Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00430 * 2 1 4 4 H 1.48503 * 109.46957 * 274.81643 * 3 2 1 5 5 H 1.48504 * 109.46972 * 34.81280 * 3 2 1 6 6 H 1.48493 * 109.47153 * 154.81557 * 3 2 1 7 7 C 1.38819 * 119.99544 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99495 * 170.81729 * 7 2 1 9 9 N 1.36936 * 120.00066 * 350.81095 * 7 2 1 10 10 C 1.48147 * 127.83769 * 164.39027 * 9 7 2 11 11 C 1.54390 * 104.61675 * 140.41323 * 10 9 7 12 12 H 1.09003 * 117.61655 * 242.76779 * 11 10 9 13 13 C 1.54287 * 106.22236 * 23.28678 * 11 10 9 14 14 H 1.08997 * 121.81913 * 221.52231 * 13 11 10 15 15 C 1.48152 * 127.83811 * 344.38819 * 9 7 2 16 16 C 1.52996 * 118.12269 * 87.18974 * 11 10 9 17 17 H 1.09009 * 117.44319 * 14.46932 * 16 11 10 18 18 N 1.46501 * 117.44513 * 159.20973 * 16 11 10 19 19 C 1.34772 * 120.00355 * 205.00341 * 18 16 11 20 20 O 1.21284 * 120.00062 * 0.02562 * 19 18 16 21 21 C 1.50702 * 120.00153 * 180.02562 * 19 18 16 22 22 H 1.09000 * 109.35755 * 299.72865 * 21 19 18 23 23 C 1.52647 * 109.36149 * 59.32807 * 21 19 18 24 24 N 1.46124 * 110.98029 * 69.66625 * 23 21 19 25 25 C 1.34677 * 121.02380 * 40.30884 * 24 23 21 26 26 O 1.21553 * 120.34662 * 172.04707 * 25 24 23 27 27 C 1.47827 * 119.30512 * 352.02513 * 25 24 23 28 28 C 1.39325 * 120.93144 * 166.63572 * 27 25 24 29 29 C 1.38064 * 119.60932 * 181.09741 * 28 27 25 30 30 C 1.38378 * 120.16717 * 359.87009 * 29 28 27 31 31 C 1.38411 * 120.41934 * 359.69211 * 30 29 28 32 32 C 1.37833 * 119.96605 * 0.27645 * 31 30 29 33 33 H 0.97002 * 119.99839 * 0.02562 * 1 2 3 34 34 H 1.09002 * 110.40715 * 21.63210 * 10 9 7 35 35 H 1.08998 * 110.40868 * 259.19819 * 10 9 7 36 36 H 1.08997 * 110.40645 * 338.37117 * 15 9 7 37 37 H 1.08995 * 110.40393 * 100.80317 * 15 9 7 38 38 H 0.97000 * 119.99816 * 25.00417 * 18 16 11 39 39 H 1.09001 * 109.17298 * 190.04908 * 23 21 19 40 40 H 1.08996 * 109.17719 * 309.32914 * 23 21 19 41 41 H 0.97002 * 119.49055 * 220.28738 * 24 23 21 42 42 H 1.08001 * 120.19609 * 1.11112 * 28 27 25 43 43 H 1.07999 * 119.91016 * 180.14866 * 29 28 27 44 44 H 1.07998 * 119.78879 * 179.71175 * 30 29 28 45 45 H 1.08003 * 120.01694 * 180.25345 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5023 2.6211 0.7993 6 1 3.5950 1.4128 0.5957 7 6 2.0102 -1.2023 -0.0005 8 1 3.0798 -1.2082 -0.1498 9 7 1.3386 -2.3806 0.1883 10 6 1.8189 -3.7546 -0.0874 11 6 1.2876 -4.5971 1.0922 12 1 2.0205 -5.0706 1.7456 13 6 0.0708 -3.8329 1.6541 14 1 -0.1028 -3.7371 2.7259 15 6 -0.0332 -2.5706 0.7147 16 6 -0.1172 -5.1925 0.9781 17 1 -0.5799 -5.2025 -0.0088 18 7 -0.4381 -6.3350 1.8371 19 6 -1.4006 -7.2043 1.4706 20 8 -2.0008 -7.0411 0.4294 21 6 -1.7311 -8.3793 2.3546 22 1 -0.8456 -9.0042 2.4710 23 6 -2.1737 -7.8729 3.7249 24 7 -3.4764 -7.2160 3.6442 25 6 -4.4602 -7.7176 2.8733 26 8 -5.5803 -7.2481 2.9243 27 6 -4.1635 -8.8448 1.9640 28 6 -5.1905 -9.5685 1.3618 29 6 -4.8826 -10.6306 0.5351 30 6 -3.5616 -10.9720 0.3043 31 6 -2.5380 -10.2501 0.8932 32 6 -2.8324 -9.1873 1.7200 33 1 -0.4850 0.8401 -0.0004 34 1 2.9084 -3.7788 -0.1113 35 1 1.4091 -4.1187 -1.0295 36 1 -0.3409 -1.7014 1.2959 37 1 -0.7322 -2.7497 -0.1021 38 1 0.0421 -6.4658 2.6697 39 1 -2.2396 -8.7152 4.4136 40 1 -1.4373 -7.1616 4.0987 41 1 -3.6353 -6.4061 4.1540 42 1 -6.2213 -9.3002 1.5405 43 1 -5.6748 -11.1935 0.0639 44 1 -3.3279 -11.8068 -0.3398 45 1 -1.5092 -10.5197 0.7053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960310563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = -2.830795 kcal Electronic energy + Delta-G solvation = -29127.472604 eV Core-core repulsion = 25110.437507 eV Total energy + Delta-G solvation = -4017.035097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.18705 -40.81414 -39.73814 -39.10042 -37.07886 -36.10907 -34.36202 -33.28769 -32.15944 -32.02241 -30.20646 -28.78407 -27.61827 -25.70577 -24.99527 -23.97076 -22.84371 -22.00358 -21.86978 -20.89407 -20.22060 -18.86636 -18.65602 -18.35452 -18.08817 -17.57584 -16.82689 -16.72965 -16.39898 -15.97136 -15.64783 -15.55384 -15.42581 -15.20964 -14.86812 -14.68879 -14.64191 -14.20714 -13.78128 -13.56845 -13.43647 -13.33827 -13.30425 -13.11263 -12.85659 -12.74053 -12.50466 -12.08416 -12.03977 -12.03541 -11.89044 -11.69031 -11.14216 -11.09053 -10.82983 -10.73298 -10.28911 -9.92712 -9.76755 -9.70889 -8.94394 -7.93428 -5.30825 -0.19576 0.33089 1.45948 1.47028 1.48716 1.57597 1.74806 1.91565 2.19824 2.47252 2.83969 2.86638 3.26384 3.29083 3.47941 3.58444 3.60177 3.76909 3.85306 3.90213 3.94815 4.09132 4.15838 4.32605 4.35393 4.37733 4.43657 4.46416 4.55913 4.67105 4.78758 4.85108 4.91692 4.99052 5.01306 5.27896 5.29936 5.37800 5.39146 5.43845 5.47317 5.53650 5.62108 5.76687 5.94087 6.04677 6.14514 6.51265 6.97775 7.04937 7.22296 7.65797 8.43966 9.20392 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.002374 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.312580 B =11793.658834 C =12204.958991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.983 3.017 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.239 4.239 8 H 0.086 0.914 9 N -0.616 5.616 10 C 0.145 3.855 11 C -0.153 4.153 12 H 0.147 0.853 13 C -0.186 4.186 14 H 0.131 0.869 15 C 0.188 3.812 16 C 0.114 3.886 17 H 0.095 0.905 18 N -0.676 5.676 19 C 0.517 3.483 20 O -0.577 6.577 21 C -0.081 4.081 22 H 0.181 0.819 23 C 0.114 3.886 24 N -0.721 5.721 25 C 0.556 3.444 26 O -0.587 6.587 27 C -0.152 4.152 28 C -0.083 4.083 29 C -0.129 4.129 30 C -0.089 4.089 31 C -0.116 4.116 32 C -0.039 4.039 33 H 0.249 0.751 34 H 0.068 0.932 35 H 0.015 0.985 36 H 0.053 0.947 37 H -0.010 1.010 38 H 0.422 0.578 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.411 0.589 42 H 0.122 0.878 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 -27.727 10.444 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.810 3.190 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.187 1.187 7 C -0.368 4.368 8 H 0.104 0.896 9 N -0.340 5.340 10 C 0.020 3.980 11 C -0.174 4.174 12 H 0.165 0.835 13 C -0.207 4.207 14 H 0.149 0.851 15 C 0.062 3.938 16 C 0.007 3.993 17 H 0.113 0.887 18 N -0.327 5.327 19 C 0.305 3.695 20 O -0.455 6.455 21 C -0.103 4.103 22 H 0.198 0.802 23 C -0.009 4.009 24 N -0.373 5.373 25 C 0.345 3.655 26 O -0.469 6.469 27 C -0.155 4.155 28 C -0.102 4.102 29 C -0.147 4.147 30 C -0.107 4.107 31 C -0.133 4.133 32 C -0.040 4.040 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.008 0.992 38 H 0.261 0.739 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.248 0.752 42 H 0.140 0.860 43 H 0.171 0.829 44 H 0.178 0.822 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.014 -27.292 9.624 28.957 hybrid contribution -0.164 1.907 0.022 1.915 sum -1.178 -25.384 9.646 27.181 Atomic orbital electron populations 1.70122 1.06760 1.25752 1.57209 1.25815 0.96448 1.01579 1.02094 0.85012 0.77986 0.78698 0.77296 1.21462 1.22061 1.18676 1.19428 0.91491 0.83377 1.42490 0.89597 1.45425 1.13831 1.01308 1.73453 1.21317 0.98222 0.84315 0.94153 1.24171 0.90600 1.01197 1.01425 0.83514 1.25098 1.04128 0.91477 1.00034 0.85088 1.21344 0.85929 0.93923 0.92629 1.21339 0.98073 0.84895 0.95022 0.88715 1.45060 1.38171 1.24554 1.24872 1.21009 0.78508 0.83716 0.86280 1.90770 1.51926 1.75499 1.27347 1.20848 1.00667 0.94231 0.94510 0.80237 1.21765 0.83983 1.00874 0.94310 1.45702 1.13649 1.30276 1.47633 1.18669 0.83862 0.83046 0.79914 1.90760 1.23622 1.63202 1.69332 1.19769 0.95187 0.98325 1.02264 1.21320 0.98789 0.94734 0.95344 1.21491 0.98313 0.96844 0.98008 1.21778 0.92074 0.99439 0.97427 1.21341 1.01515 0.94665 0.95828 1.19573 0.91694 0.95376 0.97390 0.94198 0.91327 0.96709 0.92820 0.99201 0.73942 0.86536 0.85410 0.75157 0.85956 0.82931 0.82168 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.34 10.87 21.65 0.24 -58.10 16 2 C -0.07 -3.76 5.40 84.86 0.46 -3.31 16 3 Si 0.98 45.47 29.56 68.60 2.03 47.50 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.24 -13.33 10.35 84.04 0.87 -12.46 16 8 H 0.09 4.50 7.84 -2.91 -0.02 4.48 16 9 N -0.62 -31.74 3.38 -681.40 -2.30 -34.04 16 10 C 0.15 5.84 7.04 86.53 0.61 6.45 16 11 C -0.15 -4.65 6.98 -9.89 -0.07 -4.72 16 12 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 13 C -0.19 -6.56 7.34 -8.70 -0.06 -6.62 16 14 H 0.13 3.95 8.14 -2.39 -0.02 3.93 16 15 C 0.19 9.44 5.76 87.72 0.51 9.95 16 16 C 0.11 3.47 5.92 44.99 0.27 3.74 16 17 H 0.09 3.69 7.40 -2.38 -0.02 3.67 16 18 N -0.68 -13.22 5.38 -442.53 -2.38 -15.60 16 19 C 0.52 11.75 7.02 87.66 0.62 12.36 16 20 O -0.58 -20.46 15.59 -3.04 -0.05 -20.51 16 21 C -0.08 -1.01 2.73 -12.43 -0.03 -1.04 16 22 H 0.18 0.39 8.08 -2.39 -0.02 0.37 16 23 C 0.11 0.99 6.36 86.33 0.55 1.54 16 24 N -0.72 -13.66 5.44 -467.53 -2.54 -16.20 16 25 C 0.56 15.72 7.81 86.80 0.68 16.40 16 26 O -0.59 -21.70 17.37 -3.88 -0.07 -21.77 16 27 C -0.15 -3.78 5.80 -20.15 -0.12 -3.90 16 28 C -0.08 -1.93 9.63 22.49 0.22 -1.71 16 29 C -0.13 -2.13 10.04 22.26 0.22 -1.90 16 30 C -0.09 -1.20 10.04 22.34 0.22 -0.98 16 31 C -0.12 -1.67 9.72 22.22 0.22 -1.45 16 32 C -0.04 -0.72 4.17 -19.66 -0.08 -0.81 16 33 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 3.04 6.52 -2.39 -0.02 3.03 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.42 4.21 8.10 -92.71 -0.75 3.46 16 39 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.13 0.30 7.24 -2.39 -0.02 0.28 16 41 H 0.41 7.23 8.92 -92.71 -0.83 6.40 16 42 H 0.12 2.99 7.78 -2.91 -0.02 2.97 16 43 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 44 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -89.99 374.23 -0.54 -90.53 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.53 Total: 16.66 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.07 Total: 11.53 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -6.99 Total: -123.94 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.11 Total: -42.28 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -89.99 -0.54 -90.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960310563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.702 kcal (2) G-P(sol) polarization free energy of solvation -89.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds