Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48498 * 109.46830 * 274.98318 * 3 2 1 5 5 H 1.48500 * 109.47255 * 34.98233 * 3 2 1 6 6 H 1.48491 * 109.47431 * 154.98266 * 3 2 1 7 7 C 1.38814 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99695 * 186.82803 * 7 2 1 9 9 N 1.36933 * 120.00165 * 6.83742 * 7 2 1 10 10 C 1.47023 * 125.64886 * 353.83700 * 9 7 2 11 11 C 1.54318 * 107.27515 * 181.09972 * 10 9 7 12 12 H 1.08999 * 110.72351 * 140.55800 * 11 10 9 13 13 O 1.42902 * 110.72294 * 263.83820 * 11 10 9 14 14 C 1.55164 * 102.93992 * 22.19675 * 11 10 9 15 15 H 1.09002 * 111.03807 * 82.58497 * 14 11 10 16 16 C 1.52996 * 111.00570 * 206.42500 * 14 11 10 17 17 N 1.46497 * 109.47500 * 178.64865 * 16 14 11 18 18 C 1.34778 * 120.00483 * 179.97438 * 17 16 14 19 19 O 1.21598 * 119.99632 * 0.02562 * 18 17 16 20 20 C 1.47442 * 120.00034 * 179.97438 * 18 17 16 21 21 C 1.38951 * 121.17274 * 0.02562 * 20 18 17 22 22 N 1.32195 * 121.31577 * 180.02562 * 21 20 18 23 23 C 1.31195 * 123.69927 * 0.02562 * 22 21 20 24 24 C 1.40381 * 120.91392 * 359.97438 * 23 22 21 25 25 C 1.40400 * 122.14045 * 180.02562 * 24 23 22 26 26 C 1.36228 * 119.48156 * 179.97438 * 25 24 23 27 27 C 1.39293 * 121.11043 * 0.02562 * 26 25 24 28 28 C 1.36446 * 120.94426 * 359.97438 * 27 26 25 29 29 C 1.39684 * 119.43553 * 359.75957 * 28 27 26 30 30 C 1.47428 * 125.64796 * 173.89146 * 9 7 2 31 31 H 0.97005 * 120.00378 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.88306 * 300.52257 * 10 9 7 33 33 H 1.09002 * 109.87429 * 61.52682 * 10 9 7 34 34 H 0.96698 * 113.99467 * 293.51746 * 13 11 10 35 35 H 1.09001 * 109.47176 * 298.65016 * 16 14 11 36 36 H 1.09003 * 109.47523 * 58.64519 * 16 14 11 37 37 H 0.96999 * 119.99569 * 0.02562 * 17 16 14 38 38 H 1.07996 * 119.34266 * 0.02562 * 21 20 18 39 39 H 1.08002 * 119.54351 * 180.02562 * 23 22 21 40 40 H 1.07991 * 120.25749 * 359.95785 * 25 24 23 41 41 H 1.08000 * 119.44353 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.53017 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.27792 * 180.02562 * 28 27 26 44 44 H 1.08993 * 110.36789 * 36.99082 * 30 9 7 45 45 H 1.08991 * 110.36233 * 274.66627 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1071 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5963 1.4121 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0845 -1.2055 0.1117 9 7 1.3327 -2.3839 -0.1401 10 6 -0.1294 -2.5350 -0.1718 11 6 -0.4314 -4.0413 -0.3170 12 1 -1.2866 -4.3241 0.2968 13 8 -0.6553 -4.3824 -1.6865 14 6 0.8668 -4.7083 0.2096 15 1 0.8609 -4.7708 1.2978 16 6 1.0653 -6.0908 -0.4150 17 7 2.3142 -6.6754 0.0796 18 6 2.6973 -7.8986 -0.3372 19 8 2.0065 -8.5166 -1.1243 20 6 3.9545 -8.4866 0.1602 21 6 4.7626 -7.8017 1.0594 22 7 5.8906 -8.3261 1.5068 23 6 6.3356 -9.5078 1.1508 24 6 5.6171 -10.3069 0.2475 25 6 6.0688 -11.5752 -0.1507 26 6 5.3277 -12.3052 -1.0303 27 6 4.1289 -11.8144 -1.5422 28 6 3.6605 -10.5861 -1.1766 29 6 4.3927 -9.8135 -0.2721 30 6 1.9488 -3.7156 -0.2838 31 1 -0.4851 0.8401 -0.0004 32 1 -0.5611 -2.1580 0.7554 33 1 -0.5401 -1.9885 -1.0208 34 1 -1.4548 -3.9905 -2.0638 35 1 0.2296 -6.7357 -0.1433 36 1 1.1132 -5.9959 -1.4999 37 1 2.8650 -6.1825 0.7077 38 1 4.4632 -6.8214 1.3995 39 1 7.2672 -9.8712 1.5589 40 1 6.9967 -11.9688 0.2371 41 1 5.6760 -13.2805 -1.3365 42 1 3.5615 -12.4150 -2.2377 43 1 2.7293 -10.2163 -1.5798 44 1 2.8421 -3.7892 0.3363 45 1 2.1937 -3.9095 -1.3280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958723206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = -20.828395 kcal Electronic energy + Delta-G solvation = -28710.724715 eV Core-core repulsion = 24692.909184 eV Total energy + Delta-G solvation = -4017.815531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.93645 -40.58309 -39.69994 -38.35051 -36.42908 -36.15445 -34.12131 -33.69868 -32.17008 -31.69914 -30.50934 -29.38202 -27.37016 -26.15198 -24.94682 -24.49793 -23.51921 -22.34110 -21.74240 -21.13365 -19.24549 -18.98335 -18.72164 -18.41440 -17.96605 -16.96234 -16.83459 -16.65374 -16.47474 -15.92082 -15.78666 -15.52862 -15.34479 -15.23504 -14.80874 -14.70394 -14.39995 -14.37714 -14.09731 -13.72219 -13.54375 -13.17180 -13.15686 -13.12360 -12.90625 -12.69996 -12.44242 -12.33506 -12.08293 -11.92232 -11.78734 -11.57896 -11.11476 -11.06163 -10.81446 -10.71637 -10.41175 -10.20929 -10.08022 -9.13824 -8.91577 -7.88869 -5.22661 -0.97680 -0.13155 0.66281 1.44938 1.46963 1.55378 1.72852 1.99390 2.19160 2.47425 3.05876 3.20833 3.28125 3.32733 3.48880 3.54466 3.63631 3.70560 3.87034 3.89188 3.91356 3.98454 4.02033 4.27704 4.32785 4.41028 4.49460 4.55163 4.59611 4.65918 4.77009 4.80976 4.89399 4.97475 5.04019 5.09896 5.30327 5.36613 5.39332 5.41177 5.51344 5.53020 5.57917 5.69132 5.91010 6.16423 6.39359 6.82015 6.92131 7.07550 7.08647 7.74269 8.39077 9.21969 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.002369 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.659271 B =11814.005557 C =13009.492997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.976 3.024 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.242 4.242 8 H 0.083 0.917 9 N -0.624 5.624 10 C 0.159 3.841 11 C 0.096 3.904 12 H 0.089 0.911 13 O -0.570 6.570 14 C -0.094 4.094 15 H 0.109 0.891 16 C 0.156 3.844 17 N -0.711 5.711 18 C 0.565 3.435 19 O -0.568 6.568 20 C -0.202 4.202 21 C 0.129 3.871 22 N -0.522 5.522 23 C 0.190 3.810 24 C -0.139 4.139 25 C -0.074 4.074 26 C -0.124 4.124 27 C -0.088 4.088 28 C -0.149 4.149 29 C -0.009 4.009 30 C 0.142 3.858 31 H 0.247 0.753 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.391 0.609 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.171 0.829 39 H 0.209 0.791 40 H 0.177 0.823 41 H 0.163 0.837 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.051 0.949 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.461 -26.133 2.128 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.033 3.967 11 C 0.036 3.964 12 H 0.107 0.893 13 O -0.378 6.378 14 C -0.113 4.113 15 H 0.127 0.873 16 C 0.033 3.967 17 N -0.362 5.362 18 C 0.353 3.647 19 O -0.449 6.449 20 C -0.207 4.207 21 C -0.015 4.015 22 N -0.229 5.229 23 C 0.020 3.980 24 C -0.141 4.141 25 C -0.093 4.093 26 C -0.142 4.142 27 C -0.107 4.107 28 C -0.167 4.167 29 C -0.014 4.014 30 C 0.017 3.983 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.240 0.760 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.247 0.753 38 H 0.188 0.812 39 H 0.225 0.775 40 H 0.194 0.806 41 H 0.180 0.820 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.070 0.930 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 10.838 -26.030 2.262 28.287 hybrid contribution -0.999 1.761 -0.635 2.122 sum 9.839 -24.269 1.627 26.238 Atomic orbital electron populations 1.70145 1.06226 1.25333 1.58094 1.25635 0.96645 1.00930 1.02558 0.85094 0.78010 0.79341 0.77131 1.21796 1.22005 1.19103 1.19457 0.91672 0.83817 1.42157 0.89960 1.44679 1.02327 1.02269 1.85768 1.21701 0.84523 0.91976 0.98483 1.22942 0.96867 0.93386 0.83196 0.89349 1.86384 1.50327 1.75121 1.25995 1.22594 0.95078 0.92826 1.00834 0.87273 1.20923 0.85385 0.91839 0.98581 1.45901 1.25150 1.17507 1.47638 1.18089 0.84896 0.81168 0.80525 1.90619 1.56304 1.61651 1.36348 1.21820 0.97617 0.97012 1.04281 1.23013 0.88804 0.99119 0.90602 1.67231 1.14740 1.14633 1.26337 1.24038 0.98161 0.87246 0.88586 1.19324 0.95299 0.98378 1.01095 1.21466 1.00783 0.91111 0.95968 1.21405 0.94174 1.01670 0.96926 1.21523 0.96435 0.94642 0.98107 1.21689 1.01611 0.95575 0.97815 1.19181 0.94459 0.92181 0.95580 1.21678 0.95159 0.84358 0.97097 0.94341 0.96150 0.96455 0.75969 0.90799 0.92225 0.75289 0.81168 0.77490 0.80587 0.81972 0.83610 0.84372 0.93026 0.97082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.36 10.36 21.65 0.22 -56.14 16 2 C -0.06 -3.66 5.48 84.86 0.47 -3.19 16 3 Si 0.98 45.68 29.56 68.60 2.03 47.70 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.24 -13.50 10.26 84.03 0.86 -12.63 16 8 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 9 N -0.62 -31.66 3.39 -692.00 -2.35 -34.01 16 10 C 0.16 7.56 5.15 86.73 0.45 8.00 16 11 C 0.10 3.38 4.09 31.78 0.13 3.51 16 12 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 13 O -0.57 -19.42 12.10 -148.98 -1.80 -21.22 16 14 C -0.09 -3.02 3.03 -9.40 -0.03 -3.05 16 15 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 16 C 0.16 4.67 4.74 86.38 0.41 5.07 16 17 N -0.71 -18.84 5.36 -466.37 -2.50 -21.34 16 18 C 0.56 16.70 7.77 86.67 0.67 17.37 16 19 O -0.57 -20.06 13.74 -4.02 -0.06 -20.12 16 20 C -0.20 -5.22 6.07 -18.59 -0.11 -5.33 16 21 C 0.13 2.86 10.71 84.81 0.91 3.77 16 22 N -0.52 -10.86 10.22 -193.73 -1.98 -12.84 16 23 C 0.19 2.90 11.00 85.31 0.94 3.84 16 24 C -0.14 -2.41 5.74 -21.33 -0.12 -2.54 16 25 C -0.07 -0.78 9.82 22.33 0.22 -0.56 16 26 C -0.12 -1.35 9.94 22.06 0.22 -1.13 16 27 C -0.09 -1.44 9.96 22.10 0.22 -1.22 16 28 C -0.15 -3.60 9.32 22.20 0.21 -3.39 16 29 C -0.01 -0.21 5.91 -19.94 -0.12 -0.33 16 30 C 0.14 5.71 6.40 86.86 0.56 6.26 16 31 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 32 H 0.02 1.07 7.55 -2.39 -0.02 1.05 16 33 H 0.02 0.94 7.29 -2.39 -0.02 0.92 16 34 H 0.39 10.50 9.12 -74.06 -0.68 9.83 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 2.10 7.42 -2.39 -0.02 2.08 16 37 H 0.41 9.03 6.44 -92.71 -0.60 8.43 16 38 H 0.17 3.09 6.44 -2.91 -0.02 3.08 16 39 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.18 0.36 8.06 -2.92 -0.02 0.33 16 41 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.14 4.04 5.24 -2.91 -0.02 4.02 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.01 0.49 8.00 -2.39 -0.02 0.47 16 Total: -1.00 -78.36 369.88 -0.79 -79.14 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.22 Total: 24.36 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 5.87 Total: 14.46 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.61 Total: -124.33 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.86 Total: -41.34 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -78.36 -0.79 -79.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958723206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.313 kcal (2) G-P(sol) polarization free energy of solvation -78.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds