Wall clock time and date at job start Sat Apr 11 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86790 * 120.00215 * 2 1 4 4 H 1.48503 * 109.47429 * 239.99547 * 3 2 1 5 5 H 1.48505 * 109.47382 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47291 * 119.99701 * 3 2 1 7 7 C 1.38819 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99418 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64787 * 359.95965 * 9 7 2 11 11 C 1.54333 * 107.26818 * 181.09432 * 10 9 7 12 12 H 1.09007 * 110.71756 * 140.55751 * 11 10 9 13 13 O 1.42903 * 110.71910 * 263.82667 * 11 10 9 14 14 C 1.55150 * 102.94477 * 22.19343 * 11 10 9 15 15 H 1.09002 * 111.04114 * 82.58415 * 14 11 10 16 16 C 1.52995 * 111.00731 * 206.42407 * 14 11 10 17 17 N 1.46497 * 109.47631 * 178.64627 * 16 14 11 18 18 C 1.34779 * 120.00204 * 180.02562 * 17 16 14 19 19 O 1.21500 * 119.99734 * 359.97438 * 18 17 16 20 20 C 1.48277 * 119.99864 * 180.02562 * 18 17 16 21 21 C 1.40275 * 119.23655 * 179.97438 * 20 18 17 22 22 C 1.36507 * 119.81287 * 180.02562 * 21 20 18 23 23 C 1.40750 * 118.24146 * 359.97438 * 22 21 20 24 24 C 1.40422 * 121.27006 * 180.25401 * 23 22 21 25 25 C 1.36132 * 119.64932 * 180.24467 * 24 23 22 26 26 C 1.39439 * 120.91134 * 359.49181 * 25 24 23 27 27 C 1.35994 * 121.08789 * 0.26347 * 26 25 24 28 28 C 1.40823 * 119.73480 * 359.97438 * 27 26 25 29 29 N 1.31877 * 119.24084 * 359.97346 * 20 18 17 30 30 C 1.47425 * 125.64832 * 179.97438 * 9 7 2 31 31 H 0.97005 * 119.99934 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.88271 * 300.50365 * 10 9 7 33 33 H 1.08990 * 109.88619 * 61.52312 * 10 9 7 34 34 H 0.96705 * 113.99701 * 293.52424 * 13 11 10 35 35 H 1.09010 * 109.46920 * 58.64333 * 16 14 11 36 36 H 1.09001 * 109.47097 * 298.64988 * 16 14 11 37 37 H 0.97000 * 119.99823 * 0.02562 * 17 16 14 38 38 H 1.08005 * 120.09381 * 359.97270 * 21 20 18 39 39 H 1.08001 * 120.87691 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.17742 * 359.97438 * 24 23 22 41 41 H 1.08002 * 119.54710 * 179.77992 * 25 24 23 42 42 H 1.08005 * 119.45640 * 180.27850 * 26 25 24 43 43 H 1.07995 * 120.13692 * 180.02562 * 27 26 25 44 44 H 1.09009 * 110.36492 * 36.99705 * 30 9 7 45 45 H 1.08997 * 110.46287 * 274.72330 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0008 11 6 -0.4486 -4.0441 0.0289 12 1 -1.2986 -4.2510 0.6792 13 8 -0.6890 -4.5354 -1.2914 14 6 0.8518 -4.6557 0.6138 15 1 0.8574 -4.5955 1.7022 16 6 1.0368 -6.1007 0.1465 17 7 2.2880 -6.6338 0.6909 18 6 2.6610 -7.8979 0.4094 19 8 1.9593 -8.5956 -0.2956 20 6 3.9272 -8.4376 0.9609 21 6 4.2997 -9.7556 0.6581 22 6 5.4627 -10.2645 1.1600 23 6 6.2562 -9.4347 1.9742 24 6 7.4670 -9.8913 2.5195 25 6 8.2061 -9.0622 3.3067 26 6 7.7829 -7.7603 3.5716 27 6 6.6186 -7.2819 3.0568 28 6 5.8230 -8.1099 2.2416 29 7 4.6772 -7.6673 1.7248 30 6 1.9333 -3.7312 0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5575 -2.0515 0.8842 33 1 -0.5548 -2.0827 -0.8999 34 1 -1.4907 -4.1834 -1.7020 35 1 1.0734 -6.1285 -0.9426 36 1 0.2009 -6.7059 0.4974 37 1 2.8481 -6.0769 1.2540 38 1 3.6677 -10.3664 0.0303 39 1 5.7663 -11.2768 0.9376 40 1 7.8080 -10.8962 2.3190 41 1 9.1353 -9.4163 3.7282 42 1 8.3899 -7.1211 4.1957 43 1 6.3057 -6.2708 3.2716 44 1 2.8333 -3.7403 0.6155 45 1 2.1670 -4.0437 -1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958610934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:10 Heat of formation + Delta-G solvation = 1.630716 kcal Electronic energy + Delta-G solvation = -28547.609919 eV Core-core repulsion = 24530.768288 eV Total energy + Delta-G solvation = -4016.841631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.26270 -39.56511 -38.27963 -37.10698 -34.97777 -34.59496 -33.84694 -32.13228 -31.08449 -30.41629 -29.52443 -27.73280 -25.96568 -25.00445 -24.04145 -23.22358 -22.44240 -21.01769 -20.16182 -19.79055 -18.46781 -18.01785 -17.50039 -17.30001 -16.39520 -15.69553 -15.50778 -15.43277 -14.86765 -14.81473 -14.67497 -14.48356 -14.06942 -13.97230 -13.68292 -13.51991 -13.43257 -13.23856 -12.67641 -12.55068 -12.04675 -12.02090 -11.85480 -11.80504 -11.38924 -11.19894 -10.93653 -10.79030 -10.64463 -10.49186 -10.37870 -10.04870 -10.03166 -9.78141 -9.65855 -9.16848 -9.15553 -8.86055 -8.64292 -8.62931 -6.84793 -5.73057 -3.05762 -0.10786 0.36099 1.61269 2.21102 3.08389 3.11171 3.40312 3.44495 3.45635 3.81015 3.84998 4.19883 4.40975 4.45973 4.48001 4.59229 4.73399 4.79165 4.81936 4.99968 5.11916 5.14393 5.34619 5.40813 5.44648 5.55634 5.58013 5.61931 5.66110 5.71592 5.93155 5.97339 6.04526 6.07068 6.11857 6.13144 6.39061 6.42629 6.44503 6.52405 6.64541 6.92789 7.33020 7.40242 7.49851 7.66089 7.75464 8.20195 8.22416 8.26035 9.20015 9.80624 10.46519 11.39046 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.002626 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.457828 B =10658.732880 C =12701.330965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.564 6.564 14 C -0.110 4.110 15 H 0.089 0.911 16 C 0.137 3.863 17 N -0.702 5.702 18 C 0.565 3.435 19 O -0.534 6.534 20 C 0.121 3.879 21 C -0.124 4.124 22 C -0.064 4.064 23 C -0.089 4.089 24 C -0.103 4.103 25 C -0.108 4.108 26 C -0.106 4.106 27 C -0.082 4.082 28 C 0.124 3.876 29 N -0.441 5.441 30 C 0.145 3.855 31 H 0.253 0.747 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.375 0.625 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.411 0.589 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.038 0.962 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.571 -20.955 6.752 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.369 6.369 14 C -0.129 4.129 15 H 0.108 0.892 16 C 0.014 3.986 17 N -0.352 5.352 18 C 0.348 3.652 19 O -0.411 6.411 20 C -0.033 4.033 21 C -0.145 4.145 22 C -0.090 4.090 23 C -0.091 4.091 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.101 4.101 28 C 0.000 4.000 29 N -0.152 5.152 30 C 0.019 3.981 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.222 0.778 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.056 0.944 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.326 -20.610 6.588 24.423 hybrid contribution 0.482 0.742 0.027 0.885 sum 11.808 -19.869 6.615 24.041 Atomic orbital electron populations 1.69920 1.04909 1.25161 1.57390 1.24790 0.95754 0.97692 1.02329 0.86172 0.78433 0.83084 0.77917 1.21180 1.21617 1.21150 1.19036 0.90458 0.82372 1.43539 0.90427 1.44358 1.01354 0.99958 1.87214 1.21857 0.85350 0.88360 1.01623 1.23120 0.95109 0.96241 0.83233 0.92475 1.86404 1.48816 1.71411 1.30308 1.22683 0.97166 0.92995 1.00090 0.89239 1.21279 0.84371 0.92978 0.99934 1.45989 1.24701 1.13177 1.51357 1.17872 0.84146 0.82344 0.80809 1.90782 1.53562 1.58721 1.38005 1.21441 0.94860 0.91790 0.95164 1.21766 0.97329 0.95457 0.99949 1.21461 0.93278 0.99796 0.94452 1.18991 0.96459 0.94785 0.98866 1.20993 0.93457 1.00201 0.97498 1.21017 0.99910 0.93951 0.97713 1.20961 0.96236 0.95901 0.99481 1.20957 0.93627 1.00015 0.95468 1.18865 0.92098 0.91650 0.97351 1.67847 1.04270 1.35803 1.07297 1.21571 0.93726 0.85681 0.97161 0.93716 0.92975 0.93198 0.77793 0.89872 0.91537 0.75248 0.83094 0.83672 0.85056 0.85356 0.84987 0.84116 0.94419 0.95694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.97 10.31 55.49 0.57 -26.40 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.41 3.39 -170.06 -0.58 -15.99 16 10 C 0.15 3.64 5.14 -3.06 -0.02 3.62 16 11 C 0.08 1.53 4.08 -24.89 -0.10 1.43 16 12 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 13 O -0.56 -9.92 12.10 -35.23 -0.43 -10.35 16 14 C -0.11 -1.92 3.03 -88.46 -0.27 -2.19 16 15 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 16 C 0.14 2.22 4.74 -4.05 -0.02 2.20 16 17 N -0.70 -10.53 5.39 -61.11 -0.33 -10.86 16 18 C 0.56 8.70 7.81 -12.13 -0.09 8.61 16 19 O -0.53 -9.46 16.28 5.37 0.09 -9.37 16 20 C 0.12 1.62 6.75 -82.95 -0.56 1.07 16 21 C -0.12 -1.36 9.54 -39.44 -0.38 -1.74 16 22 C -0.06 -0.56 9.88 -39.26 -0.39 -0.95 16 23 C -0.09 -0.86 5.75 -106.71 -0.61 -1.48 16 24 C -0.10 -0.73 9.77 -39.52 -0.39 -1.12 16 25 C -0.11 -0.70 9.96 -39.89 -0.40 -1.09 16 26 C -0.11 -0.77 9.94 -39.94 -0.40 -1.17 16 27 C -0.08 -0.79 9.99 -39.41 -0.39 -1.18 16 28 C 0.12 1.44 6.61 -84.86 -0.56 0.87 16 29 N -0.44 -5.82 9.47 -7.54 -0.07 -5.89 16 30 C 0.14 3.05 6.40 -2.52 -0.02 3.03 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 33 H 0.05 1.31 7.43 -51.93 -0.39 0.92 16 34 H 0.38 5.20 9.12 45.56 0.42 5.62 16 35 H 0.08 1.51 7.42 -51.92 -0.39 1.12 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.41 5.85 7.64 -40.82 -0.31 5.54 16 38 H 0.15 1.51 7.60 -52.48 -0.40 1.11 16 39 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 43 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 44 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 45 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -34.24 376.56 -10.15 -44.39 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.22 Total: 8.60 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -4.84 Total: 3.07 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.41 Total: -59.13 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.34 Total: -19.72 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.24 -10.15 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958610934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.020 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds