Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00164 * 2 1 4 4 H 1.48499 * 109.47181 * 240.00142 * 3 2 1 5 5 H 1.48507 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47064 * 119.99950 * 3 2 1 7 7 C 1.38813 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99980 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64828 * 0.04917 * 9 7 2 11 11 C 1.54320 * 107.27028 * 181.02224 * 10 9 7 12 12 H 1.09007 * 110.87037 * 263.75332 * 11 10 9 13 13 O 1.42905 * 110.72270 * 140.55296 * 11 10 9 14 14 C 1.55158 * 102.94699 * 22.18931 * 11 10 9 15 15 H 1.08995 * 111.00440 * 82.56786 * 14 11 10 16 16 C 1.52996 * 111.00697 * 206.42700 * 14 11 10 17 17 N 1.46503 * 109.46949 * 184.99570 * 16 14 11 18 18 C 1.34773 * 119.99675 * 179.97438 * 17 16 14 19 19 O 1.21609 * 120.00298 * 0.02562 * 18 17 16 20 20 C 1.47452 * 120.00048 * 180.02562 * 18 17 16 21 21 C 1.38948 * 121.16715 * 359.72120 * 20 18 17 22 22 N 1.32193 * 121.31644 * 179.77116 * 21 20 18 23 23 C 1.31200 * 123.69925 * 0.50503 * 22 21 20 24 24 C 1.40388 * 120.90952 * 359.76987 * 23 22 21 25 25 C 1.40395 * 122.13755 * 179.97438 * 24 23 22 26 26 C 1.36233 * 119.48355 * 180.02562 * 25 24 23 27 27 C 1.39294 * 121.10636 * 359.95729 * 26 25 24 28 28 C 1.36445 * 120.94753 * 0.04250 * 27 26 25 29 29 C 1.39691 * 119.43624 * 359.97417 * 28 27 26 30 30 C 1.47424 * 125.64804 * 180.02562 * 9 7 2 31 31 H 0.97004 * 119.99602 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.88770 * 61.59886 * 10 9 7 33 33 H 1.09009 * 109.87952 * 300.43690 * 10 9 7 34 34 H 0.96705 * 113.99788 * 66.47530 * 13 11 10 35 35 H 1.08994 * 109.46942 * 304.99936 * 16 14 11 36 36 H 1.09000 * 109.47063 * 64.99400 * 16 14 11 37 37 H 0.96991 * 120.00002 * 0.02562 * 17 16 14 38 38 H 1.08003 * 119.33876 * 0.02562 * 21 20 18 39 39 H 1.07994 * 119.54764 * 179.74447 * 23 22 21 40 40 H 1.07993 * 120.25698 * 359.97438 * 25 24 23 41 41 H 1.07999 * 119.44475 * 179.97438 * 26 25 24 42 42 H 1.07997 * 119.52704 * 180.02562 * 27 26 25 43 43 H 1.07995 * 120.27792 * 179.97438 * 28 27 26 44 44 H 1.08994 * 110.36385 * 37.07160 * 30 9 7 45 45 H 1.09000 * 110.36772 * 274.74766 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5327 -0.0010 11 6 -0.4484 -4.0441 0.0255 12 1 -0.6331 -4.4202 -0.9808 13 8 -1.5631 -4.3161 0.8774 14 6 0.8517 -4.6563 0.6104 15 1 0.8565 -4.5966 1.6987 16 6 1.0369 -6.1008 0.1417 17 7 2.2058 -6.6835 0.8054 18 6 2.5637 -7.9565 0.5449 19 8 1.9167 -8.6213 -0.2414 20 6 3.7398 -8.5432 1.2133 21 6 4.4996 -7.8040 2.1115 22 7 5.5519 -8.3284 2.7158 23 6 5.9669 -9.5574 2.5190 24 6 5.2938 -10.4125 1.6322 25 6 5.7156 -11.7316 1.4018 26 6 5.0220 -12.5146 0.5289 27 6 3.9002 -12.0286 -0.1388 28 6 3.4628 -10.7518 0.0615 29 6 4.1510 -9.9218 0.9497 30 6 1.9335 -3.7311 -0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5541 -2.0843 -0.9028 33 1 -0.5578 -2.0522 0.8826 34 1 -2.4007 -3.9548 0.5565 35 1 0.1492 -6.6811 0.3934 36 1 1.1868 -6.1162 -0.9378 37 1 2.7216 -6.1534 1.4329 38 1 4.2226 -6.7818 2.3233 39 1 6.8385 -9.9160 3.0462 40 1 6.5835 -12.1224 1.9119 41 1 5.3473 -13.5291 0.3518 42 1 3.3692 -12.6716 -0.8250 43 1 2.5920 -10.3861 -0.4622 44 1 2.8326 -3.7405 0.6154 45 1 2.1670 -4.0419 -1.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958723203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = 2.809918 kcal Electronic energy + Delta-G solvation = -28568.039150 eV Core-core repulsion = 24551.248653 eV Total energy + Delta-G solvation = -4016.790497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.15352 -39.48274 -38.21019 -37.65599 -35.23619 -34.74201 -33.11797 -32.26712 -31.47623 -30.45351 -29.33426 -27.60840 -25.89264 -24.94482 -23.81530 -23.58904 -22.62388 -21.05149 -20.33329 -19.90197 -18.31737 -17.81155 -17.67431 -16.95811 -16.72776 -16.15826 -15.74598 -15.49533 -15.21777 -15.02529 -14.55455 -14.44078 -14.08238 -14.05851 -13.84723 -13.37544 -13.18428 -13.07185 -12.68092 -12.48025 -12.46890 -12.22749 -12.07588 -11.73817 -11.50785 -11.25493 -10.99970 -10.82197 -10.65206 -10.35462 -10.26933 -10.09378 -9.90674 -9.84485 -9.54043 -9.41217 -9.24742 -9.11457 -8.68254 -8.41247 -6.93423 -5.78264 -3.12969 -0.24271 0.57419 1.37675 2.56206 2.99232 3.00315 3.37260 3.41535 3.42686 3.79480 3.93778 4.19913 4.34797 4.37508 4.41977 4.53677 4.67388 4.73184 4.84425 4.91219 5.00018 5.13627 5.17337 5.30248 5.40915 5.44178 5.47238 5.63487 5.64825 5.76576 5.81195 5.95791 5.99515 6.04759 6.15184 6.16984 6.24563 6.29713 6.37505 6.49475 6.56756 6.77527 7.35945 7.38585 7.46210 7.56537 7.71658 8.08181 8.15528 8.16891 9.13127 9.73656 10.37571 11.33265 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.002315 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.058301 B =12091.264710 C =13185.788622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.152 3.848 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.567 6.567 14 C -0.109 4.109 15 H 0.090 0.910 16 C 0.133 3.867 17 N -0.715 5.715 18 C 0.566 3.434 19 O -0.537 6.537 20 C -0.172 4.172 21 C 0.123 3.877 22 N -0.495 5.495 23 C 0.175 3.825 24 C -0.122 4.122 25 C -0.090 4.090 26 C -0.120 4.120 27 C -0.098 4.098 28 C -0.110 4.110 29 C 0.012 3.988 30 C 0.141 3.859 31 H 0.254 0.746 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.376 0.624 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.166 0.834 44 H 0.043 0.957 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -23.676 2.681 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.027 3.973 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.372 6.372 14 C -0.129 4.129 15 H 0.109 0.891 16 C 0.010 3.990 17 N -0.365 5.365 18 C 0.353 3.647 19 O -0.416 6.416 20 C -0.178 4.178 21 C -0.021 4.021 22 N -0.203 5.203 23 C 0.004 3.996 24 C -0.125 4.125 25 C -0.109 4.109 26 C -0.138 4.138 27 C -0.118 4.118 28 C -0.128 4.128 29 C 0.007 3.993 30 C 0.014 3.986 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.223 0.777 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.177 0.823 39 H 0.184 0.816 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.183 0.817 44 H 0.061 0.939 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.291 -23.514 3.013 25.114 hybrid contribution -0.154 1.006 -0.610 1.186 sum 8.137 -22.508 2.403 24.054 Atomic orbital electron populations 1.69930 1.04941 1.25313 1.56808 1.24822 0.95763 0.97802 1.01976 0.86165 0.78453 0.82976 0.77956 1.21104 1.21557 1.21071 1.19018 0.90442 0.82227 1.44275 0.90287 1.44298 1.01315 0.99927 1.87392 1.21826 0.85197 0.88463 1.01837 1.23120 0.85057 0.97924 0.91595 0.92505 1.86421 1.18875 1.80088 1.51774 1.22623 0.96296 0.92210 1.01738 0.89139 1.21443 0.87185 0.93127 0.97223 1.45965 1.31403 1.12787 1.46370 1.17780 0.83550 0.81734 0.81623 1.90630 1.54576 1.60312 1.36075 1.21928 0.98816 0.94942 1.02068 1.22827 0.89405 0.99385 0.90488 1.67128 1.14571 1.14121 1.24437 1.23320 0.96588 0.88135 0.91606 1.19027 0.97060 0.96294 1.00080 1.20958 0.99756 0.92098 0.98132 1.21000 0.95734 1.00244 0.96776 1.21200 0.96038 0.95879 0.98657 1.21828 1.00904 0.93183 0.96840 1.18914 0.93502 0.91913 0.94960 1.21629 0.94047 0.85810 0.97069 0.93601 0.93620 0.92374 0.77676 0.90852 0.91006 0.76299 0.82274 0.81642 0.84742 0.85503 0.85347 0.81700 0.93903 0.95873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.31 55.49 0.57 -26.02 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.90 3.39 -170.09 -0.58 -15.48 16 10 C 0.15 3.56 5.15 -3.06 -0.02 3.55 16 11 C 0.08 1.51 3.80 -24.90 -0.09 1.42 16 12 H 0.06 0.96 8.04 -51.92 -0.42 0.54 16 13 O -0.57 -9.64 13.39 -35.23 -0.47 -10.11 16 14 C -0.11 -1.82 2.77 -88.48 -0.25 -2.07 16 15 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 16 C 0.13 1.93 5.13 -4.04 -0.02 1.91 16 17 N -0.71 -9.19 5.46 -61.38 -0.33 -9.53 16 18 C 0.57 7.85 7.77 -12.51 -0.10 7.75 16 19 O -0.54 -8.68 13.74 5.27 0.07 -8.61 16 20 C -0.17 -2.13 6.07 -102.66 -0.62 -2.76 16 21 C 0.12 1.38 10.71 -17.13 -0.18 1.19 16 22 N -0.50 -5.50 10.22 -12.58 -0.13 -5.63 16 23 C 0.18 1.56 11.00 -17.01 -0.19 1.38 16 24 C -0.12 -1.18 5.74 -106.89 -0.61 -1.80 16 25 C -0.09 -0.64 9.82 -39.49 -0.39 -1.03 16 26 C -0.12 -0.85 9.94 -39.91 -0.40 -1.24 16 27 C -0.10 -0.85 9.96 -39.84 -0.40 -1.25 16 28 C -0.11 -1.26 9.32 -39.69 -0.37 -1.63 16 29 C 0.01 0.15 5.90 -104.75 -0.62 -0.47 16 30 C 0.14 2.73 6.65 -2.54 -0.02 2.72 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 33 H 0.06 1.54 7.30 -51.92 -0.38 1.16 16 34 H 0.38 4.95 9.12 45.56 0.42 5.37 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 37 H 0.40 4.42 6.58 -40.82 -0.27 4.15 16 38 H 0.16 1.46 6.44 -52.48 -0.34 1.12 16 39 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.17 2.14 5.24 -52.49 -0.28 1.87 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.02 0.45 7.91 -51.93 -0.41 0.04 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -34.02 371.76 -9.79 -43.81 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.98 Total: 8.27 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -4.52 Total: 0.90 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.47 Total: -56.66 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.40 Total: -18.72 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.02 -9.79 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958723203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.623 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds