Wall clock time and date at job start Sat Apr 11 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00274 * 2 1 4 4 H 1.48501 * 109.47570 * 270.00188 * 3 2 1 5 5 H 1.48493 * 109.47153 * 30.00384 * 3 2 1 6 6 H 1.48502 * 109.47163 * 150.00002 * 3 2 1 7 7 C 1.38814 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00270 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00031 * 359.97438 * 7 2 1 10 10 C 1.47021 * 125.64811 * 179.97438 * 9 7 2 11 11 C 1.54324 * 107.27179 * 178.90645 * 10 9 7 12 12 H 1.09006 * 110.72320 * 96.34706 * 11 10 9 13 13 C 1.53004 * 110.72276 * 219.44498 * 11 10 9 14 14 N 1.46496 * 109.46868 * 293.54523 * 13 11 10 15 15 C 1.34776 * 119.99945 * 179.97438 * 14 13 11 16 16 O 1.21588 * 120.00229 * 0.02562 * 15 14 13 17 17 C 1.47567 * 120.00136 * 180.02562 * 15 14 13 18 18 C 1.38705 * 120.43541 * 354.09961 * 17 15 14 19 19 C 1.39000 * 120.75454 * 180.02562 * 18 17 15 20 20 C 1.36345 * 121.19092 * 359.97438 * 19 18 17 21 21 C 1.40355 * 119.92741 * 0.02562 * 20 19 18 22 22 C 1.40684 * 122.10066 * 179.97438 * 21 20 19 23 23 C 1.36268 * 118.66496 * 180.02562 * 22 21 20 24 24 N 1.32509 * 121.84038 * 0.02562 * 23 22 21 25 25 C 1.31317 * 122.72006 * 359.97438 * 24 23 22 26 26 C 1.40129 * 119.91917 * 359.73703 * 25 24 23 27 27 C 1.55157 * 102.94352 * 337.80708 * 11 10 9 28 28 H 1.08999 * 111.00306 * 277.43001 * 27 11 10 29 29 O 1.42902 * 111.00827 * 153.57317 * 27 11 10 30 30 C 1.47426 * 125.64894 * 359.95796 * 9 7 2 31 31 H 0.96999 * 119.99857 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.88449 * 59.48975 * 10 9 7 33 33 H 1.09000 * 109.88405 * 298.32259 * 10 9 7 34 34 H 1.09000 * 109.46691 * 53.54331 * 13 11 10 35 35 H 1.09000 * 109.47102 * 173.54280 * 13 11 10 36 36 H 0.97006 * 120.00452 * 359.97438 * 14 13 11 37 37 H 1.07999 * 119.61840 * 0.02562 * 18 17 15 38 38 H 1.08001 * 119.40691 * 179.97438 * 19 18 17 39 39 H 1.07989 * 120.03678 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.66853 * 0.02562 * 22 21 20 41 41 H 1.07996 * 119.07808 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.03890 * 179.97438 * 25 24 23 43 43 H 0.96695 * 114.00096 * 179.97438 * 29 27 11 44 44 H 1.08993 * 110.36857 * 323.00611 * 30 9 7 45 45 H 1.09007 * 110.36487 * 85.21823 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6525 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.9317 -3.7275 -0.0016 11 6 0.7784 -4.7524 0.0270 12 1 0.5465 -5.1004 -0.9797 13 6 1.1242 -5.9314 0.9388 14 7 2.2392 -6.6853 0.3604 15 6 2.7182 -7.7734 0.9953 16 8 2.2247 -8.1295 2.0479 17 6 3.8417 -8.5325 0.4130 18 6 4.3318 -8.2091 -0.8437 19 6 5.3894 -8.9201 -1.3987 20 6 5.9756 -9.9523 -0.7279 21 6 5.5110 -10.3130 0.5464 22 6 6.0815 -11.3702 1.2786 23 6 5.5748 -11.6608 2.5097 24 7 4.5655 -10.9773 3.0294 25 6 3.9861 -9.9797 2.4021 26 6 4.4367 -9.5969 1.1316 27 6 -0.4009 -3.9324 0.6136 28 1 -0.3498 -3.8982 1.7018 29 8 -1.6566 -4.4572 0.1780 30 6 -0.1416 -2.5332 0.0009 31 1 -0.4850 0.8400 0.0004 32 1 2.5593 -3.8511 0.8809 33 1 2.5269 -3.8643 -0.9044 34 1 1.4093 -5.5584 1.9225 35 1 0.2559 -6.5832 1.0350 36 1 2.6328 -6.4014 -0.4796 37 1 3.8864 -7.3957 -1.3971 38 1 5.7534 -8.6500 -2.3790 39 1 6.7959 -10.4923 -1.1770 40 1 6.9044 -11.9400 0.8731 41 1 6.0080 -12.4707 3.0778 42 1 3.1659 -9.4525 2.8665 43 1 -2.4234 -3.9772 0.5196 44 1 -0.5988 -1.7587 0.6166 45 1 -0.5285 -2.4851 -1.0171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958554607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:23 Heat of formation + Delta-G solvation = 5.914456 kcal Electronic energy + Delta-G solvation = -28657.654324 eV Core-core repulsion = 24640.998450 eV Total energy + Delta-G solvation = -4016.655874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32740 -39.63106 -38.26240 -37.46105 -35.29446 -34.79855 -33.26542 -32.33702 -31.47216 -30.46388 -29.36468 -27.59970 -25.81704 -24.86050 -23.95542 -23.74384 -22.78728 -21.03905 -20.30604 -19.81954 -18.26430 -18.06700 -17.13150 -16.95328 -16.85808 -16.31392 -15.87368 -15.52485 -15.22088 -15.02901 -14.68140 -14.49215 -14.06305 -13.98086 -13.84296 -13.45075 -13.07739 -12.98648 -12.93412 -12.44785 -12.39502 -12.34411 -12.04446 -11.87575 -11.61176 -11.30186 -11.03366 -10.86432 -10.69657 -10.44593 -10.11805 -10.08884 -9.91351 -9.73635 -9.56053 -9.46716 -9.22381 -9.13159 -8.75822 -8.39228 -6.96901 -5.76562 -3.19342 -0.19526 0.57744 1.35814 2.45905 2.95787 3.06437 3.33830 3.39056 3.40977 3.84623 4.17754 4.24884 4.34830 4.38345 4.45394 4.55200 4.61568 4.65889 4.76302 4.94949 4.98088 5.16384 5.25670 5.38817 5.39610 5.41802 5.43011 5.59830 5.61367 5.74128 5.82355 5.87473 5.96596 5.97754 5.99704 6.12823 6.27412 6.32084 6.35678 6.49360 6.55581 6.73670 7.30134 7.35236 7.49087 7.69376 7.80658 8.05382 8.11027 8.23781 9.09487 9.70338 10.33020 11.27460 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002348 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.206994 B =11920.301603 C =12702.973834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.917 3.083 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.140 3.860 11 C -0.106 4.106 12 H 0.087 0.913 13 C 0.132 3.868 14 N -0.713 5.713 15 C 0.558 3.442 16 O -0.534 6.534 17 C -0.098 4.098 18 C -0.078 4.078 19 C -0.106 4.106 20 C -0.088 4.088 21 C -0.031 4.031 22 C -0.164 4.164 23 C 0.077 3.923 24 N -0.490 5.490 25 C 0.146 3.854 26 C -0.079 4.079 27 C 0.082 3.918 28 H 0.062 0.938 29 O -0.569 6.569 30 C 0.128 3.872 31 H 0.253 0.747 32 H 0.030 0.970 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.402 0.598 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.152 0.848 42 H 0.201 0.799 43 H 0.378 0.622 44 H 0.109 0.891 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.053 -20.331 -2.001 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.014 3.986 11 C -0.125 4.125 12 H 0.105 0.895 13 C 0.009 3.991 14 N -0.363 5.363 15 C 0.346 3.654 16 O -0.413 6.413 17 C -0.103 4.103 18 C -0.097 4.097 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.036 4.036 22 C -0.184 4.184 23 C -0.066 4.066 24 N -0.198 5.198 25 C -0.023 4.023 26 C -0.082 4.082 27 C 0.021 3.979 28 H 0.080 0.920 29 O -0.374 6.374 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.238 0.762 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.169 0.831 42 H 0.217 0.783 43 H 0.225 0.775 44 H 0.127 0.873 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.835 -21.098 -0.711 22.884 hybrid contribution 0.782 1.627 -1.255 2.199 sum 9.616 -19.471 -1.966 21.805 Atomic orbital electron populations 1.69758 1.04955 1.24995 1.57378 1.24809 0.95772 0.97876 1.02117 0.86038 0.78554 0.83079 0.77617 1.21545 1.21565 1.20611 1.19081 0.90540 0.82235 1.43493 0.90276 1.44312 1.01611 0.99799 1.87076 1.21375 0.93315 0.85584 0.98294 1.22422 0.96356 0.94120 0.99630 0.89512 1.21521 0.88231 0.92324 0.97042 1.45969 1.36022 1.28021 1.26299 1.18053 0.82507 0.80511 0.84376 1.90574 1.60076 1.68044 1.22590 1.19927 0.97556 0.97298 0.95497 1.21498 0.95539 0.98647 0.94022 1.20933 0.95658 0.95370 1.00514 1.21171 0.99319 0.96972 0.93174 1.18172 0.95032 0.95499 0.94880 1.21873 1.01812 0.98209 0.96493 1.22336 0.92850 0.98101 0.93308 1.67686 1.08837 1.06986 1.36297 1.24639 0.96896 0.90886 0.89927 1.18859 0.96575 0.96167 0.96619 1.23310 0.82113 0.95434 0.97013 0.92033 1.86364 1.15726 1.58996 1.76310 1.22553 0.85319 0.92558 0.99319 0.93578 0.95252 0.95824 0.90816 0.90715 0.76247 0.84727 0.84616 0.84679 0.84423 0.83069 0.78319 0.77550 0.87297 0.95953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.96 10.09 55.49 0.56 -25.40 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.23 -6.04 10.27 -15.06 -0.15 -6.20 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.60 -14.64 3.39 -170.06 -0.58 -15.22 16 10 C 0.14 2.68 6.52 -3.06 -0.02 2.66 16 11 C -0.11 -1.73 2.75 -88.78 -0.24 -1.98 16 12 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 13 C 0.13 1.89 4.99 -4.04 -0.02 1.87 16 14 N -0.71 -8.77 5.35 -61.34 -0.33 -9.10 16 15 C 0.56 7.45 7.73 -12.46 -0.10 7.36 16 16 O -0.53 -8.53 13.47 5.29 0.07 -8.45 16 17 C -0.10 -1.12 5.90 -104.66 -0.62 -1.74 16 18 C -0.08 -0.68 9.51 -39.13 -0.37 -1.05 16 19 C -0.11 -0.76 9.93 -39.98 -0.40 -1.15 16 20 C -0.09 -0.67 9.79 -39.47 -0.39 -1.05 16 21 C -0.03 -0.31 5.75 -106.83 -0.61 -0.92 16 22 C -0.16 -1.43 9.88 -39.37 -0.39 -1.82 16 23 C 0.08 0.78 11.07 -17.97 -0.20 0.58 16 24 N -0.49 -6.42 10.30 -13.22 -0.14 -6.56 16 25 C 0.15 1.98 10.49 -17.06 -0.18 1.80 16 26 C -0.08 -0.97 5.76 -106.59 -0.61 -1.59 16 27 C 0.08 1.48 3.88 -24.57 -0.10 1.39 16 28 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 29 O -0.57 -9.42 13.47 -35.23 -0.47 -9.89 16 30 C 0.13 2.95 5.62 -2.52 -0.01 2.94 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.40 4.07 6.40 -40.82 -0.26 3.81 16 37 H 0.13 0.88 6.42 -52.49 -0.34 0.55 16 38 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.20 2.91 4.98 -52.49 -0.26 2.65 16 43 H 0.38 4.84 9.12 45.56 0.42 5.26 16 44 H 0.11 2.81 5.87 -51.93 -0.31 2.51 16 45 H 0.02 0.57 8.14 -51.92 -0.42 0.14 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -33.20 369.89 -9.76 -42.96 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.92 Total: 8.94 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -4.51 Total: 0.73 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.48 Total: -56.28 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.40 Total: -18.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.20 -9.76 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958554607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.878 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds