Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47297 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47095 * 119.99979 * 3 2 1 7 7 C 1.38813 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00034 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64882 * 0.03719 * 9 7 2 11 11 C 1.54314 * 107.27289 * 181.02803 * 10 9 7 12 12 H 1.09004 * 110.87338 * 140.63007 * 11 10 9 13 13 O 1.42903 * 110.72054 * 263.82722 * 11 10 9 14 14 C 1.55152 * 102.94606 * 22.19374 * 11 10 9 15 15 H 1.09005 * 111.00538 * 82.57095 * 14 11 10 16 16 C 1.53004 * 111.00508 * 206.42537 * 14 11 10 17 17 N 1.46503 * 109.46705 * 184.99842 * 16 14 11 18 18 C 1.34781 * 119.99750 * 179.97438 * 17 16 14 19 19 O 1.21542 * 119.99793 * 0.02562 * 18 17 16 20 20 C 1.47884 * 119.99839 * 179.97438 * 18 17 16 21 21 C 1.40602 * 119.73392 * 0.02562 * 20 18 17 22 22 C 1.35850 * 120.95680 * 179.97438 * 21 20 18 23 23 C 1.40494 * 119.87877 * 359.97438 * 22 21 20 24 24 C 1.40482 * 121.84868 * 180.02562 * 23 22 21 25 25 N 1.31215 * 119.94167 * 179.97438 * 24 23 22 26 26 C 1.32554 * 122.80624 * 0.02562 * 25 24 23 27 27 C 1.36223 * 121.84294 * 359.97438 * 26 25 24 28 28 C 1.40760 * 118.67670 * 0.02562 * 27 26 25 29 29 C 1.38531 * 119.73061 * 179.72446 * 20 18 17 30 30 C 1.47422 * 125.65252 * 180.02562 * 9 7 2 31 31 H 0.97001 * 120.00218 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.87825 * 61.60817 * 10 9 7 33 33 H 1.09001 * 109.88209 * 300.44872 * 10 9 7 34 34 H 0.96700 * 114.00311 * 293.52656 * 13 11 10 35 35 H 1.08990 * 109.47191 * 304.99663 * 16 14 11 36 36 H 1.08999 * 109.46836 * 65.00272 * 16 14 11 37 37 H 0.97001 * 120.00169 * 359.97438 * 17 16 14 38 38 H 1.07996 * 119.52057 * 0.02562 * 21 20 18 39 39 H 1.07999 * 120.05928 * 180.02562 * 22 21 20 40 40 H 1.08007 * 120.02635 * 359.95932 * 24 23 22 41 41 H 1.08000 * 119.07464 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.66161 * 180.02562 * 27 26 25 43 43 H 1.08005 * 120.36326 * 359.97438 * 29 20 18 44 44 H 1.09002 * 110.36847 * 37.05704 * 30 9 7 45 45 H 1.09001 * 110.36336 * 274.74147 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1375 -2.5328 -0.0030 11 6 -0.4484 -4.0441 0.0226 12 1 -1.2996 -4.2546 0.6701 13 8 -0.6874 -4.5336 -1.2986 14 6 0.8513 -4.6565 0.6081 15 1 0.8553 -4.5973 1.6965 16 6 1.0368 -6.1009 0.1389 17 7 2.2052 -6.6839 0.8032 18 6 2.5633 -7.9568 0.5424 19 8 1.9172 -8.6208 -0.2442 20 6 3.7431 -8.5451 1.2126 21 6 4.4868 -7.7716 2.1212 22 6 5.5744 -8.2871 2.7512 23 6 5.9681 -9.6116 2.4970 24 6 7.0852 -10.1865 3.1255 25 7 7.4192 -11.4275 2.8607 26 6 6.7431 -12.1873 2.0106 27 6 5.6454 -11.7250 1.3496 28 6 5.2248 -10.4018 1.5815 29 6 4.1028 -9.8558 0.9448 30 6 1.9335 -3.7311 -0.0017 31 1 -0.4850 0.8400 0.0004 32 1 -0.5535 -2.0839 -0.9051 33 1 -0.5584 -2.0527 0.8804 34 1 -1.4886 -4.1811 -1.7097 35 1 0.1491 -6.6813 0.3898 36 1 1.1876 -6.1158 -0.9405 37 1 2.7211 -6.1538 1.4308 38 1 4.1885 -6.7532 2.3219 39 1 6.1349 -7.6801 3.4467 40 1 7.6689 -9.6073 3.8258 41 1 7.0718 -13.2014 1.8373 42 1 5.1085 -12.3609 0.6614 43 1 3.5265 -10.4491 0.2503 44 1 2.8323 -3.7408 0.6147 45 1 2.1676 -4.0414 -1.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958567437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = -25.743237 kcal Electronic energy + Delta-G solvation = -28294.300146 eV Core-core repulsion = 24276.271491 eV Total energy + Delta-G solvation = -4018.028655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.94312 -40.86220 -39.83304 -37.98750 -36.41776 -36.17773 -34.10252 -33.91742 -32.60969 -31.19530 -30.63010 -29.45532 -27.42795 -26.18075 -24.79266 -24.70473 -23.23146 -22.36251 -21.82988 -21.23313 -19.45758 -19.05925 -18.70065 -18.12684 -17.65332 -17.18966 -16.79584 -16.64832 -16.42066 -15.91326 -15.78088 -15.45047 -15.25802 -15.15211 -14.82261 -14.64253 -14.60745 -14.37853 -14.26216 -13.84393 -13.58413 -13.42403 -13.13108 -13.10838 -12.98094 -12.63609 -12.39750 -12.11619 -12.08974 -11.91035 -11.78126 -11.60609 -11.25944 -11.13392 -10.78465 -10.71506 -10.51633 -10.32547 -10.03178 -9.11607 -8.90759 -7.85585 -5.20683 -0.83310 -0.34503 0.81168 1.46251 1.46841 1.49589 1.55656 2.03020 2.31541 2.49296 3.05896 3.27048 3.35948 3.48285 3.51813 3.53096 3.57021 3.75220 3.82629 3.90913 3.94001 3.98066 4.02803 4.08553 4.29590 4.43028 4.56488 4.60478 4.63941 4.67764 4.75622 4.84245 4.90930 4.93337 4.99507 5.03929 5.20268 5.25965 5.27844 5.38763 5.42555 5.53227 5.61644 5.70584 5.71542 6.17953 6.44170 6.92884 6.96445 7.09191 7.09868 7.76384 8.40632 9.24430 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002189 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.682492 B =12786.714815 C =14188.580590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.624 5.624 10 C 0.160 3.840 11 C 0.094 3.906 12 H 0.088 0.912 13 O -0.572 6.572 14 C -0.092 4.092 15 H 0.112 0.888 16 C 0.156 3.844 17 N -0.708 5.708 18 C 0.552 3.448 19 O -0.578 6.578 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.076 4.076 23 C -0.110 4.110 24 C 0.145 3.855 25 N -0.508 5.508 26 C 0.066 3.934 27 C -0.151 4.151 28 C -0.050 4.050 29 C -0.055 4.055 30 C 0.142 3.858 31 H 0.247 0.753 32 H 0.012 0.988 33 H 0.024 0.976 34 H 0.391 0.609 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.413 0.587 38 H 0.153 0.847 39 H 0.177 0.823 40 H 0.197 0.803 41 H 0.176 0.824 42 H 0.158 0.842 43 H 0.139 0.861 44 H 0.055 0.945 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.847 -20.922 8.106 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.034 3.966 11 C 0.034 3.966 12 H 0.106 0.894 13 O -0.379 6.379 14 C -0.112 4.112 15 H 0.130 0.870 16 C 0.032 3.968 17 N -0.360 5.360 18 C 0.341 3.659 19 O -0.459 6.459 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.095 4.095 23 C -0.112 4.112 24 C -0.026 4.026 25 N -0.216 5.216 26 C -0.077 4.077 27 C -0.170 4.170 28 C -0.055 4.055 29 C -0.074 4.074 30 C 0.017 3.983 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.240 0.760 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.252 0.748 38 H 0.171 0.829 39 H 0.194 0.806 40 H 0.213 0.787 41 H 0.193 0.807 42 H 0.176 0.824 43 H 0.157 0.843 44 H 0.073 0.927 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 10.583 -21.969 7.996 25.663 hybrid contribution -1.118 2.153 -0.791 2.552 sum 9.465 -19.816 7.205 23.112 Atomic orbital electron populations 1.70132 1.06210 1.25351 1.58369 1.25627 0.96656 1.00970 1.02686 0.85161 0.77146 0.78844 0.78231 1.20731 1.22215 1.19895 1.19423 0.91055 0.83638 1.42896 0.89886 1.44688 1.02314 1.01074 1.86993 1.21677 0.84526 0.91835 0.98517 1.22985 0.96886 0.92476 0.84235 0.89448 1.86385 1.50198 1.71193 1.30169 1.22578 0.94925 0.92734 1.00913 0.87029 1.20902 0.87666 0.91472 0.96785 1.45901 1.31051 1.12855 1.46204 1.18608 0.84311 0.81752 0.81268 1.90757 1.55828 1.61948 1.37382 1.19993 0.96599 0.95542 1.00326 1.21226 0.95142 1.00680 0.94961 1.21284 0.96024 0.93246 0.98953 1.19450 0.97584 0.96105 0.98039 1.23790 0.92283 0.90817 0.95735 1.67456 1.31321 1.07087 1.15755 1.22599 0.92080 1.00629 0.92360 1.22228 0.98660 0.94704 1.01451 1.18345 0.95241 0.95199 0.96751 1.21450 0.94657 0.94128 0.97198 1.21706 0.95321 0.84320 0.96981 0.94401 0.96937 0.95754 0.75988 0.91030 0.92552 0.74848 0.82906 0.80607 0.78661 0.80693 0.82426 0.84298 0.92709 0.97194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.66 10.31 21.65 0.22 -55.44 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 3 Si 0.98 44.69 29.55 68.60 2.03 46.72 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.24 -13.13 10.28 84.03 0.86 -12.27 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -30.88 3.39 -692.03 -2.35 -33.23 16 10 C 0.16 7.46 5.14 86.72 0.45 7.91 16 11 C 0.09 3.22 4.09 31.78 0.13 3.35 16 12 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 13 O -0.57 -19.06 12.24 -148.98 -1.82 -20.88 16 14 C -0.09 -2.82 2.97 -9.41 -0.03 -2.85 16 15 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 16 C 0.16 4.43 4.60 86.38 0.40 4.83 16 17 N -0.71 -16.83 5.45 -465.94 -2.54 -19.37 16 18 C 0.55 14.78 7.77 86.80 0.67 15.45 16 19 O -0.58 -19.99 16.30 -3.85 -0.06 -20.06 16 20 C -0.12 -2.54 5.87 -20.08 -0.12 -2.66 16 21 C -0.10 -1.51 9.44 22.29 0.21 -1.30 16 22 C -0.08 -0.90 9.77 22.27 0.22 -0.69 16 23 C -0.11 -1.69 5.75 -21.26 -0.12 -1.81 16 24 C 0.15 1.97 11.04 85.33 0.94 2.91 16 25 N -0.51 -8.66 10.29 -195.50 -2.01 -10.67 16 26 C 0.07 0.97 11.07 84.11 0.93 1.90 16 27 C -0.15 -2.28 9.88 22.42 0.22 -2.06 16 28 C -0.05 -0.92 5.74 -21.29 -0.12 -1.04 16 29 C -0.06 -1.15 9.38 22.79 0.21 -0.93 16 30 C 0.14 5.46 6.64 86.85 0.58 6.04 16 31 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 32 H 0.01 0.67 7.43 -2.39 -0.02 0.65 16 33 H 0.02 1.26 7.38 -2.39 -0.02 1.24 16 34 H 0.39 10.26 9.12 -74.06 -0.68 9.59 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 1.92 7.55 -2.39 -0.02 1.90 16 37 H 0.41 7.50 6.45 -92.71 -0.60 6.91 16 38 H 0.15 1.58 6.34 -2.91 -0.02 1.56 16 39 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 43 H 0.14 2.96 7.62 -2.91 -0.02 2.94 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.01 0.43 7.91 -2.39 -0.02 0.41 16 Total: -1.00 -77.07 374.52 -0.87 -77.94 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.23 Total: 21.42 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 5.90 Total: 13.56 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -6.68 Total: -118.70 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.89 Total: -40.94 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -77.07 -0.87 -77.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958567437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.197 kcal (2) G-P(sol) polarization free energy of solvation -77.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds