C 1.40530 * 120.80487 * 179.72929 * 23 22 21 25 25 C 1.36136 * 119.81013 * 180.02562 * 24 23 22 26 26 C 1.39340 * 121.08526 * 359.97438 * 25 24 23 27 27 C 1.36137 * 120.83990 * 359.97438 * 26 25 24 28 28 C 1.40544 * 119.61846 * 0.02562 * 27 26 25 29 29 C 1.39007 * 120.26584 * 179.97438 * 20 18 17 30 30 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 31 31 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 32 32 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 33 33 H 1.08999 * 110.36490 * 85.21507 * 10 9 7 34 34 H 0.96700 * 113.99672 * 67.80895 * 13 11 10 35 35 H 1.08993 * 109.47505 * 300.02434 * 16 14 11 36 36 H 1.09004 * 109.46953 * 60.02320 * 16 14 11 37 37 H 0.97001 * 119.99639 * 359.97438 * 17 16 14 38 38 H 1.07994 * 119.23267 * 359.97438 * 21 20 18 39 39 H 1.08002 * 120.09727 * 0.03196 * 24 23 22 40 40 H 1.07996 * 119.45637 * 179.97438 * 25 24 23 41 41 H 1.08007 * 119.57950 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.19458 * 180.02562 * 27 26 25 43 43 H 1.08001 * 121.01959 * 359.97438 * 29 20 18 44 44 H 1.08997 * 109.88723 * 59.48965 * 30 9 7 45 45 H 1.09000 * 110.01436 * 298.39517 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 1 -1.3585 -4.3328 0.2808 13 8 -0.3344 -3.8871 2.0401 14 6 0.7787 -4.7525 0.0273 15 1 0.5453 -5.0982 -0.9796 16 6 1.1244 -5.9311 0.9396 17 7 2.2398 -6.6851 0.3618 18 6 2.7180 -7.7735 0.9967 19 8 2.2242 -8.1293 2.0490 20 6 3.8425 -8.5342 0.4137 21 6 4.4141 -8.1311 -0.8060 22 7 5.4130 -8.7833 -1.3421 23 6 5.9346 -9.8712 -0.7630 24 6 7.0045 -10.5607 -1.3588 25 6 7.5192 -11.6655 -0.7523 26 6 7.0031 -12.1291 0.4561 27 6 5.9679 -11.4878 1.0647 28 6 5.4117 -10.3438 0.4670 29 6 4.3405 -9.6573 1.0640 30 6 1.9320 -3.7274 -0.0005 31 1 -0.4850 0.8400 0.0004 32 1 -0.5987 -1.7588 0.6167 33 1 -0.5283 -2.4851 -1.0170 34 1 -1.0513 -3.3852 2.4515 35 1 1.4091 -5.5579 1.9232 36 1 0.2561 -6.5830 1.0356 37 1 2.6335 -6.4013 -0.4781 38 1 4.0213 -7.2606 -1.3103 39 1 7.4172 -10.2152 -2.2951 40 1 8.3410 -12.1913 -1.2154 41 1 7.4303 -13.0079 0.9162 42 1 5.5762 -11.8559 2.0015 43 1 3.9181 -9.9914 2.0001 44 1 2.5590 -3.8505 0.8825 45 1 2.5296 -3.8664 -0.9015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958438284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = 2.582984 kcal Electronic energy + Delta-G solvation = -28385.707152 eV Core-core repulsion = 24368.906815 eV Total energy + Delta-G solvation = -4016.800338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.26173 -39.64654 -38.27371 -37.21905 -35.00323 -34.55611 -33.75883 -32.31477 -31.17305 -30.42473 -29.55337 -27.75637 -25.85625 -24.75781 -24.39700 -23.24806 -22.45056 -21.19050 -20.27120 -19.72193 -18.50474 -18.08525 -17.48533 -17.28002 -16.42619 -16.09422 -15.46149 -15.37176 -14.94779 -14.85777 -14.60227 -14.56011 -14.17070 -13.99014 -13.83345 -13.72153 -13.38482 -13.19565 -12.70696 -12.36573 -12.17335 -12.13485 -11.97395 -11.85026 -11.39887 -11.25721 -10.85503 -10.79657 -10.68357 -10.47803 -10.38105 -10.12529 -9.97487 -9.83677 -9.65558 -9.23275 -9.12150 -8.96305 -8.68756 -8.65339 -6.85574 -5.69756 -3.09836 -0.10718 0.26765 1.52230 2.26885 3.05413 3.09320 3.39407 3.43566 3.44662 3.78016 3.84572 4.19651 4.35689 4.43261 4.44765 4.47219 4.64751 4.71826 4.74794 4.85895 5.03094 5.12384 5.29172 5.36460 5.39216 5.49612 5.51222 5.52191 5.60925 5.66123 5.88153 5.90823 6.00028 6.02689 6.09395 6.10473 6.31849 6.39106 6.40478 6.44228 6.61171 6.83664 7.27000 7.44245 7.50881 7.56435 7.74375 8.12565 8.22530 8.36189 9.17782 9.79177 10.42885 11.35091 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017565 B = 0.002197 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.670494 B =12740.065378 C =13840.889354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.126 3.874 11 C 0.082 3.918 12 H 0.055 0.945 13 O -0.558 6.558 14 C -0.107 4.107 15 H 0.087 0.913 16 C 0.140 3.860 17 N -0.718 5.718 18 C 0.561 3.439 19 O -0.537 6.537 20 C -0.189 4.189 21 C 0.163 3.837 22 N -0.475 5.475 23 C 0.140 3.860 24 C -0.098 4.098 25 C -0.093 4.093 26 C -0.121 4.121 27 C -0.085 4.085 28 C -0.113 4.113 29 C 0.011 3.989 30 C 0.144 3.856 31 H 0.252 0.748 32 H 0.112 0.888 33 H 0.019 0.981 34 H 0.375 0.625 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.028 0.972 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 -23.609 -1.090 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.001 3.999 11 C 0.022 3.978 12 H 0.073 0.927 13 O -0.363 6.363 14 C -0.127 4.127 15 H 0.105 0.895 16 C 0.017 3.983 17 N -0.369 5.369 18 C 0.347 3.653 19 O -0.415 6.415 20 C -0.195 4.195 21 C -0.011 4.011 22 N -0.182 5.182 23 C 0.020 3.980 24 C -0.116 4.116 25 C -0.113 4.113 26 C -0.139 4.139 27 C -0.104 4.104 28 C -0.115 4.115 29 C -0.015 4.015 30 C 0.017 3.983 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.037 0.963 34 H 0.222 0.778 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.171 0.829 44 H 0.046 0.954 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.135 -23.750 -1.254 25.477 hybrid contribution -0.217 1.165 0.281 1.218 sum 8.918 -22.585 -0.973 24.302 Atomic orbital electron populations 1.69729 1.04910 1.24912 1.57955 1.24761 0.95754 0.97728 1.02468 0.86129 0.78399 0.82921 0.77919 1.21221 1.21578 1.21146 1.19039 0.90504 0.82422 1.42778 0.90519 1.44325 1.01521 0.99728 1.86712 1.22592 0.85722 0.92969 0.98649 1.23196 0.95100 0.98116 0.81417 0.92731 1.86389 1.54359 1.76654 1.18894 1.22525 0.97516 0.94348 0.98289 0.89517 1.21300 0.87770 0.91369 0.97841 1.46042 1.36373 1.28221 1.26292 1.17921 0.82418 0.80561 0.84394 1.90787 1.59898 1.68486 1.22335 1.21028 1.00592 0.99342 0.98516 1.23109 0.90119 0.97042 0.90788 1.67977 1.10421 1.06622 1.33155 1.19046 0.95392 0.92272 0.91334 1.20860 0.95043 0.95123 1.00591 1.21000 0.99337 0.95792 0.95146 1.20959 0.96826 1.00382 0.95779 1.21086 0.95976 0.93687 0.99666 1.18848 0.98069 0.98000 0.96616 1.21978 0.90849 0.90698 0.98020 1.21317 0.93365 0.85693 0.97878 0.93688 0.87055 0.96266 0.77781 0.89807 0.91524 0.76529 0.81929 0.84406 0.85062 0.85238 0.84813 0.82853 0.95359 0.96285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.40 10.09 55.49 0.56 -25.85 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.97 3.39 -170.07 -0.58 -15.54 16 10 C 0.13 2.91 5.62 -2.53 -0.01 2.89 16 11 C 0.08 1.48 4.17 -24.57 -0.10 1.38 16 12 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 13 O -0.56 -10.12 12.22 -35.23 -0.43 -10.55 16 14 C -0.11 -1.76 2.95 -88.78 -0.26 -2.03 16 15 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 16 C 0.14 2.14 4.59 -4.04 -0.02 2.12 16 17 N -0.72 -9.38 5.35 -61.28 -0.33 -9.71 16 18 C 0.56 7.87 7.77 -12.37 -0.10 7.77 16 19 O -0.54 -9.27 16.38 5.31 0.09 -9.19 16 20 C -0.19 -2.25 5.89 -104.83 -0.62 -2.86 16 21 C 0.16 1.80 10.68 -17.10 -0.18 1.61 16 22 N -0.47 -5.67 10.30 -10.67 -0.11 -5.78 16 23 C 0.14 1.55 6.61 -84.78 -0.56 0.99 16 24 C -0.10 -0.85 9.97 -39.47 -0.39 -1.24 16 25 C -0.09 -0.61 9.94 -39.93 -0.40 -1.00 16 26 C -0.12 -0.76 9.96 -39.93 -0.40 -1.16 16 27 C -0.09 -0.65 9.77 -39.47 -0.39 -1.04 16 28 C -0.11 -1.15 5.74 -106.81 -0.61 -1.77 16 29 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 30 C 0.14 2.89 6.52 -3.06 -0.02 2.87 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.38 5.56 9.12 45.56 0.42 5.97 16 35 H 0.08 1.51 7.44 -51.93 -0.39 1.13 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 4.31 6.35 -40.82 -0.26 4.05 16 38 H 0.16 1.40 6.37 -52.49 -0.33 1.07 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.15 1.51 7.70 -52.49 -0.40 1.11 16 44 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -34.52 373.71 -9.89 -44.41 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.03 Total: 7.96 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -4.67 Total: 1.66 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.46 Total: -56.88 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.34 Total: -19.74 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.52 -9.89 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958438284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.991 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds