Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48498 * 109.46830 * 274.98318 * 3 2 1 5 5 H 1.48500 * 109.47255 * 34.98233 * 3 2 1 6 6 H 1.48491 * 109.47431 * 154.98266 * 3 2 1 7 7 C 1.38814 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99695 * 186.82803 * 7 2 1 9 9 N 1.36933 * 120.00165 * 6.83742 * 7 2 1 10 10 C 1.47023 * 125.64886 * 353.83700 * 9 7 2 11 11 C 1.54318 * 107.27515 * 181.09972 * 10 9 7 12 12 H 1.08999 * 110.72351 * 140.55800 * 11 10 9 13 13 O 1.42902 * 110.72294 * 263.83820 * 11 10 9 14 14 C 1.55164 * 102.93992 * 22.19675 * 11 10 9 15 15 H 1.09002 * 111.03807 * 82.58497 * 14 11 10 16 16 C 1.52996 * 111.00570 * 206.42500 * 14 11 10 17 17 N 1.46497 * 109.47500 * 178.64865 * 16 14 11 18 18 C 1.34778 * 120.00483 * 179.97438 * 17 16 14 19 19 O 1.21598 * 119.99632 * 0.02562 * 18 17 16 20 20 C 1.47442 * 120.00034 * 179.97438 * 18 17 16 21 21 C 1.38951 * 121.17274 * 0.02562 * 20 18 17 22 22 N 1.32195 * 121.31577 * 180.02562 * 21 20 18 23 23 C 1.31195 * 123.69927 * 0.02562 * 22 21 20 24 24 C 1.40381 * 120.91392 * 359.97438 * 23 22 21 25 25 C 1.40400 * 122.14045 * 180.02562 * 24 23 22 26 26 C 1.36228 * 119.48156 * 179.97438 * 25 24 23 27 27 C 1.39293 * 121.11043 * 0.02562 * 26 25 24 28 28 C 1.36446 * 120.94426 * 359.97438 * 27 26 25 29 29 C 1.39684 * 119.43553 * 359.75957 * 28 27 26 30 30 C 1.47428 * 125.64796 * 173.89146 * 9 7 2 31 31 H 0.97005 * 120.00378 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.88306 * 300.52257 * 10 9 7 33 33 H 1.09002 * 109.87429 * 61.52682 * 10 9 7 34 34 H 0.96698 * 113.99467 * 293.51746 * 13 11 10 35 35 H 1.09001 * 109.47176 * 298.65016 * 16 14 11 36 36 H 1.09003 * 109.47523 * 58.64519 * 16 14 11 37 37 H 0.96999 * 119.99569 * 0.02562 * 17 16 14 38 38 H 1.07996 * 119.34266 * 0.02562 * 21 20 18 39 39 H 1.08002 * 119.54351 * 180.02562 * 23 22 21 40 40 H 1.07991 * 120.25749 * 359.95785 * 25 24 23 41 41 H 1.08000 * 119.44353 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.53017 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.27792 * 180.02562 * 28 27 26 44 44 H 1.08993 * 110.36789 * 36.99082 * 30 9 7 45 45 H 1.08991 * 110.36233 * 274.66627 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1071 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5963 1.4121 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0845 -1.2055 0.1117 9 7 1.3327 -2.3839 -0.1401 10 6 -0.1294 -2.5350 -0.1718 11 6 -0.4314 -4.0413 -0.3170 12 1 -1.2866 -4.3241 0.2968 13 8 -0.6553 -4.3824 -1.6865 14 6 0.8668 -4.7083 0.2096 15 1 0.8609 -4.7708 1.2978 16 6 1.0653 -6.0908 -0.4150 17 7 2.3142 -6.6754 0.0796 18 6 2.6973 -7.8986 -0.3372 19 8 2.0065 -8.5166 -1.1243 20 6 3.9545 -8.4866 0.1602 21 6 4.7626 -7.8017 1.0594 22 7 5.8906 -8.3261 1.5068 23 6 6.3356 -9.5078 1.1508 24 6 5.6171 -10.3069 0.2475 25 6 6.0688 -11.5752 -0.1507 26 6 5.3277 -12.3052 -1.0303 27 6 4.1289 -11.8144 -1.5422 28 6 3.6605 -10.5861 -1.1766 29 6 4.3927 -9.8135 -0.2721 30 6 1.9488 -3.7156 -0.2838 31 1 -0.4851 0.8401 -0.0004 32 1 -0.5611 -2.1580 0.7554 33 1 -0.5401 -1.9885 -1.0208 34 1 -1.4548 -3.9905 -2.0638 35 1 0.2296 -6.7357 -0.1433 36 1 1.1132 -5.9959 -1.4999 37 1 2.8650 -6.1825 0.7077 38 1 4.4632 -6.8214 1.3995 39 1 7.2672 -9.8712 1.5589 40 1 6.9967 -11.9688 0.2371 41 1 5.6760 -13.2805 -1.3365 42 1 3.5615 -12.4150 -2.2377 43 1 2.7293 -10.2163 -1.5798 44 1 2.8421 -3.7892 0.3363 45 1 2.1937 -3.9095 -1.3280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958723206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = 4.256160 kcal Electronic energy + Delta-G solvation = -28709.636967 eV Core-core repulsion = 24692.909184 eV Total energy + Delta-G solvation = -4016.727783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.12843 -39.45308 -38.25368 -37.63560 -35.03447 -34.63273 -33.08446 -32.17573 -31.45612 -30.42581 -29.30907 -27.75004 -25.85339 -24.94075 -23.79934 -23.60068 -22.61835 -21.01777 -20.22790 -19.75169 -18.29749 -17.75457 -17.65417 -17.35837 -16.47528 -16.06245 -15.67584 -15.35953 -15.16080 -14.85742 -14.53032 -14.39787 -14.04088 -13.99723 -13.75718 -13.55874 -13.25819 -13.04055 -12.72042 -12.60368 -12.46001 -12.21179 -11.90412 -11.71147 -11.47811 -11.25305 -10.84658 -10.65380 -10.50053 -10.33492 -10.27123 -10.08988 -10.00579 -9.81720 -9.49224 -9.39281 -9.22283 -9.03762 -8.66439 -8.38845 -6.88985 -5.78689 -3.10667 -0.21946 0.59291 1.39928 2.58925 3.02836 3.06228 3.37533 3.43142 3.44575 3.81795 3.95993 4.22004 4.37566 4.39583 4.44470 4.55798 4.66815 4.75045 4.87511 4.94054 5.06757 5.19385 5.27358 5.30878 5.38357 5.46141 5.49797 5.57166 5.66520 5.79025 5.86333 5.99277 6.05539 6.07038 6.18299 6.26272 6.33743 6.35117 6.42313 6.54504 6.60061 6.85874 7.32194 7.43891 7.48374 7.58554 7.71619 8.13282 8.17559 8.20797 9.15105 9.76017 10.41778 11.33835 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.002369 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.659271 B =11814.005557 C =13009.492997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.152 3.848 11 C 0.084 3.916 12 H 0.057 0.943 13 O -0.564 6.564 14 C -0.111 4.111 15 H 0.089 0.911 16 C 0.140 3.860 17 N -0.717 5.717 18 C 0.565 3.435 19 O -0.536 6.536 20 C -0.171 4.171 21 C 0.122 3.878 22 N -0.495 5.495 23 C 0.174 3.826 24 C -0.122 4.122 25 C -0.090 4.090 26 C -0.119 4.119 27 C -0.099 4.099 28 C -0.110 4.110 29 C 0.012 3.988 30 C 0.144 3.856 31 H 0.253 0.747 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.376 0.624 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.400 0.600 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.166 0.834 44 H 0.036 0.964 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.866 -23.569 1.156 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.027 3.973 11 C 0.024 3.976 12 H 0.075 0.925 13 O -0.369 6.369 14 C -0.131 4.131 15 H 0.107 0.893 16 C 0.017 3.983 17 N -0.367 5.367 18 C 0.352 3.648 19 O -0.415 6.415 20 C -0.177 4.177 21 C -0.022 4.022 22 N -0.202 5.202 23 C 0.003 3.997 24 C -0.124 4.124 25 C -0.110 4.110 26 C -0.137 4.137 27 C -0.118 4.118 28 C -0.127 4.127 29 C 0.007 3.993 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.223 0.777 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.235 0.765 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.183 0.817 44 H 0.054 0.946 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.224 -23.447 1.285 24.881 hybrid contribution -0.288 1.105 -0.280 1.176 sum 7.935 -22.342 1.005 23.731 Atomic orbital electron populations 1.69939 1.04972 1.25142 1.56965 1.24817 0.95737 0.97739 1.02097 0.86100 0.78691 0.83462 0.77543 1.21588 1.21765 1.20585 1.19074 0.91146 0.82482 1.42938 0.90333 1.44359 1.01305 1.01190 1.86030 1.21872 0.85423 0.88550 1.01466 1.23096 0.95130 0.97199 0.82215 0.92467 1.86399 1.49034 1.75300 1.26201 1.22703 0.97299 0.93269 0.99808 0.89265 1.21246 0.84256 0.92596 1.00178 1.46040 1.25573 1.17584 1.47546 1.17767 0.84501 0.81384 0.81150 1.90629 1.55155 1.60816 1.34885 1.21956 0.97656 0.95854 1.02193 1.22820 0.88973 0.98863 0.91551 1.67125 1.14619 1.13300 1.25201 1.23310 0.97620 0.88440 0.90371 1.19025 0.95929 0.96946 1.00542 1.20954 0.99868 0.92729 0.97434 1.20997 0.95155 1.00245 0.97351 1.21199 0.95815 0.95875 0.98932 1.21836 1.01491 0.93686 0.95695 1.18920 0.93175 0.92175 0.95061 1.21572 0.93544 0.85527 0.97546 0.93717 0.93319 0.92847 0.77732 0.91531 0.89843 0.76475 0.82300 0.81666 0.84761 0.85521 0.85352 0.81674 0.94607 0.95578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 10.36 55.49 0.57 -25.99 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 21.92 29.56 -169.99 -5.02 16.89 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.27 10.26 -15.06 -0.15 -6.42 16 8 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 9 N -0.60 -15.01 3.39 -170.07 -0.58 -15.58 16 10 C 0.15 3.52 5.15 -3.07 -0.02 3.51 16 11 C 0.08 1.49 4.09 -24.90 -0.10 1.38 16 12 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 13 O -0.56 -9.63 12.10 -35.23 -0.43 -10.06 16 14 C -0.11 -1.83 3.03 -88.47 -0.27 -2.10 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 16 C 0.14 2.11 4.74 -4.05 -0.02 2.09 16 17 N -0.72 -9.47 5.36 -61.38 -0.33 -9.80 16 18 C 0.57 8.06 7.77 -12.51 -0.10 7.96 16 19 O -0.54 -8.94 13.74 5.28 0.07 -8.87 16 20 C -0.17 -2.17 6.07 -102.66 -0.62 -2.79 16 21 C 0.12 1.39 10.71 -17.13 -0.18 1.21 16 22 N -0.50 -5.58 10.22 -12.59 -0.13 -5.71 16 23 C 0.17 1.59 11.00 -17.02 -0.19 1.40 16 24 C -0.12 -1.20 5.74 -106.89 -0.61 -1.82 16 25 C -0.09 -0.66 9.82 -39.49 -0.39 -1.05 16 26 C -0.12 -0.87 9.94 -39.91 -0.40 -1.26 16 27 C -0.10 -0.88 9.96 -39.84 -0.40 -1.27 16 28 C -0.11 -1.28 9.32 -39.69 -0.37 -1.65 16 29 C 0.01 0.15 5.91 -104.75 -0.62 -0.47 16 30 C 0.14 2.89 6.40 -2.53 -0.02 2.87 16 31 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 32 H 0.05 1.24 7.55 -51.93 -0.39 0.84 16 33 H 0.05 1.38 7.29 -51.93 -0.38 1.00 16 34 H 0.38 5.07 9.12 45.56 0.42 5.48 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16 37 H 0.40 4.50 6.44 -40.82 -0.26 4.24 16 38 H 0.16 1.49 6.44 -52.49 -0.34 1.15 16 39 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 41 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.17 2.20 5.24 -52.49 -0.28 1.92 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -34.21 369.88 -9.77 -43.98 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.96 Total: 8.30 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -4.55 Total: 1.26 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.46 Total: -57.08 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.35 Total: -18.93 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.21 -9.77 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958723206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.237 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds