Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47297 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47095 * 119.99979 * 3 2 1 7 7 C 1.38813 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00034 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64882 * 0.03719 * 9 7 2 11 11 C 1.54314 * 107.27289 * 181.02803 * 10 9 7 12 12 H 1.09004 * 110.87338 * 140.63007 * 11 10 9 13 13 O 1.42903 * 110.72054 * 263.82722 * 11 10 9 14 14 C 1.55152 * 102.94606 * 22.19374 * 11 10 9 15 15 H 1.09005 * 111.00538 * 82.57095 * 14 11 10 16 16 C 1.53004 * 111.00508 * 206.42537 * 14 11 10 17 17 N 1.46503 * 109.46705 * 184.99842 * 16 14 11 18 18 C 1.34781 * 119.99750 * 179.97438 * 17 16 14 19 19 O 1.21542 * 119.99793 * 0.02562 * 18 17 16 20 20 C 1.47884 * 119.99839 * 179.97438 * 18 17 16 21 21 C 1.40602 * 119.73392 * 0.02562 * 20 18 17 22 22 C 1.35850 * 120.95680 * 179.97438 * 21 20 18 23 23 C 1.40494 * 119.87877 * 359.97438 * 22 21 20 24 24 C 1.40482 * 121.84868 * 180.02562 * 23 22 21 25 25 N 1.31215 * 119.94167 * 179.97438 * 24 23 22 26 26 C 1.32554 * 122.80624 * 0.02562 * 25 24 23 27 27 C 1.36223 * 121.84294 * 359.97438 * 26 25 24 28 28 C 1.40760 * 118.67670 * 0.02562 * 27 26 25 29 29 C 1.38531 * 119.73061 * 179.72446 * 20 18 17 30 30 C 1.47422 * 125.65252 * 180.02562 * 9 7 2 31 31 H 0.97001 * 120.00218 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.87825 * 61.60817 * 10 9 7 33 33 H 1.09001 * 109.88209 * 300.44872 * 10 9 7 34 34 H 0.96700 * 114.00311 * 293.52656 * 13 11 10 35 35 H 1.08990 * 109.47191 * 304.99663 * 16 14 11 36 36 H 1.08999 * 109.46836 * 65.00272 * 16 14 11 37 37 H 0.97001 * 120.00169 * 359.97438 * 17 16 14 38 38 H 1.07996 * 119.52057 * 0.02562 * 21 20 18 39 39 H 1.07999 * 120.05928 * 180.02562 * 22 21 20 40 40 H 1.08007 * 120.02635 * 359.95932 * 24 23 22 41 41 H 1.08000 * 119.07464 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.66161 * 180.02562 * 27 26 25 43 43 H 1.08005 * 120.36326 * 359.97438 * 29 20 18 44 44 H 1.09002 * 110.36847 * 37.05704 * 30 9 7 45 45 H 1.09001 * 110.36336 * 274.74147 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1375 -2.5328 -0.0030 11 6 -0.4484 -4.0441 0.0226 12 1 -1.2996 -4.2546 0.6701 13 8 -0.6874 -4.5336 -1.2986 14 6 0.8513 -4.6565 0.6081 15 1 0.8553 -4.5973 1.6965 16 6 1.0368 -6.1009 0.1389 17 7 2.2052 -6.6839 0.8032 18 6 2.5633 -7.9568 0.5424 19 8 1.9172 -8.6208 -0.2442 20 6 3.7431 -8.5451 1.2126 21 6 4.4868 -7.7716 2.1212 22 6 5.5744 -8.2871 2.7512 23 6 5.9681 -9.6116 2.4970 24 6 7.0852 -10.1865 3.1255 25 7 7.4192 -11.4275 2.8607 26 6 6.7431 -12.1873 2.0106 27 6 5.6454 -11.7250 1.3496 28 6 5.2248 -10.4018 1.5815 29 6 4.1028 -9.8558 0.9448 30 6 1.9335 -3.7311 -0.0017 31 1 -0.4850 0.8400 0.0004 32 1 -0.5535 -2.0839 -0.9051 33 1 -0.5584 -2.0527 0.8804 34 1 -1.4886 -4.1811 -1.7097 35 1 0.1491 -6.6813 0.3898 36 1 1.1876 -6.1158 -0.9405 37 1 2.7211 -6.1538 1.4308 38 1 4.1885 -6.7532 2.3219 39 1 6.1349 -7.6801 3.4467 40 1 7.6689 -9.6073 3.8258 41 1 7.0718 -13.2014 1.8373 42 1 5.1085 -12.3609 0.6614 43 1 3.5265 -10.4491 0.2503 44 1 2.8323 -3.7408 0.6147 45 1 2.1676 -4.0414 -1.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958567437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = -0.591726 kcal Electronic energy + Delta-G solvation = -28293.209495 eV Core-core repulsion = 24276.271491 eV Total energy + Delta-G solvation = -4016.938004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25136 -39.82207 -38.38351 -37.23662 -35.06028 -34.66571 -33.38355 -32.38159 -31.62493 -30.00054 -29.65978 -27.81811 -25.98752 -24.88116 -24.15788 -23.40523 -22.53286 -21.13659 -20.29067 -19.89519 -18.48557 -18.01291 -17.38502 -17.02181 -16.60369 -16.22138 -15.63513 -15.31811 -15.29867 -14.87708 -14.57197 -14.20475 -14.12042 -14.01970 -13.94219 -13.75935 -13.39352 -13.18870 -12.87272 -12.68911 -12.61263 -12.32609 -11.90969 -11.52109 -11.43048 -11.26442 -10.84616 -10.70402 -10.63507 -10.53600 -10.27783 -10.11514 -9.98193 -9.85358 -9.79085 -9.49946 -9.23034 -8.98795 -8.70177 -8.48486 -6.91492 -5.78827 -3.12111 -0.15000 0.31599 1.47328 2.24330 3.06346 3.16163 3.35989 3.40583 3.41588 3.72704 4.01048 4.12536 4.29522 4.37003 4.42396 4.49922 4.62267 4.66246 4.77114 4.84011 5.05756 5.19251 5.26991 5.29053 5.32297 5.36178 5.49301 5.53949 5.54499 5.64414 5.84918 5.88243 5.89685 6.01189 6.04653 6.20561 6.31043 6.31932 6.34300 6.40245 6.55017 6.83502 7.33830 7.43296 7.44444 7.56389 7.69326 8.11315 8.16157 8.19671 9.13781 9.74454 10.39849 11.33139 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002189 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.682492 B =12786.714815 C =14188.580590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.564 6.564 14 C -0.110 4.110 15 H 0.089 0.911 16 C 0.140 3.860 17 N -0.718 5.718 18 C 0.552 3.448 19 O -0.536 6.536 20 C -0.108 4.108 21 C -0.094 4.094 22 C -0.089 4.089 23 C -0.099 4.099 24 C 0.144 3.856 25 N -0.485 5.485 26 C 0.071 3.929 27 C -0.144 4.144 28 C -0.034 4.034 29 C -0.045 4.045 30 C 0.145 3.855 31 H 0.253 0.747 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.376 0.624 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.400 0.600 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.036 0.964 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.070 -20.212 6.383 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.370 6.370 14 C -0.130 4.130 15 H 0.107 0.893 16 C 0.017 3.983 17 N -0.369 5.369 18 C 0.339 3.661 19 O -0.415 6.415 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.109 4.109 23 C -0.101 4.101 24 C -0.028 4.028 25 N -0.193 5.193 26 C -0.071 4.071 27 C -0.164 4.164 28 C -0.040 4.040 29 C -0.064 4.064 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.236 0.764 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.165 0.835 44 H 0.054 0.946 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.780 -21.242 6.262 23.823 hybrid contribution -0.630 1.998 -0.226 2.107 sum 8.150 -19.244 6.036 21.753 Atomic orbital electron populations 1.69913 1.04925 1.25255 1.57168 1.24799 0.95761 0.97743 1.02192 0.86171 0.78447 0.83041 0.77929 1.21135 1.21584 1.21141 1.19017 0.90431 0.82340 1.43834 0.90424 1.44363 1.01354 0.99943 1.87261 1.21857 0.85337 0.88342 1.01646 1.23128 0.95074 0.96266 0.83254 0.92490 1.86403 1.48917 1.71470 1.30197 1.22688 0.97272 0.93022 0.99999 0.89271 1.21235 0.86614 0.92290 0.98123 1.46064 1.31585 1.12937 1.46344 1.18197 0.84045 0.81965 0.81920 1.90782 1.54279 1.60952 1.35445 1.20109 0.96936 0.95070 0.99152 1.21045 0.94907 0.99992 0.95263 1.20906 0.96766 0.93677 0.99547 1.19173 0.97339 0.95433 0.98137 1.23276 0.92576 0.91028 0.95897 1.67396 1.30605 1.06276 1.15007 1.22207 0.92322 0.99721 0.92891 1.22008 0.98414 0.94905 1.01047 1.18148 0.95264 0.94272 0.96273 1.21439 0.94092 0.94056 0.96846 1.21586 0.93614 0.85784 0.97181 0.93651 0.93197 0.92925 0.77727 0.91497 0.90096 0.76445 0.84832 0.84128 0.81693 0.82812 0.84074 0.83537 0.94566 0.95655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.31 55.49 0.57 -25.82 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.19 10.28 -15.06 -0.15 -6.35 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.85 3.39 -170.09 -0.58 -15.43 16 10 C 0.15 3.52 5.14 -3.07 -0.02 3.50 16 11 C 0.08 1.46 4.09 -24.90 -0.10 1.36 16 12 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 13 O -0.56 -9.60 12.24 -35.23 -0.43 -10.03 16 14 C -0.11 -1.79 2.97 -88.48 -0.26 -2.05 16 15 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.09 4.60 -4.04 -0.02 2.07 16 17 N -0.72 -9.10 5.45 -61.24 -0.33 -9.43 16 18 C 0.55 7.55 7.77 -12.31 -0.10 7.45 16 19 O -0.54 -9.17 16.30 5.33 0.09 -9.08 16 20 C -0.11 -1.19 5.87 -104.95 -0.62 -1.81 16 21 C -0.09 -0.81 9.44 -39.55 -0.37 -1.18 16 22 C -0.09 -0.67 9.77 -39.59 -0.39 -1.06 16 23 C -0.10 -0.87 5.75 -106.78 -0.61 -1.48 16 24 C 0.14 1.16 11.04 -16.97 -0.19 0.98 16 25 N -0.49 -4.60 10.29 -13.15 -0.14 -4.74 16 26 C 0.07 0.58 11.07 -17.97 -0.20 0.38 16 27 C -0.14 -1.16 9.88 -39.35 -0.39 -1.55 16 28 C -0.03 -0.33 5.74 -106.83 -0.61 -0.94 16 29 C -0.05 -0.47 9.38 -38.78 -0.36 -0.84 16 30 C 0.14 2.86 6.64 -2.54 -0.02 2.84 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.05 1.28 7.43 -51.93 -0.39 0.89 16 33 H 0.05 1.33 7.38 -51.93 -0.38 0.94 16 34 H 0.38 5.03 9.12 45.56 0.42 5.44 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.40 7.55 -51.93 -0.39 1.00 16 37 H 0.40 4.14 6.45 -40.82 -0.26 3.88 16 38 H 0.13 0.91 6.34 -52.49 -0.33 0.58 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.15 1.49 7.62 -52.48 -0.40 1.09 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.54 7.91 -51.93 -0.41 0.13 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -34.60 374.52 -9.78 -44.39 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.08 Total: 6.89 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -4.50 Total: 0.98 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.47 Total: -55.42 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.34 Total: -19.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.60 -9.78 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958567437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.796 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds