Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48498 * 109.47043 * 268.53345 * 3 2 1 5 5 H 1.48500 * 109.47352 * 28.53579 * 3 2 1 6 6 H 1.48499 * 109.47209 * 148.53552 * 3 2 1 7 7 C 1.38810 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99466 * 342.46322 * 7 2 1 9 9 N 1.36935 * 120.00083 * 162.46665 * 7 2 1 10 10 C 1.47017 * 125.64898 * 146.63403 * 9 7 2 11 11 C 1.54327 * 107.26975 * 178.90139 * 10 9 7 12 12 H 1.09002 * 110.71896 * 96.35158 * 11 10 9 13 13 C 1.53007 * 110.71738 * 219.44145 * 11 10 9 14 14 N 1.46504 * 109.46932 * 293.54524 * 13 11 10 15 15 C 1.34780 * 119.99296 * 179.72518 * 14 13 11 16 16 O 1.21599 * 120.00569 * 0.02562 * 15 14 13 17 17 C 1.47449 * 119.99422 * 179.97438 * 15 14 13 18 18 C 1.38861 * 120.46512 * 354.27117 * 17 15 14 19 19 C 1.38902 * 120.67883 * 179.71965 * 18 17 15 20 20 C 1.36367 * 121.27060 * 0.55622 * 19 18 17 21 21 C 1.40398 * 119.98716 * 359.72523 * 20 19 18 22 22 C 1.40465 * 121.95349 * 179.97438 * 21 20 19 23 23 N 1.31281 * 119.88374 * 180.02562 * 22 21 20 24 24 C 1.32548 * 122.73176 * 359.97438 * 23 22 21 25 25 C 1.36330 * 121.82220 * 0.02562 * 24 23 22 26 26 C 1.40292 * 118.70167 * 359.97438 * 25 24 23 27 27 C 1.55155 * 102.94418 * 337.80536 * 11 10 9 28 28 H 1.09001 * 111.00542 * 277.43134 * 27 11 10 29 29 O 1.42894 * 111.00338 * 153.57517 * 27 11 10 30 30 C 1.47430 * 125.64599 * 326.58734 * 9 7 2 31 31 H 0.97002 * 120.00017 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.88557 * 59.48624 * 10 9 7 33 33 H 1.08997 * 110.00906 * 298.38890 * 10 9 7 34 34 H 1.09001 * 109.46320 * 173.55041 * 13 11 10 35 35 H 1.08992 * 109.47181 * 53.55054 * 13 11 10 36 36 H 0.96991 * 120.00254 * 0.02562 * 14 13 11 37 37 H 1.08000 * 119.65671 * 359.96908 * 18 17 15 38 38 H 1.08001 * 119.36724 * 180.28247 * 19 18 17 39 39 H 1.08002 * 120.01151 * 179.74288 * 20 19 18 40 40 H 1.08003 * 120.05769 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.08970 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.64900 * 179.97438 * 25 24 23 43 43 H 0.96707 * 114.00155 * 179.97438 * 29 27 11 44 44 H 1.09002 * 110.36580 * 323.00334 * 30 9 7 45 45 H 1.08994 * 110.36599 * 85.21959 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5286 2.0286 -1.3996 5 1 1.4324 2.6615 0.6688 6 1 3.5319 1.4495 0.7308 7 6 2.0104 -1.2021 0.0005 8 1 1.5080 -2.1156 0.2828 9 7 3.3320 -1.2297 -0.3567 10 6 4.3505 -2.1339 0.1970 11 6 5.6800 -1.8212 -0.5217 12 1 6.2867 -1.1363 0.0706 13 6 6.4521 -3.1090 -0.8159 14 7 6.8789 -3.7213 0.4448 15 6 7.5750 -4.8754 0.4316 16 8 7.8491 -5.4081 -0.6265 17 6 8.0051 -5.4913 1.7004 18 6 7.8030 -4.8334 2.9064 19 6 8.2012 -5.4121 4.1048 20 6 8.8097 -6.6321 4.1340 21 6 9.0392 -7.3305 2.9379 22 6 9.6628 -8.5891 2.9198 23 7 9.8578 -9.2062 1.7776 24 6 9.4881 -8.6922 0.6131 25 6 8.8759 -7.4773 0.5255 26 6 8.6338 -6.7581 1.7055 27 6 5.2129 -1.1480 -1.8392 28 1 4.9388 -1.8953 -2.5840 29 8 6.2157 -0.2656 -2.3470 30 6 3.9690 -0.3584 -1.3610 31 1 -0.4850 0.8401 -0.0004 32 1 4.0652 -3.1699 0.0144 33 1 4.4588 -1.9625 1.2679 34 1 7.3279 -2.8770 -1.4220 35 1 5.8089 -3.8027 -1.3573 36 1 6.6569 -3.2984 1.2890 37 1 7.3278 -3.8636 2.9131 38 1 8.0296 -4.8836 5.0309 39 1 9.1147 -7.0612 5.0770 40 1 9.9812 -9.0483 3.8441 41 1 9.6772 -9.2514 -0.2914 42 1 8.5830 -7.0762 -0.4336 43 1 5.9690 0.1781 -3.1700 44 1 3.2893 -0.1802 -2.1943 45 1 4.2685 0.5866 -0.9079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958671770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = 4.768614 kcal Electronic energy + Delta-G solvation = -28734.305280 eV Core-core repulsion = 24717.599719 eV Total energy + Delta-G solvation = -4016.705562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33985 -39.71668 -38.58253 -37.45001 -35.54196 -34.96264 -33.18676 -32.49152 -31.57462 -30.69038 -29.73983 -27.92327 -26.16228 -24.87784 -23.96953 -23.66487 -22.74838 -21.32715 -20.60009 -19.96070 -18.37387 -18.18629 -17.34591 -17.02156 -16.80339 -16.45540 -15.92225 -15.53741 -15.47715 -15.19911 -14.81536 -14.54722 -14.30468 -14.08143 -13.93393 -13.51820 -13.36725 -13.11830 -12.90657 -12.84927 -12.41987 -12.35362 -12.24898 -12.12418 -11.95311 -11.51615 -11.32553 -10.96455 -10.69330 -10.49613 -10.44838 -10.32254 -10.08913 -9.71290 -9.58421 -9.48313 -9.46415 -9.20933 -8.72535 -8.39368 -7.00705 -6.09245 -3.53135 -0.20802 0.55711 1.38548 2.40718 2.91107 3.05511 3.25382 3.38531 3.43050 3.82267 4.15245 4.19045 4.27611 4.28982 4.39089 4.43076 4.56168 4.60325 4.71687 4.75032 4.89328 5.05616 5.06480 5.21412 5.22242 5.34380 5.36065 5.53333 5.54876 5.57720 5.64599 5.65021 5.74018 5.86440 5.91494 6.04315 6.04982 6.23941 6.32800 6.34196 6.44332 6.48860 6.50759 6.60085 7.30511 7.69105 7.70671 7.82429 8.01856 8.21365 8.71181 9.54175 10.06917 11.06447 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.002425 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.290629 B =11544.388711 C =12232.200996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.033 3.967 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.272 1.272 7 C -0.251 4.251 8 H 0.087 0.913 9 N -0.603 5.603 10 C 0.136 3.864 11 C -0.108 4.108 12 H 0.090 0.910 13 C 0.133 3.867 14 N -0.716 5.716 15 C 0.561 3.439 16 O -0.535 6.535 17 C -0.127 4.127 18 C -0.054 4.054 19 C -0.130 4.130 20 C -0.059 4.059 21 C -0.121 4.121 22 C 0.140 3.860 23 N -0.488 5.488 24 C 0.072 3.928 25 C -0.153 4.153 26 C 0.012 3.988 27 C 0.096 3.904 28 H 0.072 0.928 29 O -0.565 6.565 30 C 0.087 3.913 31 H 0.266 0.734 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.402 0.598 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.378 0.622 44 H 0.058 0.942 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.594 -11.005 5.777 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.167 4.167 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.197 1.197 7 C -0.379 4.379 8 H 0.104 0.896 9 N -0.331 5.331 10 C 0.011 3.989 11 C -0.127 4.127 12 H 0.108 0.892 13 C 0.010 3.990 14 N -0.367 5.367 15 C 0.349 3.651 16 O -0.414 6.414 17 C -0.130 4.130 18 C -0.074 4.074 19 C -0.148 4.148 20 C -0.079 4.079 21 C -0.123 4.123 22 C -0.032 4.032 23 N -0.196 5.196 24 C -0.071 4.071 25 C -0.172 4.172 26 C 0.006 3.994 27 C 0.036 3.964 28 H 0.090 0.910 29 O -0.370 6.370 30 C -0.038 4.038 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.238 0.762 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.172 0.828 42 H 0.193 0.807 43 H 0.225 0.775 44 H 0.077 0.923 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 20.226 -12.299 5.391 24.278 hybrid contribution -0.566 2.374 0.060 2.441 sum 19.661 -9.925 5.451 22.688 Atomic orbital electron populations 1.69801 1.05762 1.26917 1.52046 1.25404 0.95227 0.97820 0.98277 0.86786 0.79474 0.84142 0.77865 1.21219 1.22703 1.19745 1.18556 0.81847 0.94393 1.43088 0.89561 1.44478 1.05522 1.41336 1.41739 1.21528 0.86322 0.95139 0.95891 1.22457 0.97503 0.95530 0.97215 0.89184 1.21448 0.98933 0.93501 0.85104 1.45938 1.55786 1.24282 1.10690 1.17986 0.78094 0.80600 0.88420 1.90594 1.56508 1.61933 1.32361 1.19863 1.03844 0.95693 0.93626 1.21571 0.95083 0.99162 0.91614 1.20870 0.99557 0.96102 0.98232 1.21201 0.95389 0.94194 0.97131 1.19033 1.02321 0.97353 0.93619 1.23183 0.93316 0.90045 0.96644 1.67404 1.17660 1.35828 0.98679 1.22364 0.95504 0.93740 0.95476 1.22962 0.97984 0.95237 1.01010 1.17927 0.95190 0.92975 0.93325 1.22955 0.87845 0.91477 0.94114 0.90980 1.86430 1.43347 1.62351 1.44877 1.22604 0.93344 0.94416 0.93448 0.92454 0.94366 0.94758 0.90737 0.90745 0.76244 0.84787 0.84603 0.84430 0.81918 0.82824 0.80692 0.77462 0.92341 0.94881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.97 55.49 0.78 -26.30 16 2 C 0.03 0.94 5.45 -17.43 -0.10 0.85 16 3 Si 0.89 21.98 24.67 -169.99 -4.19 17.78 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.27 -6.65 6.75 56.52 0.38 -6.27 16 7 C -0.25 -6.88 10.52 -15.06 -0.16 -7.04 16 8 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 9 N -0.60 -13.83 2.99 -170.07 -0.51 -14.34 16 10 C 0.14 2.47 6.52 -3.07 -0.02 2.45 16 11 C -0.11 -1.61 2.75 -88.78 -0.24 -1.86 16 12 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 13 C 0.13 1.76 4.99 -4.04 -0.02 1.74 16 14 N -0.72 -8.42 5.35 -61.37 -0.33 -8.75 16 15 C 0.56 7.31 7.73 -12.51 -0.10 7.21 16 16 O -0.53 -8.32 13.49 5.28 0.07 -8.25 16 17 C -0.13 -1.43 5.90 -104.70 -0.62 -2.05 16 18 C -0.05 -0.46 9.51 -39.11 -0.37 -0.83 16 19 C -0.13 -0.89 9.92 -40.01 -0.40 -1.29 16 20 C -0.06 -0.41 9.78 -39.44 -0.39 -0.80 16 21 C -0.12 -1.16 5.74 -106.88 -0.61 -1.78 16 22 C 0.14 1.27 11.05 -16.95 -0.19 1.08 16 23 N -0.49 -5.46 10.30 -13.11 -0.14 -5.59 16 24 C 0.07 0.79 11.07 -17.93 -0.20 0.60 16 25 C -0.15 -1.86 9.28 -39.50 -0.37 -2.23 16 26 C 0.01 0.14 5.77 -106.55 -0.61 -0.48 16 27 C 0.10 1.54 3.88 -24.58 -0.10 1.44 16 28 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 29 O -0.57 -8.13 13.47 -35.23 -0.47 -8.60 16 30 C 0.09 1.79 4.70 -2.52 -0.01 1.77 16 31 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.04 0.69 7.77 -51.93 -0.40 0.29 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.40 3.90 6.40 -40.82 -0.26 3.64 16 37 H 0.13 0.85 6.43 -52.49 -0.34 0.52 16 38 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 40 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 42 H 0.18 2.32 5.06 -52.48 -0.27 2.05 16 43 H 0.38 3.88 9.12 45.56 0.42 4.30 16 44 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 45 H 0.03 0.73 5.26 -51.93 -0.27 0.45 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -34.88 366.91 -8.67 -43.55 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.91 Total: 6.15 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -4.49 Total: -1.20 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.20 Total: -54.98 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.40 Total: -16.85 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.19 Total: 17.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.88 -8.67 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958671770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.323 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds