Wall clock time and date at job start Sat Apr 11 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86790 * 120.00215 * 2 1 4 4 H 1.48503 * 109.47429 * 239.99547 * 3 2 1 5 5 H 1.48505 * 109.47382 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47291 * 119.99701 * 3 2 1 7 7 C 1.38819 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99418 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64787 * 359.95965 * 9 7 2 11 11 C 1.54333 * 107.26818 * 181.09432 * 10 9 7 12 12 H 1.09007 * 110.71756 * 140.55751 * 11 10 9 13 13 O 1.42903 * 110.71910 * 263.82667 * 11 10 9 14 14 C 1.55150 * 102.94477 * 22.19343 * 11 10 9 15 15 H 1.09002 * 111.04114 * 82.58415 * 14 11 10 16 16 C 1.52995 * 111.00731 * 206.42407 * 14 11 10 17 17 N 1.46497 * 109.47631 * 178.64627 * 16 14 11 18 18 C 1.34779 * 120.00204 * 180.02562 * 17 16 14 19 19 O 1.21500 * 119.99734 * 359.97438 * 18 17 16 20 20 C 1.48277 * 119.99864 * 180.02562 * 18 17 16 21 21 C 1.40275 * 119.23655 * 179.97438 * 20 18 17 22 22 C 1.36507 * 119.81287 * 180.02562 * 21 20 18 23 23 C 1.40750 * 118.24146 * 359.97438 * 22 21 20 24 24 C 1.40422 * 121.27006 * 180.25401 * 23 22 21 25 25 C 1.36132 * 119.64932 * 180.24467 * 24 23 22 26 26 C 1.39439 * 120.91134 * 359.49181 * 25 24 23 27 27 C 1.35994 * 121.08789 * 0.26347 * 26 25 24 28 28 C 1.40823 * 119.73480 * 359.97438 * 27 26 25 29 29 N 1.31877 * 119.24084 * 359.97346 * 20 18 17 30 30 C 1.47425 * 125.64832 * 179.97438 * 9 7 2 31 31 H 0.97005 * 119.99934 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.88271 * 300.50365 * 10 9 7 33 33 H 1.08990 * 109.88619 * 61.52312 * 10 9 7 34 34 H 0.96705 * 113.99701 * 293.52424 * 13 11 10 35 35 H 1.09010 * 109.46920 * 58.64333 * 16 14 11 36 36 H 1.09001 * 109.47097 * 298.64988 * 16 14 11 37 37 H 0.97000 * 119.99823 * 0.02562 * 17 16 14 38 38 H 1.08005 * 120.09381 * 359.97270 * 21 20 18 39 39 H 1.08001 * 120.87691 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.17742 * 359.97438 * 24 23 22 41 41 H 1.08002 * 119.54710 * 179.77992 * 25 24 23 42 42 H 1.08005 * 119.45640 * 180.27850 * 26 25 24 43 43 H 1.07995 * 120.13692 * 180.02562 * 27 26 25 44 44 H 1.09009 * 110.36492 * 36.99705 * 30 9 7 45 45 H 1.08997 * 110.46287 * 274.72330 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0008 11 6 -0.4486 -4.0441 0.0289 12 1 -1.2986 -4.2510 0.6792 13 8 -0.6890 -4.5354 -1.2914 14 6 0.8518 -4.6557 0.6138 15 1 0.8574 -4.5955 1.7022 16 6 1.0368 -6.1007 0.1465 17 7 2.2880 -6.6338 0.6909 18 6 2.6610 -7.8979 0.4094 19 8 1.9593 -8.5956 -0.2956 20 6 3.9272 -8.4376 0.9609 21 6 4.2997 -9.7556 0.6581 22 6 5.4627 -10.2645 1.1600 23 6 6.2562 -9.4347 1.9742 24 6 7.4670 -9.8913 2.5195 25 6 8.2061 -9.0622 3.3067 26 6 7.7829 -7.7603 3.5716 27 6 6.6186 -7.2819 3.0568 28 6 5.8230 -8.1099 2.2416 29 7 4.6772 -7.6673 1.7248 30 6 1.9333 -3.7312 0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5575 -2.0515 0.8842 33 1 -0.5548 -2.0827 -0.8999 34 1 -1.4907 -4.1834 -1.7020 35 1 1.0734 -6.1285 -0.9426 36 1 0.2009 -6.7059 0.4974 37 1 2.8481 -6.0769 1.2540 38 1 3.6677 -10.3664 0.0303 39 1 5.7663 -11.2768 0.9376 40 1 7.8080 -10.8962 2.3190 41 1 9.1353 -9.4163 3.7282 42 1 8.3899 -7.1211 4.1957 43 1 6.3057 -6.2708 3.2716 44 1 2.8333 -3.7403 0.6155 45 1 2.1670 -4.0437 -1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958610934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:09 Heat of formation + Delta-G solvation = -23.434877 kcal Electronic energy + Delta-G solvation = -28548.696845 eV Core-core repulsion = 24530.768288 eV Total energy + Delta-G solvation = -4017.928557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05591 -40.74005 -39.80373 -37.86276 -36.42992 -36.18254 -34.62900 -33.91818 -32.03907 -31.30152 -30.86812 -29.44894 -27.46136 -26.33437 -25.06409 -24.42535 -23.08495 -22.41762 -21.72257 -21.26641 -19.42783 -19.13740 -18.86312 -18.24615 -17.98794 -16.87283 -16.81684 -16.60064 -16.33328 -15.82334 -15.60227 -15.47909 -15.35640 -15.32797 -14.96706 -14.76922 -14.38988 -14.35679 -14.10567 -14.03481 -13.58704 -13.14870 -13.11039 -12.71366 -12.64355 -12.62478 -12.45524 -12.39248 -12.11470 -11.93684 -11.79526 -11.69883 -11.64368 -11.35251 -10.79980 -10.73317 -10.61906 -10.20898 -9.81341 -9.27609 -8.92820 -7.87185 -5.22551 -0.85470 -0.34768 0.91847 1.36844 1.44820 1.48188 1.54355 1.96860 2.20620 2.47891 2.92642 3.08152 3.26365 3.34646 3.53478 3.56671 3.66144 3.83139 3.86412 3.89413 3.94368 3.98730 4.15919 4.25011 4.38082 4.40324 4.51204 4.55955 4.60363 4.77983 4.80127 4.85350 4.92546 4.97206 5.03574 5.09042 5.26448 5.34735 5.37966 5.39841 5.44315 5.49825 5.51706 5.68629 5.86160 6.16258 6.30430 6.65883 6.93468 7.03436 7.08054 7.73989 8.38791 9.22874 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.002626 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.457828 B =10658.732880 C =12701.330965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.980 3.020 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.624 5.624 10 C 0.160 3.840 11 C 0.097 3.903 12 H 0.090 0.910 13 O -0.570 6.570 14 C -0.094 4.094 15 H 0.105 0.895 16 C 0.152 3.848 17 N -0.700 5.700 18 C 0.564 3.436 19 O -0.563 6.563 20 C 0.097 3.903 21 C -0.142 4.142 22 C -0.046 4.046 23 C -0.101 4.101 24 C -0.100 4.100 25 C -0.104 4.104 26 C -0.094 4.094 27 C -0.112 4.112 28 C 0.096 3.904 29 N -0.462 5.462 30 C 0.144 3.856 31 H 0.248 0.752 32 H 0.024 0.976 33 H 0.016 0.984 34 H 0.391 0.609 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.415 0.585 38 H 0.154 0.846 39 H 0.186 0.814 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.045 0.955 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.180 -23.110 8.104 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.035 3.965 11 C 0.037 3.963 12 H 0.108 0.892 13 O -0.378 6.378 14 C -0.113 4.113 15 H 0.123 0.877 16 C 0.029 3.971 17 N -0.351 5.351 18 C 0.350 3.650 19 O -0.442 6.442 20 C -0.056 4.056 21 C -0.162 4.162 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.130 4.130 28 C -0.027 4.027 29 N -0.174 5.174 30 C 0.019 3.981 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.241 0.759 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.251 0.749 38 H 0.172 0.828 39 H 0.204 0.796 40 H 0.184 0.816 41 H 0.181 0.819 42 H 0.175 0.825 43 H 0.153 0.847 44 H 0.063 0.937 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 13.943 -22.783 7.939 27.866 hybrid contribution -0.155 1.378 -0.347 1.429 sum 13.788 -21.406 7.592 26.570 Atomic orbital electron populations 1.70136 1.06182 1.25433 1.58209 1.25636 0.96707 1.00948 1.02475 0.85139 0.77175 0.78720 0.78214 1.20641 1.21856 1.20030 1.19419 0.90985 0.83745 1.43247 0.90224 1.44676 1.02407 1.00910 1.87011 1.21698 0.84333 0.91862 0.98649 1.22942 0.96607 0.92363 0.84359 0.89204 1.86384 1.50185 1.71096 1.30105 1.22569 0.95202 0.92908 1.00648 0.87695 1.21011 0.85354 0.92091 0.98657 1.45929 1.24405 1.13379 1.51348 1.18239 0.84704 0.81941 0.80139 1.90746 1.54735 1.59354 1.39351 1.21214 0.94491 0.93056 0.96841 1.21844 0.98691 0.94640 1.01063 1.21893 0.91672 1.01135 0.92469 1.19319 0.97707 0.94122 0.99168 1.21408 0.92069 1.01812 0.96546 1.21480 1.00827 0.93173 0.96698 1.21352 0.95067 0.96775 0.98151 1.21079 0.94975 1.00099 0.96882 1.19270 0.92027 0.93258 0.98174 1.67730 1.05289 1.36537 1.07889 1.21634 0.95101 0.84584 0.96778 0.94292 0.95762 0.96598 0.75891 0.91890 0.90435 0.74850 0.82808 0.79637 0.81650 0.81855 0.82495 0.84720 0.93701 0.97113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.05 10.31 21.65 0.22 -56.82 16 2 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 3 Si 0.98 46.16 29.55 68.60 2.03 48.18 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.25 -14.03 10.28 84.04 0.86 -13.16 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.62 -32.75 3.39 -691.93 -2.35 -35.10 16 10 C 0.16 7.82 5.14 86.73 0.45 8.26 16 11 C 0.10 3.56 4.08 31.78 0.13 3.69 16 12 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 13 O -0.57 -19.86 12.10 -148.98 -1.80 -21.66 16 14 C -0.09 -3.26 3.03 -9.40 -0.03 -3.29 16 15 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 16 C 0.15 4.91 4.74 86.38 0.41 5.32 16 17 N -0.70 -21.44 5.39 -465.55 -2.51 -23.95 16 18 C 0.56 17.93 7.81 86.91 0.68 18.61 16 19 O -0.56 -20.47 16.28 -3.72 -0.06 -20.53 16 20 C 0.10 2.66 6.75 42.30 0.29 2.94 16 21 C -0.14 -3.05 9.54 22.36 0.21 -2.83 16 22 C -0.05 -0.70 9.88 22.48 0.22 -0.48 16 23 C -0.10 -1.75 5.75 -21.22 -0.12 -1.87 16 24 C -0.10 -1.03 9.77 22.31 0.22 -0.81 16 25 C -0.10 -0.91 9.96 22.07 0.22 -0.69 16 26 C -0.09 -1.11 9.94 22.04 0.22 -0.90 16 27 C -0.11 -2.09 9.99 22.38 0.22 -1.86 16 28 C 0.10 2.20 6.61 40.47 0.27 2.47 16 29 N -0.46 -12.56 9.47 -177.77 -1.68 -14.25 16 30 C 0.14 6.19 6.40 86.86 0.56 6.74 16 31 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 32 H 0.02 1.31 7.38 -2.39 -0.02 1.29 16 33 H 0.02 0.87 7.43 -2.39 -0.02 0.85 16 34 H 0.39 10.69 9.12 -74.05 -0.68 10.01 16 35 H 0.06 2.31 7.42 -2.38 -0.02 2.30 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 37 H 0.41 12.12 7.64 -92.71 -0.71 11.41 16 38 H 0.15 3.08 7.60 -2.91 -0.02 3.06 16 39 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 41 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 42 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.01 0.50 8.00 -2.39 -0.02 0.49 16 Total: -1.00 -77.75 376.56 -1.23 -78.99 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.35 Total: 26.25 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 5.27 Total: 18.90 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -6.32 Total: -130.13 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.86 Total: -42.19 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -77.75 -1.23 -78.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958610934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.552 kcal (2) G-P(sol) polarization free energy of solvation -77.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds