Wall clock time and date at job start Sat Apr 11 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00274 * 2 1 4 4 H 1.48501 * 109.47570 * 270.00188 * 3 2 1 5 5 H 1.48493 * 109.47153 * 30.00384 * 3 2 1 6 6 H 1.48502 * 109.47163 * 150.00002 * 3 2 1 7 7 C 1.38814 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00270 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00031 * 359.97438 * 7 2 1 10 10 C 1.47021 * 125.64811 * 179.97438 * 9 7 2 11 11 C 1.54324 * 107.27179 * 178.90645 * 10 9 7 12 12 H 1.09006 * 110.72320 * 96.34706 * 11 10 9 13 13 C 1.53004 * 110.72276 * 219.44498 * 11 10 9 14 14 N 1.46496 * 109.46868 * 293.54523 * 13 11 10 15 15 C 1.34776 * 119.99945 * 179.97438 * 14 13 11 16 16 O 1.21588 * 120.00229 * 0.02562 * 15 14 13 17 17 C 1.47567 * 120.00136 * 180.02562 * 15 14 13 18 18 C 1.38705 * 120.43541 * 354.09961 * 17 15 14 19 19 C 1.39000 * 120.75454 * 180.02562 * 18 17 15 20 20 C 1.36345 * 121.19092 * 359.97438 * 19 18 17 21 21 C 1.40355 * 119.92741 * 0.02562 * 20 19 18 22 22 C 1.40684 * 122.10066 * 179.97438 * 21 20 19 23 23 C 1.36268 * 118.66496 * 180.02562 * 22 21 20 24 24 N 1.32509 * 121.84038 * 0.02562 * 23 22 21 25 25 C 1.31317 * 122.72006 * 359.97438 * 24 23 22 26 26 C 1.40129 * 119.91917 * 359.73703 * 25 24 23 27 27 C 1.55157 * 102.94352 * 337.80708 * 11 10 9 28 28 H 1.08999 * 111.00306 * 277.43001 * 27 11 10 29 29 O 1.42902 * 111.00827 * 153.57317 * 27 11 10 30 30 C 1.47426 * 125.64894 * 359.95796 * 9 7 2 31 31 H 0.96999 * 119.99857 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.88449 * 59.48975 * 10 9 7 33 33 H 1.09000 * 109.88405 * 298.32259 * 10 9 7 34 34 H 1.09000 * 109.46691 * 53.54331 * 13 11 10 35 35 H 1.09000 * 109.47102 * 173.54280 * 13 11 10 36 36 H 0.97006 * 120.00452 * 359.97438 * 14 13 11 37 37 H 1.07999 * 119.61840 * 0.02562 * 18 17 15 38 38 H 1.08001 * 119.40691 * 179.97438 * 19 18 17 39 39 H 1.07989 * 120.03678 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.66853 * 0.02562 * 22 21 20 41 41 H 1.07996 * 119.07808 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.03890 * 179.97438 * 25 24 23 43 43 H 0.96695 * 114.00096 * 179.97438 * 29 27 11 44 44 H 1.08993 * 110.36857 * 323.00611 * 30 9 7 45 45 H 1.09007 * 110.36487 * 85.21823 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6525 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.9317 -3.7275 -0.0016 11 6 0.7784 -4.7524 0.0270 12 1 0.5465 -5.1004 -0.9797 13 6 1.1242 -5.9314 0.9388 14 7 2.2392 -6.6853 0.3604 15 6 2.7182 -7.7734 0.9953 16 8 2.2247 -8.1295 2.0479 17 6 3.8417 -8.5325 0.4130 18 6 4.3318 -8.2091 -0.8437 19 6 5.3894 -8.9201 -1.3987 20 6 5.9756 -9.9523 -0.7279 21 6 5.5110 -10.3130 0.5464 22 6 6.0815 -11.3702 1.2786 23 6 5.5748 -11.6608 2.5097 24 7 4.5655 -10.9773 3.0294 25 6 3.9861 -9.9797 2.4021 26 6 4.4367 -9.5969 1.1316 27 6 -0.4009 -3.9324 0.6136 28 1 -0.3498 -3.8982 1.7018 29 8 -1.6566 -4.4572 0.1780 30 6 -0.1416 -2.5332 0.0009 31 1 -0.4850 0.8400 0.0004 32 1 2.5593 -3.8511 0.8809 33 1 2.5269 -3.8643 -0.9044 34 1 1.4093 -5.5584 1.9225 35 1 0.2559 -6.5832 1.0350 36 1 2.6328 -6.4014 -0.4796 37 1 3.8864 -7.3957 -1.3971 38 1 5.7534 -8.6500 -2.3790 39 1 6.7959 -10.4923 -1.1770 40 1 6.9044 -11.9400 0.8731 41 1 6.0080 -12.4707 3.0778 42 1 3.1659 -9.4525 2.8665 43 1 -2.4234 -3.9772 0.5196 44 1 -0.5988 -1.7587 0.6166 45 1 -0.5285 -2.4851 -1.0171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958554607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:22 Heat of formation + Delta-G solvation = -18.423960 kcal Electronic energy + Delta-G solvation = -28658.709717 eV Core-core repulsion = 24640.998450 eV Total energy + Delta-G solvation = -4017.711267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.11703 -40.68089 -39.70760 -38.19942 -36.66595 -36.23145 -34.21771 -33.85400 -32.18750 -31.74677 -30.51726 -29.22767 -27.34620 -25.90893 -25.14198 -24.46597 -23.86210 -22.39221 -21.68793 -21.17563 -19.22422 -18.84580 -18.80827 -18.28079 -17.74688 -17.27169 -16.96404 -16.88202 -16.49933 -15.99470 -15.75045 -15.64408 -15.36572 -15.10763 -14.74292 -14.64043 -14.41626 -14.33216 -13.99857 -13.73569 -13.62882 -13.27763 -13.11613 -13.05202 -13.02008 -12.76138 -12.55988 -12.39414 -12.32296 -11.90041 -11.86717 -11.38531 -11.19310 -10.99814 -10.78882 -10.73341 -10.40308 -10.23810 -10.17528 -9.10145 -8.92525 -7.80009 -5.25047 -0.92385 -0.12705 0.56926 1.47769 1.48828 1.57589 1.69813 1.96555 2.20962 2.47532 3.07689 3.19115 3.30740 3.44291 3.53314 3.59128 3.72208 3.73844 3.75932 3.84755 3.91452 3.95122 4.10636 4.19733 4.39524 4.42253 4.44837 4.56055 4.61570 4.70164 4.76466 4.80202 4.88083 4.88679 4.95911 5.04026 5.19620 5.25945 5.33997 5.34909 5.43073 5.48519 5.66359 5.74160 5.78449 6.24828 6.39869 6.88258 6.98785 7.07423 7.10318 7.73941 8.36287 9.21886 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002348 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.206994 B =11920.301603 C =12702.973834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.624 5.624 10 C 0.139 3.861 11 C -0.088 4.088 12 H 0.096 0.904 13 C 0.146 3.854 14 N -0.705 5.705 15 C 0.556 3.444 16 O -0.569 6.569 17 C -0.132 4.132 18 C -0.060 4.060 19 C -0.109 4.109 20 C -0.072 4.072 21 C -0.052 4.052 22 C -0.142 4.142 23 C 0.051 3.949 24 N -0.514 5.514 25 C 0.111 3.889 26 C -0.094 4.094 27 C 0.096 3.904 28 H 0.066 0.934 29 O -0.568 6.568 30 C 0.133 3.867 31 H 0.248 0.752 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.414 0.586 37 H 0.156 0.844 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.180 0.820 41 H 0.177 0.823 42 H 0.176 0.824 43 H 0.394 0.606 44 H 0.078 0.922 45 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.908 -21.942 -4.182 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.103 0.897 9 N -0.351 5.351 10 C 0.014 3.986 11 C -0.107 4.107 12 H 0.114 0.886 13 C 0.022 3.978 14 N -0.356 5.356 15 C 0.346 3.654 16 O -0.451 6.451 17 C -0.137 4.137 18 C -0.079 4.079 19 C -0.127 4.127 20 C -0.090 4.090 21 C -0.057 4.057 22 C -0.161 4.161 23 C -0.092 4.092 24 N -0.223 5.223 25 C -0.058 4.058 26 C -0.097 4.097 27 C 0.035 3.965 28 H 0.084 0.916 29 O -0.375 6.375 30 C 0.007 3.993 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.252 0.748 37 H 0.174 0.826 38 H 0.191 0.809 39 H 0.192 0.808 40 H 0.197 0.803 41 H 0.195 0.805 42 H 0.192 0.808 43 H 0.244 0.756 44 H 0.096 0.904 45 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 11.698 -22.727 -2.908 25.725 hybrid contribution -0.035 2.051 -0.649 2.152 sum 11.663 -20.675 -3.556 24.003 Atomic orbital electron populations 1.70005 1.06208 1.25126 1.58544 1.25634 0.96651 1.01038 1.02628 0.85048 0.77647 0.79027 0.77431 1.21339 1.22135 1.19384 1.19465 0.91126 0.83473 1.42589 0.89709 1.44595 1.02334 1.01114 1.87043 1.21535 0.94267 0.83875 0.98933 1.22246 0.94362 0.93724 1.00363 0.88589 1.21204 0.88965 0.91591 0.96037 1.45790 1.35491 1.27672 1.26668 1.18441 0.82732 0.80376 0.83886 1.90572 1.61314 1.68976 1.24223 1.19764 0.98335 0.98421 0.97166 1.21878 0.95044 0.98430 0.92515 1.21381 0.94731 0.94752 1.01880 1.21647 0.99299 0.96465 0.91556 1.18556 0.94819 0.95972 0.96362 1.22330 1.01466 0.97008 0.95308 1.22816 0.92760 0.98930 0.94741 1.67571 1.10056 1.07298 1.37403 1.24295 0.97809 0.92242 0.91429 1.18974 0.97599 0.96864 0.96226 1.22995 0.83572 0.92973 0.96931 0.91567 1.86339 1.15790 1.58927 1.76486 1.22318 0.84876 0.94757 0.97305 0.94262 0.95019 0.94157 0.91952 0.90822 0.74834 0.82633 0.80910 0.80820 0.80286 0.80549 0.80753 0.75649 0.90441 0.98851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.96 10.09 21.65 0.22 -54.74 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.98 44.39 29.55 68.60 2.03 46.42 16 4 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.24 -12.81 10.27 84.03 0.86 -11.95 16 8 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.62 -30.61 3.39 -691.94 -2.35 -32.96 16 10 C 0.14 5.18 6.52 86.73 0.57 5.74 16 11 C -0.09 -2.78 2.75 -9.60 -0.03 -2.80 16 12 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 13 C 0.15 4.10 4.99 86.38 0.43 4.53 16 14 N -0.70 -16.77 5.35 -466.24 -2.49 -19.26 16 15 C 0.56 15.11 7.73 86.70 0.67 15.78 16 16 O -0.57 -19.38 13.47 -3.99 -0.05 -19.43 16 17 C -0.13 -2.96 5.90 -19.89 -0.12 -3.07 16 18 C -0.06 -0.86 9.51 22.56 0.21 -0.65 16 19 C -0.11 -1.05 9.93 22.01 0.22 -0.83 16 20 C -0.07 -0.75 9.79 22.34 0.22 -0.53 16 21 C -0.05 -0.92 5.75 -21.30 -0.12 -1.04 16 22 C -0.14 -2.07 9.88 22.41 0.22 -1.84 16 23 C 0.05 0.98 11.07 84.13 0.93 1.91 16 24 N -0.51 -14.10 10.30 -195.73 -2.02 -16.12 16 25 C 0.11 3.24 10.49 85.23 0.89 4.13 16 26 C -0.09 -2.30 5.76 -21.14 -0.12 -2.42 16 27 C 0.10 3.48 3.88 31.99 0.12 3.60 16 28 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 29 O -0.57 -18.37 13.47 -148.98 -2.01 -20.37 16 30 C 0.13 6.31 5.62 86.86 0.49 6.80 16 31 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.03 1.18 7.76 -2.39 -0.02 1.17 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.92 8.06 -2.39 -0.02 1.90 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.41 7.56 6.40 -92.70 -0.59 6.97 16 37 H 0.16 1.47 6.42 -2.91 -0.02 1.45 16 38 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 39 H 0.17 0.47 8.06 -2.92 -0.02 0.44 16 40 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.18 5.77 4.98 -2.93 -0.01 5.76 16 43 H 0.39 9.86 9.12 -74.06 -0.68 9.18 16 44 H 0.08 4.17 5.87 -2.39 -0.01 4.15 16 45 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 Total: -1.00 -76.54 369.89 -0.97 -77.51 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.22 Total: 24.81 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 5.92 Total: 14.14 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.64 Total: -123.07 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -2.06 Total: -39.80 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -76.54 -0.97 -77.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958554607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.083 kcal (2) G-P(sol) polarization free energy of solvation -76.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds