Wall clock time and date at job start Sat Apr 11 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47066 * 264.99864 * 3 2 1 5 5 H 1.48498 * 109.46716 * 24.99520 * 3 2 1 6 6 H 1.48498 * 109.47189 * 144.99835 * 3 2 1 7 7 C 1.38818 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99973 * 185.20284 * 7 2 1 9 9 N 1.36937 * 119.99371 * 5.19843 * 7 2 1 10 10 C 1.47019 * 125.65260 * 5.11846 * 9 7 2 11 11 C 1.54374 * 107.28592 * 181.05363 * 10 9 7 12 12 H 1.08996 * 110.70434 * 263.78375 * 11 10 9 13 13 O 1.42899 * 110.75050 * 140.50315 * 11 10 9 14 14 C 1.55148 * 102.92252 * 22.13957 * 11 10 9 15 15 H 1.08996 * 111.00968 * 82.63959 * 14 11 10 16 16 C 1.53001 * 111.00422 * 206.45556 * 14 11 10 17 17 N 1.46503 * 109.47244 * 181.81712 * 16 14 11 18 18 C 1.34776 * 119.99764 * 179.97438 * 17 16 14 19 19 O 1.21589 * 120.00309 * 0.02562 * 18 17 16 20 20 C 1.47564 * 119.99981 * 180.02562 * 18 17 16 21 21 C 1.38708 * 120.43455 * 354.05775 * 20 18 17 22 22 C 1.38994 * 120.75388 * 179.97438 * 21 20 18 23 23 C 1.36343 * 121.19340 * 359.97438 * 22 21 20 24 24 C 1.40353 * 119.92570 * 0.02562 * 23 22 21 25 25 C 1.40691 * 122.10156 * 180.02562 * 24 23 22 26 26 C 1.36269 * 118.66455 * 179.18756 * 25 24 23 27 27 N 1.32517 * 121.83762 * 0.76766 * 26 25 24 28 28 C 1.31320 * 122.71924 * 359.48502 * 27 26 25 29 29 C 1.40133 * 119.91683 * 0.02562 * 28 27 26 30 30 C 1.47430 * 125.64399 * 185.07103 * 9 7 2 31 31 H 0.96997 * 120.00113 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.87997 * 300.43626 * 10 9 7 33 33 H 1.08998 * 109.88662 * 61.44300 * 10 9 7 34 34 H 0.96704 * 114.00335 * 66.48731 * 13 11 10 35 35 H 1.08999 * 109.47675 * 61.81400 * 16 14 11 36 36 H 1.09003 * 109.46857 * 301.81779 * 16 14 11 37 37 H 0.96995 * 120.00140 * 0.02562 * 17 16 14 38 38 H 1.08003 * 119.62161 * 359.97438 * 21 20 18 39 39 H 1.08002 * 119.40352 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.03844 * 179.97438 * 23 22 21 41 41 H 1.07992 * 120.66447 * 359.97312 * 25 24 23 42 42 H 1.07994 * 119.07966 * 180.25442 * 26 25 24 43 43 H 1.08001 * 120.03727 * 180.02562 * 28 27 26 44 44 H 1.08998 * 110.36414 * 37.06707 * 30 9 7 45 45 H 1.09001 * 110.36347 * 274.75000 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.6035 1.9854 -1.3947 5 1 1.3988 2.6809 0.5916 6 1 3.4909 1.4731 0.8031 7 6 2.0104 -1.2022 0.0005 8 1 3.0870 -1.2040 0.0854 9 7 1.3298 -2.3856 -0.1064 10 6 -0.1160 -2.5253 -0.3336 11 6 -0.4330 -4.0359 -0.3560 12 1 -0.4597 -4.4090 -1.3798 13 8 -1.6665 -4.3044 0.3137 14 6 0.7594 -4.6523 0.4221 15 1 0.5961 -4.5934 1.4982 16 6 1.0101 -6.0974 -0.0132 17 7 2.1123 -6.6596 0.7713 18 6 2.5113 -7.9294 0.5592 19 8 1.9568 -8.6081 -0.2836 20 6 3.6210 -8.4958 1.3497 21 6 4.3401 -7.6956 2.2252 22 6 5.3863 -8.2224 2.9735 23 6 5.7363 -9.5361 2.8710 24 6 5.0351 -10.3814 1.9971 25 6 5.3569 -11.7437 1.8558 26 6 4.6189 -12.5043 0.9992 27 7 3.6230 -11.9922 0.2906 28 6 3.2721 -10.7292 0.3690 29 6 3.9620 -9.8642 1.2289 30 6 1.9259 -3.7309 -0.0137 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6664 -2.0435 0.4745 33 1 -0.3868 -2.0727 -1.2875 34 1 -2.4435 -3.9403 -0.1322 35 1 1.2699 -6.1183 -1.0716 36 1 0.1088 -6.6880 0.1513 37 1 2.5544 -6.1183 1.4438 38 1 4.0842 -6.6512 2.3266 39 1 5.9314 -7.5796 3.6489 40 1 6.5527 -9.9257 3.4610 41 1 6.1644 -12.1808 2.4244 42 1 4.8575 -13.5517 0.8887 43 1 2.4527 -10.3577 -0.2286 44 1 2.7191 -3.7436 0.7338 45 1 2.3129 -4.0419 -0.9840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958554602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:16 Heat of formation + Delta-G solvation = 4.518260 kcal Electronic energy + Delta-G solvation = -28633.288538 eV Core-core repulsion = 24616.572120 eV Total energy + Delta-G solvation = -4016.716418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32819 -39.62635 -38.27570 -37.46162 -35.28615 -34.78789 -33.26546 -32.31329 -31.47162 -30.46863 -29.36216 -27.62283 -25.81106 -24.84852 -23.95286 -23.74400 -22.79084 -21.00024 -20.33943 -19.91468 -18.26031 -18.07256 -17.08726 -16.93446 -16.80842 -16.31313 -15.86520 -15.56143 -15.21843 -15.02281 -14.64591 -14.45996 -14.15878 -13.98647 -13.89360 -13.38868 -13.25960 -12.98551 -12.69222 -12.50218 -12.39256 -12.37120 -12.10424 -11.90622 -11.49558 -11.27138 -11.00810 -10.86049 -10.67109 -10.44839 -10.15998 -10.05613 -9.90371 -9.83697 -9.56669 -9.46598 -9.26853 -9.14111 -8.72100 -8.39344 -6.95304 -5.79728 -3.16921 -0.19576 0.57759 1.35475 2.45952 2.96198 3.05418 3.34240 3.39114 3.41068 3.84322 4.17858 4.25357 4.35905 4.39603 4.45361 4.55225 4.61593 4.67637 4.76608 4.94646 4.98068 5.12528 5.25672 5.39101 5.39519 5.42314 5.43073 5.59955 5.62064 5.73728 5.79745 5.82841 5.94215 5.97613 5.99489 6.14059 6.25852 6.30681 6.33680 6.45323 6.54474 6.74866 7.26268 7.35208 7.49188 7.69316 7.80034 8.04968 8.13438 8.17085 9.09753 9.70890 10.34860 11.29969 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017763 B = 0.002344 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.972684 B =11943.101579 C =13138.737038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.146 3.854 11 C 0.084 3.916 12 H 0.057 0.943 13 O -0.566 6.566 14 C -0.109 4.109 15 H 0.090 0.910 16 C 0.132 3.868 17 N -0.712 5.712 18 C 0.558 3.442 19 O -0.534 6.534 20 C -0.099 4.099 21 C -0.077 4.077 22 C -0.105 4.105 23 C -0.088 4.088 24 C -0.031 4.031 25 C -0.164 4.164 26 C 0.077 3.923 27 N -0.490 5.490 28 C 0.146 3.854 29 C -0.079 4.079 30 C 0.141 3.859 31 H 0.253 0.747 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.376 0.624 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.402 0.598 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.201 0.799 44 H 0.042 0.958 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.847 -19.539 5.787 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.021 3.979 11 C 0.024 3.976 12 H 0.075 0.925 13 O -0.371 6.371 14 C -0.128 4.128 15 H 0.109 0.891 16 C 0.009 3.991 17 N -0.363 5.363 18 C 0.346 3.654 19 O -0.414 6.414 20 C -0.104 4.104 21 C -0.096 4.096 22 C -0.124 4.124 23 C -0.106 4.106 24 C -0.036 4.036 25 C -0.184 4.184 26 C -0.066 4.066 27 N -0.198 5.198 28 C -0.024 4.024 29 C -0.082 4.082 30 C 0.014 3.986 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.223 0.777 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.238 0.762 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.169 0.831 43 H 0.217 0.783 44 H 0.060 0.940 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.402 -20.730 5.083 22.939 hybrid contribution 0.921 2.125 0.584 2.388 sum 9.322 -18.605 5.668 21.568 Atomic orbital electron populations 1.69928 1.04960 1.25247 1.56556 1.24840 0.95724 0.97837 1.01938 0.86117 0.78551 0.83234 0.77709 1.21488 1.21631 1.20674 1.19036 0.90644 0.82346 1.44024 0.90297 1.44295 1.03531 0.99911 1.85080 1.21903 0.85977 0.88796 1.01223 1.23072 0.83133 0.97806 0.93569 0.92548 1.86424 1.16324 1.79991 1.54317 1.22622 0.96512 0.92176 1.01530 0.89140 1.21468 0.88816 0.93433 0.95425 1.45962 1.36621 1.12950 1.40733 1.18048 0.82716 0.81862 0.82789 1.90573 1.57003 1.58938 1.34854 1.19923 0.97798 0.93467 0.99167 1.21518 0.94399 0.99972 0.93753 1.20942 0.96838 0.95618 0.99050 1.21174 0.98887 0.93573 0.97008 1.18172 0.94911 0.94419 0.96098 1.21875 1.01952 0.93114 1.01416 1.22333 0.91439 1.00372 0.92487 1.67688 1.14991 1.14929 1.22225 1.24631 0.97312 0.87369 0.93062 1.18855 0.96884 0.93729 0.98737 1.21639 0.93458 0.85843 0.97629 0.93616 0.91035 0.94752 0.77665 0.90935 0.90735 0.76186 0.84651 0.84585 0.84678 0.84431 0.83080 0.78337 0.93982 0.95825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.21 10.40 55.49 0.58 -25.63 16 2 C -0.01 -0.18 5.46 -17.43 -0.10 -0.28 16 3 Si 0.91 21.45 29.56 -169.99 -5.02 16.43 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.23 -6.22 10.27 -15.06 -0.15 -6.38 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.58 3.39 -170.04 -0.58 -15.16 16 10 C 0.15 3.37 5.20 -3.04 -0.02 3.36 16 11 C 0.08 1.50 3.80 -24.87 -0.09 1.41 16 12 H 0.06 0.93 8.04 -51.93 -0.42 0.52 16 13 O -0.57 -9.48 13.39 -35.23 -0.47 -9.95 16 14 C -0.11 -1.77 2.79 -88.48 -0.25 -2.02 16 15 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 16 C 0.13 1.84 5.12 -4.04 -0.02 1.82 16 17 N -0.71 -8.64 5.40 -61.34 -0.33 -8.97 16 18 C 0.56 7.34 7.73 -12.46 -0.10 7.25 16 19 O -0.53 -8.39 13.48 5.29 0.07 -8.32 16 20 C -0.10 -1.12 5.90 -104.66 -0.62 -1.74 16 21 C -0.08 -0.67 9.51 -39.13 -0.37 -1.05 16 22 C -0.11 -0.76 9.93 -39.98 -0.40 -1.16 16 23 C -0.09 -0.67 9.79 -39.47 -0.39 -1.05 16 24 C -0.03 -0.31 5.74 -106.84 -0.61 -0.92 16 25 C -0.16 -1.41 9.88 -39.36 -0.39 -1.80 16 26 C 0.08 0.77 11.07 -17.96 -0.20 0.57 16 27 N -0.49 -6.34 10.30 -13.21 -0.14 -6.47 16 28 C 0.15 1.95 10.49 -17.06 -0.18 1.77 16 29 C -0.08 -0.96 5.76 -106.59 -0.61 -1.57 16 30 C 0.14 2.64 6.56 -2.53 -0.02 2.63 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.07 1.88 6.88 -51.93 -0.36 1.52 16 33 H 0.03 0.86 7.89 -51.93 -0.41 0.45 16 34 H 0.38 4.87 9.12 45.56 0.42 5.29 16 35 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.40 4.08 6.50 -40.82 -0.27 3.81 16 38 H 0.14 0.92 6.42 -52.48 -0.34 0.58 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.20 2.85 4.98 -52.49 -0.26 2.59 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.02 0.45 7.96 -51.93 -0.41 0.03 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -33.56 370.88 -9.78 -43.34 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.97 Total: 8.31 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -4.51 Total: 0.82 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.47 Total: -56.23 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.40 Total: -18.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.56 -9.78 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958554602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.863 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds