Wall clock time and date at job start Sat Apr 11 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48498 * 109.47043 * 268.53345 * 3 2 1 5 5 H 1.48500 * 109.47352 * 28.53579 * 3 2 1 6 6 H 1.48499 * 109.47209 * 148.53552 * 3 2 1 7 7 C 1.38810 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99466 * 342.46322 * 7 2 1 9 9 N 1.36935 * 120.00083 * 162.46665 * 7 2 1 10 10 C 1.47017 * 125.64898 * 146.63403 * 9 7 2 11 11 C 1.54327 * 107.26975 * 178.90139 * 10 9 7 12 12 H 1.09002 * 110.71896 * 96.35158 * 11 10 9 13 13 C 1.53007 * 110.71738 * 219.44145 * 11 10 9 14 14 N 1.46504 * 109.46932 * 293.54524 * 13 11 10 15 15 C 1.34780 * 119.99296 * 179.72518 * 14 13 11 16 16 O 1.21599 * 120.00569 * 0.02562 * 15 14 13 17 17 C 1.47449 * 119.99422 * 179.97438 * 15 14 13 18 18 C 1.38861 * 120.46512 * 354.27117 * 17 15 14 19 19 C 1.38902 * 120.67883 * 179.71965 * 18 17 15 20 20 C 1.36367 * 121.27060 * 0.55622 * 19 18 17 21 21 C 1.40398 * 119.98716 * 359.72523 * 20 19 18 22 22 C 1.40465 * 121.95349 * 179.97438 * 21 20 19 23 23 N 1.31281 * 119.88374 * 180.02562 * 22 21 20 24 24 C 1.32548 * 122.73176 * 359.97438 * 23 22 21 25 25 C 1.36330 * 121.82220 * 0.02562 * 24 23 22 26 26 C 1.40292 * 118.70167 * 359.97438 * 25 24 23 27 27 C 1.55155 * 102.94418 * 337.80536 * 11 10 9 28 28 H 1.09001 * 111.00542 * 277.43134 * 27 11 10 29 29 O 1.42894 * 111.00338 * 153.57517 * 27 11 10 30 30 C 1.47430 * 125.64599 * 326.58734 * 9 7 2 31 31 H 0.97002 * 120.00017 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.88557 * 59.48624 * 10 9 7 33 33 H 1.08997 * 110.00906 * 298.38890 * 10 9 7 34 34 H 1.09001 * 109.46320 * 173.55041 * 13 11 10 35 35 H 1.08992 * 109.47181 * 53.55054 * 13 11 10 36 36 H 0.96991 * 120.00254 * 0.02562 * 14 13 11 37 37 H 1.08000 * 119.65671 * 359.96908 * 18 17 15 38 38 H 1.08001 * 119.36724 * 180.28247 * 19 18 17 39 39 H 1.08002 * 120.01151 * 179.74288 * 20 19 18 40 40 H 1.08003 * 120.05769 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.08970 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.64900 * 179.97438 * 25 24 23 43 43 H 0.96707 * 114.00155 * 179.97438 * 29 27 11 44 44 H 1.09002 * 110.36580 * 323.00334 * 30 9 7 45 45 H 1.08994 * 110.36599 * 85.21959 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5286 2.0286 -1.3996 5 1 1.4324 2.6615 0.6688 6 1 3.5319 1.4495 0.7308 7 6 2.0104 -1.2021 0.0005 8 1 1.5080 -2.1156 0.2828 9 7 3.3320 -1.2297 -0.3567 10 6 4.3505 -2.1339 0.1970 11 6 5.6800 -1.8212 -0.5217 12 1 6.2867 -1.1363 0.0706 13 6 6.4521 -3.1090 -0.8159 14 7 6.8789 -3.7213 0.4448 15 6 7.5750 -4.8754 0.4316 16 8 7.8491 -5.4081 -0.6265 17 6 8.0051 -5.4913 1.7004 18 6 7.8030 -4.8334 2.9064 19 6 8.2012 -5.4121 4.1048 20 6 8.8097 -6.6321 4.1340 21 6 9.0392 -7.3305 2.9379 22 6 9.6628 -8.5891 2.9198 23 7 9.8578 -9.2062 1.7776 24 6 9.4881 -8.6922 0.6131 25 6 8.8759 -7.4773 0.5255 26 6 8.6338 -6.7581 1.7055 27 6 5.2129 -1.1480 -1.8392 28 1 4.9388 -1.8953 -2.5840 29 8 6.2157 -0.2656 -2.3470 30 6 3.9690 -0.3584 -1.3610 31 1 -0.4850 0.8401 -0.0004 32 1 4.0652 -3.1699 0.0144 33 1 4.4588 -1.9625 1.2679 34 1 7.3279 -2.8770 -1.4220 35 1 5.8089 -3.8027 -1.3573 36 1 6.6569 -3.2984 1.2890 37 1 7.3278 -3.8636 2.9131 38 1 8.0296 -4.8836 5.0309 39 1 9.1147 -7.0612 5.0770 40 1 9.9812 -9.0483 3.8441 41 1 9.6772 -9.2514 -0.2914 42 1 8.5830 -7.0762 -0.4336 43 1 5.9690 0.1781 -3.1700 44 1 3.2893 -0.1802 -2.1943 45 1 4.2685 0.5866 -0.9079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958671770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:20 Heat of formation + Delta-G solvation = -22.197269 kcal Electronic energy + Delta-G solvation = -28735.474609 eV Core-core repulsion = 24717.599719 eV Total energy + Delta-G solvation = -4017.874890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.09574 -40.73910 -39.87595 -38.15098 -36.78909 -36.27173 -34.30957 -33.89761 -32.58041 -31.80928 -30.69083 -29.42301 -27.61062 -25.76264 -25.13202 -24.39753 -23.81746 -22.80579 -21.69635 -21.25568 -19.26891 -18.98285 -18.84479 -18.50520 -17.62965 -17.31316 -17.07910 -16.82360 -16.56287 -16.20996 -15.96523 -15.64461 -15.39714 -15.17613 -15.02247 -14.75965 -14.61979 -14.32559 -14.28522 -13.83508 -13.63548 -13.54764 -13.29738 -13.03512 -12.98445 -12.89308 -12.69393 -12.46887 -12.32133 -12.15623 -11.80779 -11.55680 -11.18534 -11.05508 -10.95520 -10.78839 -10.33663 -10.26496 -10.12604 -9.11302 -8.92006 -8.25641 -5.66002 -0.89537 -0.13858 0.61213 1.28637 1.36847 1.47439 1.68534 1.97389 2.22772 2.36602 2.88354 3.08662 3.08871 3.39573 3.46177 3.50795 3.62096 3.65203 3.68990 3.77362 3.90481 3.93065 3.97233 4.19676 4.23159 4.26759 4.39699 4.44328 4.54659 4.70532 4.71887 4.76174 4.80871 4.83666 4.92336 4.95953 4.97484 5.07828 5.20836 5.25888 5.34006 5.36208 5.67055 5.74375 5.77685 6.08250 6.39905 6.70585 6.82423 6.95971 7.09167 7.44954 8.06457 8.94340 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.002425 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.290629 B =11544.388711 C =12232.200996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.023 4.023 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.305 1.305 6 H -0.264 1.264 7 C -0.244 4.244 8 H 0.051 0.949 9 N -0.622 5.622 10 C 0.134 3.866 11 C -0.091 4.091 12 H 0.101 0.899 13 C 0.145 3.855 14 N -0.709 5.709 15 C 0.558 3.442 16 O -0.570 6.570 17 C -0.163 4.163 18 C -0.040 4.040 19 C -0.134 4.134 20 C -0.041 4.041 21 C -0.138 4.138 22 C 0.150 3.850 23 N -0.515 5.515 24 C 0.068 3.932 25 C -0.182 4.182 26 C -0.007 4.007 27 C 0.112 3.888 28 H 0.084 0.916 29 O -0.565 6.565 30 C 0.081 3.919 31 H 0.265 0.735 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.413 0.587 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.180 0.820 40 H 0.203 0.797 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.398 0.602 44 H 0.045 0.955 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.163 -10.508 8.072 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.219 4.219 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.233 1.233 6 H -0.189 1.189 7 C -0.372 4.372 8 H 0.069 0.931 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.110 4.110 12 H 0.119 0.881 13 C 0.022 3.978 14 N -0.361 5.361 15 C 0.348 3.652 16 O -0.451 6.451 17 C -0.166 4.166 18 C -0.060 4.060 19 C -0.152 4.152 20 C -0.060 4.060 21 C -0.140 4.140 22 C -0.021 4.021 23 N -0.223 5.223 24 C -0.074 4.074 25 C -0.201 4.201 26 C -0.013 4.013 27 C 0.051 3.949 28 H 0.101 0.899 29 O -0.372 6.372 30 C -0.044 4.044 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.250 0.750 37 H 0.172 0.828 38 H 0.189 0.811 39 H 0.197 0.803 40 H 0.220 0.780 41 H 0.182 0.818 42 H 0.173 0.827 43 H 0.248 0.752 44 H 0.064 0.936 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 22.832 -11.793 7.676 26.820 hybrid contribution -1.348 2.128 -0.569 2.583 sum 21.484 -9.665 7.106 24.606 Atomic orbital electron populations 1.69929 1.07426 1.27643 1.54629 1.26024 0.95814 1.01141 0.98914 0.85769 0.78150 0.79774 0.78423 1.19867 1.23268 1.18866 1.18440 0.83945 0.93166 1.41698 0.93086 1.44555 1.05010 1.42290 1.43136 1.21642 0.86696 0.93940 0.96713 1.22298 0.95847 0.96369 0.96495 0.88068 1.21204 0.98477 0.92414 0.85744 1.45812 1.55522 1.24075 1.10679 1.18363 0.77558 0.80435 0.88883 1.90585 1.57903 1.62854 1.33805 1.19757 1.06687 0.96437 0.93698 1.21939 0.93294 0.99502 0.91224 1.21311 0.98812 0.96266 0.98766 1.21701 0.93169 0.93637 0.97534 1.19325 1.02837 0.97949 0.93864 1.23890 0.91316 0.89621 0.97317 1.67478 1.19088 1.36546 0.99221 1.22536 0.95042 0.93478 0.96309 1.22826 1.00151 0.96322 1.00833 1.18197 0.95577 0.93440 0.94120 1.22706 0.86289 0.91120 0.94803 0.89871 1.86406 1.42339 1.62226 1.46237 1.22700 0.94912 0.94404 0.92418 0.92548 0.94573 0.93782 0.90530 0.91803 0.74958 0.82821 0.81087 0.80285 0.78003 0.81807 0.82707 0.75197 0.93617 0.95493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.61 13.97 21.65 0.30 -58.31 16 2 C -0.02 -1.30 5.45 84.86 0.46 -0.83 16 3 Si 0.95 45.48 24.67 68.60 1.69 47.17 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.26 -12.12 6.75 99.48 0.67 -11.44 16 7 C -0.24 -13.60 10.52 84.03 0.88 -12.72 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 9 N -0.62 -28.24 2.99 -691.98 -2.07 -30.31 16 10 C 0.13 4.71 6.52 86.73 0.57 5.28 16 11 C -0.09 -2.52 2.75 -9.60 -0.03 -2.55 16 12 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 13 C 0.15 3.66 4.99 86.38 0.43 4.09 16 14 N -0.71 -15.90 5.35 -466.34 -2.49 -18.39 16 15 C 0.56 14.62 7.73 86.67 0.67 15.30 16 16 O -0.57 -18.59 13.49 -4.03 -0.05 -18.64 16 17 C -0.16 -3.56 5.90 -19.92 -0.12 -3.68 16 18 C -0.04 -0.56 9.51 22.58 0.21 -0.35 16 19 C -0.13 -1.26 9.92 21.99 0.22 -1.04 16 20 C -0.04 -0.39 9.78 22.36 0.22 -0.17 16 21 C -0.14 -2.35 5.74 -21.33 -0.12 -2.47 16 22 C 0.15 2.39 11.05 85.32 0.94 3.33 16 23 N -0.52 -11.19 10.30 -195.39 -2.01 -13.21 16 24 C 0.07 1.58 11.07 84.14 0.93 2.51 16 25 C -0.18 -4.72 9.28 22.32 0.21 -4.51 16 26 C -0.01 -0.18 5.77 -21.11 -0.12 -0.30 16 27 C 0.11 3.31 3.88 31.99 0.12 3.43 16 28 H 0.08 2.32 8.05 -2.39 -0.02 2.30 16 29 O -0.56 -14.45 13.47 -148.98 -2.01 -16.46 16 30 C 0.08 3.18 4.70 86.85 0.41 3.59 16 31 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.04 1.29 7.77 -2.39 -0.02 1.27 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.76 8.06 -2.39 -0.02 1.75 16 36 H 0.41 7.16 6.40 -92.71 -0.59 6.57 16 37 H 0.15 1.45 6.43 -2.91 -0.02 1.43 16 38 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 40 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.16 4.57 5.06 -2.91 -0.01 4.56 16 43 H 0.40 6.88 9.12 -74.05 -0.68 6.20 16 44 H 0.05 1.89 7.96 -2.39 -0.02 1.87 16 45 H 0.03 1.12 5.26 -2.39 -0.01 1.11 16 Total: -1.00 -79.42 366.91 -1.00 -80.42 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -0.25 Total: 18.83 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.89 Total: 8.89 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -6.27 Total: -120.22 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -2.06 Total: -35.10 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.69 Total: 47.17 kcal Total: -79.42 -1.00 -80.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958671770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.224 kcal (2) G-P(sol) polarization free energy of solvation -79.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds