Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99729 * 2 1 4 4 H 1.48500 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47319 * 299.99868 * 3 2 1 6 6 H 1.48496 * 109.47524 * 60.00152 * 3 2 1 7 7 C 1.38808 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99787 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00695 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64315 * 359.96618 * 9 7 2 11 11 C 1.54912 * 104.82885 * 204.16030 * 10 9 7 12 12 H 1.09002 * 111.00330 * 204.91814 * 11 10 9 13 13 O 1.42898 * 111.00452 * 81.06090 * 11 10 9 14 14 C 1.55158 * 101.58200 * 322.98918 * 11 10 9 15 15 H 1.09004 * 110.86775 * 277.06806 * 14 11 10 16 16 C 1.52994 * 110.72369 * 153.86970 * 14 11 10 17 17 N 1.46493 * 109.47331 * 180.02562 * 16 14 11 18 18 C 1.34782 * 120.00237 * 179.97438 * 17 16 14 19 19 O 1.21566 * 119.99726 * 359.97438 * 18 17 16 20 20 C 1.47769 * 120.00389 * 179.97438 * 18 17 16 21 21 C 1.40656 * 119.69704 * 359.97438 * 20 18 17 22 22 C 1.35846 * 120.87560 * 180.02562 * 21 20 18 23 23 C 1.40398 * 119.84963 * 0.02562 * 22 21 20 24 24 C 1.40635 * 121.98786 * 179.97438 * 23 22 21 25 25 C 1.36221 * 118.73252 * 180.30011 * 24 23 22 26 26 N 1.32601 * 121.90126 * 359.42297 * 25 24 23 27 27 C 1.31240 * 122.73976 * 0.59327 * 26 25 24 28 28 C 1.40551 * 119.88083 * 359.70652 * 27 26 25 29 29 C 1.38563 * 119.70172 * 180.02562 * 20 18 17 30 30 C 1.47021 * 125.65379 * 179.97438 * 9 7 2 31 31 H 0.97002 * 120.00044 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.36796 * 322.99570 * 10 9 7 33 33 H 1.08996 * 110.36872 * 85.21047 * 10 9 7 34 34 H 0.96696 * 113.99840 * 67.80988 * 13 11 10 35 35 H 1.09001 * 109.47250 * 60.01979 * 16 14 11 36 36 H 1.09009 * 109.46970 * 300.02277 * 16 14 11 37 37 H 0.97005 * 120.00259 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.56275 * 0.02562 * 21 20 18 39 39 H 1.08000 * 120.07689 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.63083 * 0.02562 * 24 23 22 41 41 H 1.08000 * 119.04819 * 179.71693 * 25 24 23 42 42 H 1.07999 * 120.05975 * 179.68553 * 27 26 25 43 43 H 1.07998 * 120.34287 * 359.95288 * 29 20 18 44 44 H 1.08999 * 109.88096 * 59.49013 * 30 9 7 45 45 H 1.09003 * 110.00724 * 298.40073 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1415 -2.5332 0.0030 11 6 -0.4011 -3.9317 0.6167 12 1 -1.3587 -4.3325 0.2844 13 8 -0.3347 -3.8853 2.0433 14 6 0.7784 -4.7524 0.0315 15 1 0.5470 -5.1015 -0.9749 16 6 1.1240 -5.9304 0.9446 17 7 2.2393 -6.6848 0.3676 18 6 2.7181 -7.7723 1.0039 19 8 2.2247 -8.1267 2.0569 20 6 3.8427 -8.5337 0.4215 21 6 4.4084 -8.1182 -0.7974 22 6 5.4425 -8.8007 -1.3545 23 6 5.9578 -9.9368 -0.7103 24 6 7.0265 -10.6769 -1.2468 25 6 7.4700 -11.7721 -0.5690 26 7 6.9308 -12.1496 0.5821 27 6 5.9320 -11.5084 1.1422 28 6 5.3959 -10.3674 0.5207 29 6 4.3297 -9.6509 1.0807 30 6 1.9318 -3.7275 0.0017 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5988 -1.7582 0.6181 33 1 -0.5284 -2.4860 -1.0149 34 1 -1.0516 -3.3831 2.4543 35 1 0.2557 -6.5822 1.0412 36 1 1.4087 -5.5563 1.9281 37 1 2.6332 -6.4018 -0.4725 38 1 4.0154 -7.2452 -1.2971 39 1 5.8668 -8.4705 -2.2911 40 1 7.4840 -10.3850 -2.1806 41 1 8.2874 -12.3469 -0.9787 42 1 5.5225 -11.8570 2.0787 43 1 3.8921 -9.9662 2.0164 44 1 2.5594 -3.8503 0.8844 45 1 2.5287 -3.8668 -0.8996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958569007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = 1.076620 kcal Electronic energy + Delta-G solvation = -28371.941611 eV Core-core repulsion = 24355.075952 eV Total energy + Delta-G solvation = -4016.865659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24685 -39.80149 -38.34257 -37.23138 -35.00476 -34.57627 -33.35530 -32.41118 -31.59291 -30.17619 -29.57279 -27.78436 -25.89177 -24.81869 -24.29652 -23.37573 -22.52782 -21.17921 -20.29366 -19.74862 -18.42026 -18.10033 -17.36422 -17.04469 -16.51806 -15.95805 -15.65794 -15.37949 -15.28338 -14.88890 -14.58812 -14.34610 -14.22329 -14.02292 -13.94315 -13.80109 -13.50102 -13.25872 -12.74998 -12.46291 -12.31224 -12.22912 -11.95987 -11.64675 -11.41358 -11.29068 -10.85095 -10.69164 -10.59090 -10.40547 -10.32972 -10.07481 -9.96287 -9.87720 -9.76584 -9.52562 -9.14071 -8.98842 -8.72078 -8.46893 -6.88305 -5.72761 -3.12867 -0.14190 0.33636 1.43775 2.27269 3.09630 3.17635 3.35901 3.41766 3.43971 3.73204 4.00433 4.13290 4.27852 4.35814 4.43140 4.53057 4.63538 4.70358 4.75668 4.82893 5.09501 5.19319 5.26800 5.29198 5.35468 5.38833 5.47607 5.51093 5.56550 5.59657 5.85944 5.87565 5.94132 6.01844 6.08290 6.20419 6.29383 6.32481 6.38774 6.43716 6.58912 6.80857 7.24458 7.46926 7.54201 7.55990 7.71943 8.14939 8.20355 8.34054 9.14889 9.76272 10.39917 11.32205 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.002178 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.840938 B =12850.768501 C =13932.368185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.126 3.874 11 C 0.083 3.917 12 H 0.055 0.945 13 O -0.557 6.557 14 C -0.107 4.107 15 H 0.086 0.914 16 C 0.139 3.861 17 N -0.719 5.719 18 C 0.554 3.446 19 O -0.537 6.537 20 C -0.132 4.132 21 C -0.070 4.070 22 C -0.117 4.117 23 C -0.009 4.009 24 C -0.160 4.160 25 C 0.082 3.918 26 N -0.493 5.493 27 C 0.159 3.841 28 C -0.124 4.124 29 C -0.017 4.017 30 C 0.144 3.856 31 H 0.251 0.749 32 H 0.112 0.888 33 H 0.019 0.981 34 H 0.375 0.625 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.399 0.601 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.149 0.851 44 H 0.028 0.972 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.028 -20.948 -3.434 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.000 4.000 11 C 0.022 3.978 12 H 0.073 0.927 13 O -0.363 6.363 14 C -0.126 4.126 15 H 0.104 0.896 16 C 0.017 3.983 17 N -0.370 5.370 18 C 0.341 3.659 19 O -0.416 6.416 20 C -0.135 4.135 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.014 4.014 24 C -0.179 4.179 25 C -0.060 4.060 26 N -0.201 5.201 27 C -0.013 4.013 28 C -0.126 4.126 29 C -0.038 4.038 30 C 0.018 3.982 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.037 0.963 34 H 0.222 0.778 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.234 0.766 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.171 0.829 42 H 0.185 0.815 43 H 0.167 0.833 44 H 0.046 0.954 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.622 -22.058 -2.502 23.815 hybrid contribution -0.176 2.228 -1.031 2.461 sum 8.446 -19.831 -3.533 21.842 Atomic orbital electron populations 1.69758 1.04916 1.24699 1.58068 1.24770 0.95767 0.97757 1.02486 0.85974 0.78656 0.83485 0.77247 1.20536 1.21780 1.21701 1.19129 0.90545 0.82397 1.42573 0.90430 1.44346 1.01542 0.99742 1.86682 1.22594 0.85713 0.93012 0.98637 1.23186 0.95097 0.98081 0.81446 0.92731 1.86389 1.54364 1.76645 1.18879 1.22515 0.97505 0.94370 0.98247 0.89622 1.21290 0.87857 0.91364 0.97832 1.46049 1.36328 1.28383 1.26282 1.18151 0.82719 0.80620 0.84451 1.90787 1.59974 1.68489 1.22311 1.20034 0.98755 0.97978 0.96742 1.21104 0.95046 0.98907 0.93901 1.20878 0.97244 0.94766 1.00584 1.18309 0.94710 0.94921 0.93477 1.21947 0.97366 0.96868 1.01741 1.22269 0.98451 0.94589 0.90733 1.67491 1.10076 1.31455 1.11037 1.23342 0.90450 0.89351 0.98161 1.19017 0.98662 0.98544 0.96377 1.21464 0.92084 0.91647 0.98628 1.21308 0.93369 0.85714 0.97799 0.93774 0.87036 0.96270 0.77761 0.91576 0.89855 0.76564 0.84893 0.84406 0.84201 0.82862 0.81537 0.83288 0.95360 0.96413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.23 10.09 55.49 0.56 -25.67 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -5.98 10.27 -15.06 -0.15 -6.14 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -14.84 3.39 -170.07 -0.58 -15.42 16 10 C 0.13 2.88 5.62 -2.53 -0.01 2.87 16 11 C 0.08 1.48 4.17 -24.58 -0.10 1.37 16 12 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 13 O -0.56 -10.08 12.22 -35.23 -0.43 -10.51 16 14 C -0.11 -1.74 2.94 -88.79 -0.26 -2.01 16 15 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 16 C 0.14 2.12 4.59 -4.05 -0.02 2.11 16 17 N -0.72 -9.31 5.35 -61.28 -0.33 -9.63 16 18 C 0.55 7.66 7.76 -12.36 -0.10 7.56 16 19 O -0.54 -9.25 16.30 5.31 0.09 -9.16 16 20 C -0.13 -1.46 5.87 -104.97 -0.62 -2.08 16 21 C -0.07 -0.62 9.44 -39.53 -0.37 -1.00 16 22 C -0.12 -0.94 9.77 -39.63 -0.39 -1.32 16 23 C -0.01 -0.08 5.75 -106.74 -0.61 -0.69 16 24 C -0.16 -1.18 9.87 -39.40 -0.39 -1.57 16 25 C 0.08 0.65 11.07 -17.95 -0.20 0.46 16 26 N -0.49 -4.79 10.30 -13.11 -0.14 -4.92 16 27 C 0.16 1.40 11.05 -16.93 -0.19 1.21 16 28 C -0.12 -1.19 5.74 -106.87 -0.61 -1.80 16 29 C -0.02 -0.18 9.37 -38.75 -0.36 -0.54 16 30 C 0.14 2.88 6.52 -3.07 -0.02 2.86 16 31 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.38 5.53 9.12 45.56 0.42 5.95 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.51 7.44 -51.92 -0.39 1.12 16 37 H 0.40 4.23 6.30 -40.82 -0.26 3.97 16 38 H 0.13 0.94 6.34 -52.49 -0.33 0.60 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.15 1.43 7.61 -52.49 -0.40 1.03 16 44 H 0.03 0.60 7.77 -51.93 -0.40 0.20 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -34.53 373.35 -9.75 -44.28 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.02 Total: 7.78 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -4.50 Total: 0.84 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.48 Total: -55.64 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.34 Total: -19.67 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.53 -9.75 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958569007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.353 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds