Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99729 * 2 1 4 4 H 1.48500 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47319 * 299.99868 * 3 2 1 6 6 H 1.48496 * 109.47524 * 60.00152 * 3 2 1 7 7 C 1.38808 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99787 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00695 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64315 * 359.96618 * 9 7 2 11 11 C 1.54912 * 104.82885 * 204.16030 * 10 9 7 12 12 H 1.09002 * 111.00330 * 204.91814 * 11 10 9 13 13 O 1.42898 * 111.00452 * 81.06090 * 11 10 9 14 14 C 1.55158 * 101.58200 * 322.98918 * 11 10 9 15 15 H 1.09004 * 110.86775 * 277.06806 * 14 11 10 16 16 C 1.52994 * 110.72369 * 153.86970 * 14 11 10 17 17 N 1.46493 * 109.47331 * 180.02562 * 16 14 11 18 18 C 1.34782 * 120.00237 * 179.97438 * 17 16 14 19 19 O 1.21566 * 119.99726 * 359.97438 * 18 17 16 20 20 C 1.47769 * 120.00389 * 179.97438 * 18 17 16 21 21 C 1.40656 * 119.69704 * 359.97438 * 20 18 17 22 22 C 1.35846 * 120.87560 * 180.02562 * 21 20 18 23 23 C 1.40398 * 119.84963 * 0.02562 * 22 21 20 24 24 C 1.40635 * 121.98786 * 179.97438 * 23 22 21 25 25 C 1.36221 * 118.73252 * 180.30011 * 24 23 22 26 26 N 1.32601 * 121.90126 * 359.42297 * 25 24 23 27 27 C 1.31240 * 122.73976 * 0.59327 * 26 25 24 28 28 C 1.40551 * 119.88083 * 359.70652 * 27 26 25 29 29 C 1.38563 * 119.70172 * 180.02562 * 20 18 17 30 30 C 1.47021 * 125.65379 * 179.97438 * 9 7 2 31 31 H 0.97002 * 120.00044 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.36796 * 322.99570 * 10 9 7 33 33 H 1.08996 * 110.36872 * 85.21047 * 10 9 7 34 34 H 0.96696 * 113.99840 * 67.80988 * 13 11 10 35 35 H 1.09001 * 109.47250 * 60.01979 * 16 14 11 36 36 H 1.09009 * 109.46970 * 300.02277 * 16 14 11 37 37 H 0.97005 * 120.00259 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.56275 * 0.02562 * 21 20 18 39 39 H 1.08000 * 120.07689 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.63083 * 0.02562 * 24 23 22 41 41 H 1.08000 * 119.04819 * 179.71693 * 25 24 23 42 42 H 1.07999 * 120.05975 * 179.68553 * 27 26 25 43 43 H 1.07998 * 120.34287 * 359.95288 * 29 20 18 44 44 H 1.08999 * 109.88096 * 59.49013 * 30 9 7 45 45 H 1.09003 * 110.00724 * 298.40073 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1415 -2.5332 0.0030 11 6 -0.4011 -3.9317 0.6167 12 1 -1.3587 -4.3325 0.2844 13 8 -0.3347 -3.8853 2.0433 14 6 0.7784 -4.7524 0.0315 15 1 0.5470 -5.1015 -0.9749 16 6 1.1240 -5.9304 0.9446 17 7 2.2393 -6.6848 0.3676 18 6 2.7181 -7.7723 1.0039 19 8 2.2247 -8.1267 2.0569 20 6 3.8427 -8.5337 0.4215 21 6 4.4084 -8.1182 -0.7974 22 6 5.4425 -8.8007 -1.3545 23 6 5.9578 -9.9368 -0.7103 24 6 7.0265 -10.6769 -1.2468 25 6 7.4700 -11.7721 -0.5690 26 7 6.9308 -12.1496 0.5821 27 6 5.9320 -11.5084 1.1422 28 6 5.3959 -10.3674 0.5207 29 6 4.3297 -9.6509 1.0807 30 6 1.9318 -3.7275 0.0017 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5988 -1.7582 0.6181 33 1 -0.5284 -2.4860 -1.0149 34 1 -1.0516 -3.3831 2.4543 35 1 0.2557 -6.5822 1.0412 36 1 1.4087 -5.5563 1.9281 37 1 2.6332 -6.4018 -0.4725 38 1 4.0154 -7.2452 -1.2971 39 1 5.8668 -8.4705 -2.2911 40 1 7.4840 -10.3850 -2.1806 41 1 8.2874 -12.3469 -0.9787 42 1 5.5225 -11.8570 2.0787 43 1 3.8921 -9.9662 2.0164 44 1 2.5594 -3.8503 0.8844 45 1 2.5287 -3.8668 -0.8996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958569007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = -23.882191 kcal Electronic energy + Delta-G solvation = -28373.023906 eV Core-core repulsion = 24355.075952 eV Total energy + Delta-G solvation = -4017.947954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.94590 -40.85519 -39.79366 -37.99531 -36.33920 -36.16648 -34.04014 -33.99847 -32.55189 -31.27352 -30.69451 -29.40240 -27.39122 -26.06753 -24.96513 -24.65313 -23.23349 -22.42465 -21.76525 -21.13479 -19.43766 -19.06921 -18.75762 -18.06258 -17.78065 -16.89747 -16.76783 -16.67330 -16.43756 -16.00139 -15.84926 -15.59350 -15.25851 -15.13959 -14.86700 -14.63631 -14.49517 -14.42420 -14.23643 -13.93898 -13.66940 -13.17733 -13.12322 -12.97382 -12.86959 -12.66086 -12.33050 -12.29222 -12.01905 -11.86535 -11.81492 -11.66220 -11.24483 -11.11174 -10.80834 -10.66087 -10.51409 -10.30080 -10.07569 -9.11763 -8.85138 -7.78850 -5.20842 -0.82204 -0.34155 0.76616 1.46128 1.47155 1.49005 1.56854 2.05417 2.31518 2.48776 3.04953 3.28292 3.35414 3.44792 3.50677 3.60528 3.61204 3.66679 3.85530 3.90752 3.95998 4.00724 4.01672 4.05749 4.30329 4.44451 4.60285 4.64298 4.65040 4.67510 4.78503 4.82882 4.87369 4.93425 4.95828 5.02149 5.17908 5.29389 5.31740 5.36948 5.40928 5.51868 5.60589 5.70577 5.78405 6.29497 6.45532 6.94612 6.96811 7.10909 7.12233 7.78491 8.40947 9.23444 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.002178 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.840938 B =12850.768501 C =13932.368185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.621 5.621 10 C 0.126 3.874 11 C 0.092 3.908 12 H 0.090 0.910 13 O -0.570 6.570 14 C -0.091 4.091 15 H 0.116 0.884 16 C 0.154 3.846 17 N -0.710 5.710 18 C 0.554 3.446 19 O -0.579 6.579 20 C -0.147 4.147 21 C -0.076 4.076 22 C -0.108 4.108 23 C -0.023 4.023 24 C -0.154 4.154 25 C 0.072 3.928 26 N -0.514 5.514 27 C 0.150 3.850 28 C -0.136 4.136 29 C -0.021 4.021 30 C 0.141 3.859 31 H 0.247 0.753 32 H 0.079 0.921 33 H 0.003 0.997 34 H 0.388 0.612 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.412 0.588 38 H 0.152 0.848 39 H 0.169 0.831 40 H 0.172 0.828 41 H 0.179 0.821 42 H 0.184 0.816 43 H 0.146 0.854 44 H 0.013 0.987 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.443 -22.137 -5.224 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.347 5.347 10 C 0.001 3.999 11 C 0.032 3.968 12 H 0.108 0.892 13 O -0.377 6.377 14 C -0.110 4.110 15 H 0.134 0.866 16 C 0.030 3.970 17 N -0.362 5.362 18 C 0.342 3.658 19 O -0.460 6.460 20 C -0.150 4.150 21 C -0.096 4.096 22 C -0.126 4.126 23 C -0.028 4.028 24 C -0.173 4.173 25 C -0.071 4.071 26 N -0.223 5.223 27 C -0.021 4.021 28 C -0.138 4.138 29 C -0.042 4.042 30 C 0.016 3.984 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.021 0.979 34 H 0.237 0.763 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.250 0.750 38 H 0.169 0.831 39 H 0.187 0.813 40 H 0.189 0.811 41 H 0.196 0.804 42 H 0.201 0.799 43 H 0.164 0.836 44 H 0.031 0.969 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.053 -23.265 -4.312 25.708 hybrid contribution -0.534 2.531 -0.476 2.630 sum 9.519 -20.733 -4.788 23.311 Atomic orbital electron populations 1.69999 1.05990 1.24874 1.58921 1.25555 0.96690 1.00736 1.02922 0.85018 0.78059 0.79601 0.76708 1.19379 1.21769 1.22065 1.19450 0.90915 0.83874 1.42065 0.90495 1.44652 1.02611 1.00774 1.86621 1.22450 0.84740 0.95299 0.97423 1.23107 0.97364 0.95219 0.81124 0.89240 1.86378 1.55476 1.76794 1.19078 1.22465 0.95246 0.93409 0.99906 0.86559 1.20953 0.88730 0.91127 0.96143 1.45890 1.35752 1.27908 1.26639 1.18573 0.82898 0.80465 0.83831 1.90761 1.61464 1.69619 1.24177 1.19900 0.98616 0.98380 0.98101 1.21270 0.95432 0.99734 0.93155 1.21214 0.96342 0.93774 1.01248 1.18668 0.95251 0.95553 0.93376 1.22275 0.96452 0.96034 1.02552 1.22765 0.98921 0.95118 0.90289 1.67529 1.10530 1.32099 1.12100 1.23635 0.90410 0.89226 0.98838 1.19115 0.98708 0.98899 0.97098 1.21503 0.92398 0.91705 0.98637 1.21448 0.94610 0.84641 0.97687 0.94353 0.90356 0.97922 0.76301 0.90887 0.92960 0.74990 0.83062 0.81324 0.81082 0.80434 0.79947 0.83638 0.96915 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.84 10.09 21.65 0.22 -54.62 16 2 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 3 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 7 C -0.23 -12.93 10.27 84.03 0.86 -12.06 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.62 -30.93 3.39 -691.98 -2.35 -33.28 16 10 C 0.13 5.82 5.62 86.86 0.49 6.31 16 11 C 0.09 3.18 4.17 31.99 0.13 3.32 16 12 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 13 O -0.57 -20.33 12.22 -148.98 -1.82 -22.15 16 14 C -0.09 -2.79 2.94 -9.61 -0.03 -2.82 16 15 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 16 C 0.15 4.51 4.59 86.38 0.40 4.91 16 17 N -0.71 -17.40 5.35 -466.05 -2.49 -19.89 16 18 C 0.55 15.10 7.76 86.76 0.67 15.77 16 19 O -0.58 -20.26 16.30 -3.92 -0.06 -20.32 16 20 C -0.15 -3.14 5.87 -20.09 -0.12 -3.25 16 21 C -0.08 -1.19 9.44 22.30 0.21 -0.98 16 22 C -0.11 -1.41 9.77 22.24 0.22 -1.19 16 23 C -0.02 -0.37 5.75 -21.24 -0.12 -0.49 16 24 C -0.15 -1.82 9.87 22.39 0.22 -1.60 16 25 C 0.07 0.98 11.07 84.11 0.93 1.91 16 26 N -0.51 -9.36 10.30 -195.40 -2.01 -11.37 16 27 C 0.15 2.55 11.05 85.35 0.94 3.49 16 28 C -0.14 -2.49 5.74 -21.32 -0.12 -2.61 16 29 C -0.02 -0.44 9.37 22.81 0.21 -0.22 16 30 C 0.14 5.50 6.52 86.73 0.57 6.06 16 31 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 32 H 0.08 4.16 5.87 -2.39 -0.01 4.14 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.39 11.34 9.12 -74.06 -0.68 10.66 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 1.89 7.44 -2.38 -0.02 1.87 16 37 H 0.41 7.78 6.30 -92.70 -0.58 7.20 16 38 H 0.15 1.68 6.34 -2.91 -0.02 1.66 16 39 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 41 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 43 H 0.15 2.92 7.61 -2.91 -0.02 2.90 16 44 H 0.01 0.54 7.77 -2.39 -0.02 0.52 16 45 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -76.61 373.35 -0.77 -77.39 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.21 Total: 23.76 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.93 Total: 13.29 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -6.64 Total: -119.16 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.88 Total: -42.47 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.61 -0.77 -77.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958569007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.503 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds