Wall clock time and date at job start Sat Apr 11 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47066 * 264.99864 * 3 2 1 5 5 H 1.48498 * 109.46716 * 24.99520 * 3 2 1 6 6 H 1.48498 * 109.47189 * 144.99835 * 3 2 1 7 7 C 1.38818 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99973 * 185.20284 * 7 2 1 9 9 N 1.36937 * 119.99371 * 5.19843 * 7 2 1 10 10 C 1.47019 * 125.65260 * 5.11846 * 9 7 2 11 11 C 1.54374 * 107.28592 * 181.05363 * 10 9 7 12 12 H 1.08996 * 110.70434 * 263.78375 * 11 10 9 13 13 O 1.42899 * 110.75050 * 140.50315 * 11 10 9 14 14 C 1.55148 * 102.92252 * 22.13957 * 11 10 9 15 15 H 1.08996 * 111.00968 * 82.63959 * 14 11 10 16 16 C 1.53001 * 111.00422 * 206.45556 * 14 11 10 17 17 N 1.46503 * 109.47244 * 181.81712 * 16 14 11 18 18 C 1.34776 * 119.99764 * 179.97438 * 17 16 14 19 19 O 1.21589 * 120.00309 * 0.02562 * 18 17 16 20 20 C 1.47564 * 119.99981 * 180.02562 * 18 17 16 21 21 C 1.38708 * 120.43455 * 354.05775 * 20 18 17 22 22 C 1.38994 * 120.75388 * 179.97438 * 21 20 18 23 23 C 1.36343 * 121.19340 * 359.97438 * 22 21 20 24 24 C 1.40353 * 119.92570 * 0.02562 * 23 22 21 25 25 C 1.40691 * 122.10156 * 180.02562 * 24 23 22 26 26 C 1.36269 * 118.66455 * 179.18756 * 25 24 23 27 27 N 1.32517 * 121.83762 * 0.76766 * 26 25 24 28 28 C 1.31320 * 122.71924 * 359.48502 * 27 26 25 29 29 C 1.40133 * 119.91683 * 0.02562 * 28 27 26 30 30 C 1.47430 * 125.64399 * 185.07103 * 9 7 2 31 31 H 0.96997 * 120.00113 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.87997 * 300.43626 * 10 9 7 33 33 H 1.08998 * 109.88662 * 61.44300 * 10 9 7 34 34 H 0.96704 * 114.00335 * 66.48731 * 13 11 10 35 35 H 1.08999 * 109.47675 * 61.81400 * 16 14 11 36 36 H 1.09003 * 109.46857 * 301.81779 * 16 14 11 37 37 H 0.96995 * 120.00140 * 0.02562 * 17 16 14 38 38 H 1.08003 * 119.62161 * 359.97438 * 21 20 18 39 39 H 1.08002 * 119.40352 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.03844 * 179.97438 * 23 22 21 41 41 H 1.07992 * 120.66447 * 359.97312 * 25 24 23 42 42 H 1.07994 * 119.07966 * 180.25442 * 26 25 24 43 43 H 1.08001 * 120.03727 * 180.02562 * 28 27 26 44 44 H 1.08998 * 110.36414 * 37.06707 * 30 9 7 45 45 H 1.09001 * 110.36347 * 274.75000 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.6035 1.9854 -1.3947 5 1 1.3988 2.6809 0.5916 6 1 3.4909 1.4731 0.8031 7 6 2.0104 -1.2022 0.0005 8 1 3.0870 -1.2040 0.0854 9 7 1.3298 -2.3856 -0.1064 10 6 -0.1160 -2.5253 -0.3336 11 6 -0.4330 -4.0359 -0.3560 12 1 -0.4597 -4.4090 -1.3798 13 8 -1.6665 -4.3044 0.3137 14 6 0.7594 -4.6523 0.4221 15 1 0.5961 -4.5934 1.4982 16 6 1.0101 -6.0974 -0.0132 17 7 2.1123 -6.6596 0.7713 18 6 2.5113 -7.9294 0.5592 19 8 1.9568 -8.6081 -0.2836 20 6 3.6210 -8.4958 1.3497 21 6 4.3401 -7.6956 2.2252 22 6 5.3863 -8.2224 2.9735 23 6 5.7363 -9.5361 2.8710 24 6 5.0351 -10.3814 1.9971 25 6 5.3569 -11.7437 1.8558 26 6 4.6189 -12.5043 0.9992 27 7 3.6230 -11.9922 0.2906 28 6 3.2721 -10.7292 0.3690 29 6 3.9620 -9.8642 1.2289 30 6 1.9259 -3.7309 -0.0137 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6664 -2.0435 0.4745 33 1 -0.3868 -2.0727 -1.2875 34 1 -2.4435 -3.9403 -0.1322 35 1 1.2699 -6.1183 -1.0716 36 1 0.1088 -6.6880 0.1513 37 1 2.5544 -6.1183 1.4438 38 1 4.0842 -6.6512 2.3266 39 1 5.9314 -7.5796 3.6489 40 1 6.5527 -9.9257 3.4610 41 1 6.1644 -12.1808 2.4244 42 1 4.8575 -13.5517 0.8887 43 1 2.4527 -10.3577 -0.2286 44 1 2.7191 -3.7436 0.7338 45 1 2.3129 -4.0419 -0.9840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958554602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:15 Heat of formation + Delta-G solvation = -20.219999 kcal Electronic energy + Delta-G solvation = -28634.361270 eV Core-core repulsion = 24616.572120 eV Total energy + Delta-G solvation = -4017.789149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10760 -40.65942 -39.71312 -38.19277 -36.65294 -36.20479 -34.19949 -33.84502 -32.18153 -31.74350 -30.50791 -29.24906 -27.31764 -25.89965 -25.13539 -24.46025 -23.84844 -22.30991 -21.77914 -21.21934 -19.21970 -18.83120 -18.74590 -18.21137 -17.73341 -17.28956 -16.91708 -16.82798 -16.50379 -16.04729 -15.78954 -15.68481 -15.31146 -15.18650 -14.69730 -14.60047 -14.41660 -14.28977 -13.99722 -13.72986 -13.69198 -13.20849 -13.07468 -13.04369 -13.00720 -12.71157 -12.54599 -12.42587 -12.30194 -11.91827 -11.79960 -11.48812 -11.18663 -10.96792 -10.81006 -10.71842 -10.39781 -10.21777 -10.16883 -9.09538 -8.92476 -7.84425 -5.23389 -0.91756 -0.12244 0.57633 1.47194 1.49156 1.56962 1.70731 1.98108 2.21498 2.48493 3.08285 3.22669 3.34172 3.45236 3.54565 3.56091 3.70124 3.75152 3.75815 3.85464 3.89450 3.95463 4.15201 4.20289 4.39992 4.41151 4.44259 4.56307 4.63582 4.70993 4.76840 4.80798 4.88474 4.89316 4.95451 5.04179 5.20319 5.27158 5.34183 5.34848 5.40039 5.52208 5.66794 5.73470 5.78909 6.18252 6.41026 6.88945 6.99409 7.06978 7.11151 7.74514 8.37894 9.23721 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017763 B = 0.002344 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.972684 B =11943.101579 C =13138.737038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.241 4.241 8 H 0.088 0.912 9 N -0.624 5.624 10 C 0.155 3.845 11 C 0.097 3.903 12 H 0.075 0.925 13 O -0.569 6.569 14 C -0.090 4.090 15 H 0.088 0.912 16 C 0.146 3.854 17 N -0.705 5.705 18 C 0.557 3.443 19 O -0.568 6.568 20 C -0.131 4.131 21 C -0.061 4.061 22 C -0.109 4.109 23 C -0.072 4.072 24 C -0.052 4.052 25 C -0.142 4.142 26 C 0.051 3.949 27 N -0.514 5.514 28 C 0.112 3.888 29 C -0.093 4.093 30 C 0.139 3.861 31 H 0.246 0.754 32 H 0.033 0.967 33 H 0.002 0.998 34 H 0.393 0.607 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.413 0.587 38 H 0.155 0.845 39 H 0.172 0.828 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.060 0.940 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.054 -20.532 7.907 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.370 4.370 8 H 0.106 0.894 9 N -0.351 5.351 10 C 0.029 3.971 11 C 0.037 3.963 12 H 0.093 0.907 13 O -0.376 6.376 14 C -0.109 4.109 15 H 0.106 0.894 16 C 0.022 3.978 17 N -0.356 5.356 18 C 0.346 3.654 19 O -0.450 6.450 20 C -0.136 4.136 21 C -0.080 4.080 22 C -0.128 4.128 23 C -0.090 4.090 24 C -0.057 4.057 25 C -0.162 4.162 26 C -0.092 4.092 27 N -0.223 5.223 28 C -0.057 4.057 29 C -0.096 4.096 30 C 0.014 3.986 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.242 0.758 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.251 0.749 38 H 0.172 0.828 39 H 0.190 0.810 40 H 0.191 0.809 41 H 0.197 0.803 42 H 0.194 0.806 43 H 0.194 0.806 44 H 0.078 0.922 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 11.626 -21.740 7.214 25.687 hybrid contribution 0.004 2.372 -0.015 2.372 sum 11.630 -19.368 7.198 23.711 Atomic orbital electron populations 1.70156 1.06365 1.25300 1.58105 1.25684 0.96579 1.01158 1.02613 0.85102 0.77670 0.79024 0.77577 1.21444 1.22389 1.19016 1.19471 0.91356 0.83534 1.42634 0.89400 1.44601 1.04192 1.01341 1.84954 1.21674 0.85483 0.92032 0.97933 1.22864 0.84218 0.94185 0.95075 0.90724 1.86394 1.16632 1.79811 1.54806 1.22414 0.94604 0.92884 1.01026 0.89406 1.21170 0.89474 0.91679 0.95457 1.45799 1.36166 1.12916 1.40767 1.18405 0.82890 0.81606 0.82454 1.90570 1.58274 1.59744 1.36412 1.19768 0.98771 0.93793 1.01288 1.21873 0.93599 1.00536 0.91944 1.21372 0.96282 0.96137 0.98997 1.21640 0.98587 0.93291 0.95475 1.18552 0.94842 0.95618 0.96694 1.22325 1.01594 0.92354 0.99880 1.22813 0.91400 1.01875 0.93115 1.67579 1.16399 1.14989 1.23354 1.24302 0.98268 0.88257 0.94845 1.18968 0.97688 0.93950 0.99021 1.21816 0.94582 0.83723 0.98512 0.94437 0.94858 0.98021 0.75767 0.91199 0.91025 0.74897 0.82754 0.81049 0.80874 0.80347 0.80555 0.80648 0.92192 0.95091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.94 10.40 21.65 0.23 -55.72 16 2 C -0.07 -3.72 5.46 84.86 0.46 -3.26 16 3 Si 0.98 44.41 29.56 68.60 2.03 46.44 16 4 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.24 -12.92 10.27 84.04 0.86 -12.05 16 8 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -30.40 3.39 -691.88 -2.35 -32.75 16 10 C 0.15 7.33 5.20 86.75 0.45 7.79 16 11 C 0.10 3.43 3.80 31.80 0.12 3.56 16 12 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 13 O -0.57 -18.79 13.39 -148.98 -1.99 -20.78 16 14 C -0.09 -2.83 2.79 -9.40 -0.03 -2.85 16 15 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 16 C 0.15 3.95 5.12 86.38 0.44 4.39 16 17 N -0.71 -16.41 5.40 -466.23 -2.52 -18.92 16 18 C 0.56 14.77 7.73 86.70 0.67 15.44 16 19 O -0.57 -18.81 13.48 -4.00 -0.05 -18.86 16 20 C -0.13 -2.90 5.90 -19.89 -0.12 -3.02 16 21 C -0.06 -0.88 9.51 22.56 0.21 -0.67 16 22 C -0.11 -1.08 9.93 22.01 0.22 -0.87 16 23 C -0.07 -0.76 9.79 22.34 0.22 -0.54 16 24 C -0.05 -0.91 5.74 -21.30 -0.12 -1.03 16 25 C -0.14 -2.04 9.88 22.41 0.22 -1.82 16 26 C 0.05 0.96 11.07 84.13 0.93 1.90 16 27 N -0.51 -13.81 10.30 -195.72 -2.02 -15.83 16 28 C 0.11 3.20 10.49 85.23 0.89 4.09 16 29 C -0.09 -2.25 5.76 -21.14 -0.12 -2.37 16 30 C 0.14 5.04 6.56 86.85 0.57 5.61 16 31 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.03 1.82 6.88 -2.39 -0.02 1.81 16 33 H 0.00 0.09 7.89 -2.39 -0.02 0.07 16 34 H 0.39 10.03 9.12 -74.05 -0.68 9.36 16 35 H 0.07 1.96 8.04 -2.39 -0.02 1.94 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.41 7.55 6.50 -92.71 -0.60 6.95 16 38 H 0.15 1.55 6.42 -2.91 -0.02 1.53 16 39 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 40 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 42 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 43 H 0.18 5.65 4.98 -2.92 -0.01 5.64 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.03 1.11 7.96 -2.39 -0.02 1.09 16 Total: -1.00 -77.41 370.88 -1.01 -78.42 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.23 Total: 23.70 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 5.89 Total: 14.30 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -6.66 Total: -123.22 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -2.05 Total: -39.64 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -77.41 -1.01 -78.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958554602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.203 kcal (2) G-P(sol) polarization free energy of solvation -77.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds