Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99976 * 2 1 4 4 H 1.48494 * 109.47066 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.46678 * 240.00199 * 3 2 1 6 6 H 1.48495 * 109.47254 * 120.00270 * 3 2 1 7 7 C 1.38806 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00174 * 213.53122 * 7 2 1 9 9 N 1.36942 * 120.00025 * 33.52421 * 7 2 1 10 10 C 1.43463 * 118.94168 * 202.38714 * 9 7 2 11 11 C 1.53794 * 107.95645 * 273.61107 * 10 9 7 12 12 C 1.47139 * 111.84190 * 281.66278 * 11 10 9 13 13 N 1.48210 * 110.34006 * 58.29944 * 12 11 10 14 14 C 1.34779 * 119.97023 * 102.46874 * 13 12 11 15 15 O 1.21726 * 119.99903 * 355.71631 * 14 13 12 16 16 C 1.46401 * 120.00268 * 175.71393 * 14 13 12 17 17 O 1.35382 * 126.81423 * 5.15372 * 16 14 13 18 18 C 1.33661 * 107.95134 * 179.89531 * 17 16 14 19 19 N 1.30362 * 109.72755 * 0.37322 * 18 17 16 20 20 C 1.34544 * 109.01638 * 359.77258 * 19 18 17 21 21 C 1.48131 * 126.53357 * 180.02562 * 20 19 18 22 22 C 1.39468 * 120.13782 * 133.72078 * 21 20 19 23 23 C 1.37982 * 119.86438 * 179.67883 * 22 21 20 24 24 C 1.38352 * 120.13251 * 0.61415 * 23 22 21 25 25 C 1.38348 * 120.27017 * 359.67939 * 24 23 22 26 26 C 1.37983 * 120.13369 * 0.02562 * 25 24 23 27 27 C 1.43622 * 120.06420 * 282.49230 * 13 12 11 28 28 C 1.48853 * 118.93638 * 22.11509 * 9 7 2 29 29 H 0.96999 * 119.99932 * 180.88742 * 1 2 3 30 30 H 1.08999 * 109.76376 * 33.22183 * 10 9 7 31 31 H 1.08998 * 109.76576 * 153.94181 * 10 9 7 32 32 H 1.09005 * 109.01036 * 42.27473 * 11 10 9 33 33 H 1.09005 * 109.00834 * 161.05880 * 11 10 9 34 34 H 1.09002 * 109.32466 * 178.56446 * 12 11 10 35 35 H 1.08992 * 109.32881 * 298.20888 * 12 11 10 36 36 H 1.07994 * 125.13575 * 180.13887 * 18 17 16 37 37 H 1.07996 * 120.06830 * 359.97438 * 22 21 20 38 38 H 1.08001 * 119.93686 * 180.31521 * 23 22 21 39 39 H 1.07996 * 119.86366 * 179.70053 * 24 23 22 40 40 H 1.08002 * 119.93279 * 180.02562 * 25 24 23 41 41 H 1.07998 * 120.06564 * 180.02562 * 26 25 24 42 42 H 1.08992 * 108.87302 * 211.44518 * 27 13 12 43 43 H 1.09007 * 108.86835 * 329.88317 * 27 13 12 44 44 H 1.08996 * 109.48059 * 260.62458 * 28 9 7 45 45 H 1.08999 * 109.48370 * 20.66178 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6963 -1.2126 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 2.9554 -1.2797 0.5172 9 7 1.4964 -2.2897 -0.6540 10 6 1.9289 -3.6015 -0.2663 11 6 3.2140 -3.9268 -1.0460 12 6 2.9265 -4.3285 -2.4319 13 7 2.1887 -3.2539 -3.1373 14 6 2.8359 -2.4499 -4.0040 15 8 4.0399 -2.5551 -4.1491 16 6 2.0909 -1.4500 -4.7711 17 8 0.7766 -1.1487 -4.6502 18 6 0.4928 -0.1824 -5.5290 19 7 1.5655 0.1306 -6.2004 20 6 2.5896 -0.6281 -5.7692 21 6 3.9846 -0.5914 -6.2661 22 6 5.0487 -0.5700 -5.3648 23 6 6.3460 -0.5425 -5.8339 24 6 6.5921 -0.5234 -7.1952 25 6 5.5406 -0.5384 -8.0942 26 6 4.2390 -0.5720 -7.6373 27 6 0.7848 -3.0683 -2.8978 28 6 0.5025 -2.0730 -1.7406 29 1 -0.4850 -0.8399 0.0130 30 1 2.1325 -3.6210 0.8044 31 1 1.1558 -4.3309 -0.5077 32 1 3.8550 -3.0452 -1.0576 33 1 3.7388 -4.7388 -0.5426 34 1 3.8639 -4.5242 -2.9526 35 1 2.3210 -5.2347 -2.4266 36 1 -0.4791 0.2681 -5.6651 37 1 4.8577 -0.5796 -4.3019 38 1 7.1710 -0.5310 -5.1369 39 1 7.6091 -0.4971 -7.5575 40 1 5.7389 -0.5238 -9.1557 41 1 3.4191 -0.5841 -8.3401 42 1 0.3185 -2.6922 -3.8084 43 1 0.3395 -4.0312 -2.6476 44 1 -0.5025 -2.2378 -1.3522 45 1 0.5861 -1.0514 -2.1114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981302952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = 60.870021 kcal Electronic energy + Delta-G solvation = -31164.574238 eV Core-core repulsion = 27150.301416 eV Total energy + Delta-G solvation = -4014.272822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.23677 -39.74549 -38.87364 -37.21331 -35.13719 -34.40848 -32.99603 -31.69789 -30.87013 -30.76246 -29.27046 -27.65630 -25.61893 -24.19890 -23.76467 -23.25773 -22.54085 -21.78615 -20.84062 -19.83693 -19.44912 -17.70057 -17.45379 -16.85624 -16.58044 -16.21433 -16.10152 -15.24042 -14.88676 -14.78657 -14.52240 -14.20678 -13.93259 -13.67039 -13.53772 -13.32612 -13.22093 -13.11226 -12.69603 -12.56429 -12.41691 -12.18326 -11.46566 -11.38423 -11.18049 -11.09173 -10.87666 -10.76122 -10.65308 -10.41760 -10.34417 -10.27619 -10.03755 -9.92160 -9.52555 -9.24329 -8.72620 -8.43030 -8.24527 -8.14083 -6.94219 -6.21400 -3.19064 0.74051 1.50387 1.60325 2.55047 2.60114 3.27528 3.38748 3.46271 3.52864 3.68096 3.89824 4.08443 4.55767 4.67249 4.79248 5.05109 5.08470 5.10539 5.22627 5.26302 5.39580 5.44816 5.47593 5.55815 5.59653 5.64529 5.74870 5.77131 5.87488 5.89978 5.99946 6.13088 6.20053 6.25873 6.31327 6.34914 6.57127 6.58769 6.66488 6.69316 6.71846 6.81697 6.92586 7.07831 7.09982 7.51937 7.70987 8.02378 8.28745 8.52107 9.09497 9.82093 10.20707 11.12564 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004713 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.476590 B = 5939.665168 C = 6342.875579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.015 4.015 3 Si 1.048 2.952 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.362 4.362 8 H 0.056 0.944 9 N -0.594 5.594 10 C 0.164 3.836 11 C -0.170 4.170 12 C 0.133 3.867 13 N -0.571 5.571 14 C 0.607 3.393 15 O -0.519 6.519 16 C -0.080 4.080 17 O -0.172 6.172 18 C 0.192 3.808 19 N -0.485 5.485 20 C 0.104 3.896 21 C -0.024 4.024 22 C -0.048 4.048 23 C -0.127 4.127 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.086 4.086 27 C 0.079 3.921 28 C 0.143 3.857 29 H 0.268 0.732 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.254 0.746 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.034 0.966 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 -5.709 -13.219 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.218 4.218 3 Si 0.878 3.122 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.491 4.491 8 H 0.074 0.926 9 N -0.317 5.317 10 C 0.036 3.964 11 C -0.211 4.211 12 C 0.012 3.988 13 N -0.301 5.301 14 C 0.394 3.606 15 O -0.398 6.398 16 C -0.136 4.136 17 O -0.057 6.057 18 C -0.033 4.033 19 N -0.212 5.212 20 C -0.019 4.019 21 C -0.025 4.025 22 C -0.066 4.066 23 C -0.145 4.145 24 C -0.128 4.128 25 C -0.154 4.154 26 C -0.105 4.105 27 C -0.047 4.047 28 C 0.016 3.984 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.269 0.731 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.169 -3.705 -13.685 14.778 hybrid contribution -0.183 -1.956 0.696 2.084 sum 3.986 -5.661 -12.989 14.719 Atomic orbital electron populations 1.70860 1.06687 1.30033 1.46836 1.25587 0.96116 1.01120 0.98975 0.83751 0.75369 0.76619 0.76474 1.21059 1.22189 1.21806 1.19845 1.03860 0.90918 1.34477 0.92572 1.43737 1.49935 1.01680 1.36349 1.20266 0.92499 0.87122 0.96531 1.21847 1.02185 1.01605 0.95480 1.20657 0.96803 0.87786 0.93554 1.47265 1.10267 1.32269 1.40291 1.16311 0.85900 0.79215 0.79178 1.90850 1.12046 1.69239 1.67618 1.23469 0.81860 1.04525 1.03774 1.84797 1.25445 1.45096 1.50412 1.28264 1.00446 0.88071 0.86520 1.70460 0.98622 1.24907 1.27240 1.20494 0.93928 0.93328 0.94184 1.17633 0.87847 1.03705 0.93315 1.21310 0.91513 0.93696 1.00131 1.21034 0.96543 1.01410 0.95507 1.21210 0.98852 0.99334 0.93419 1.20952 0.92381 1.02608 0.99462 1.21093 0.96956 0.98433 0.93989 1.22333 0.80562 1.01063 1.00711 1.22108 0.92000 0.97778 0.86479 0.92136 0.93413 0.95079 0.90957 0.92290 0.90003 0.91680 0.73064 0.85100 0.85842 0.86242 0.86072 0.86034 0.89876 0.91488 0.94847 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 12.71 55.49 0.71 -25.40 16 2 C -0.01 -0.41 4.40 -17.43 -0.08 -0.49 16 3 Si 1.05 25.67 30.03 -169.99 -5.10 20.56 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.36 -9.87 9.10 -15.06 -0.14 -10.01 16 8 H 0.06 1.59 8.01 -52.49 -0.42 1.17 16 9 N -0.59 -14.01 2.43 -171.79 -0.42 -14.43 16 10 C 0.16 3.24 5.63 -5.24 -0.03 3.21 16 11 C -0.17 -2.98 5.64 -29.13 -0.16 -3.15 16 12 C 0.13 2.12 5.68 -5.92 -0.03 2.08 16 13 N -0.57 -10.20 2.46 -178.08 -0.44 -10.64 16 14 C 0.61 11.67 7.61 -12.97 -0.10 11.57 16 15 O -0.52 -10.51 12.33 5.17 0.06 -10.44 16 16 C -0.08 -1.47 6.83 -36.17 -0.25 -1.72 16 17 O -0.17 -2.81 6.74 4.32 0.03 -2.78 16 18 C 0.19 2.62 13.16 52.14 0.69 3.31 16 19 N -0.48 -7.83 11.28 -11.03 -0.12 -7.95 16 20 C 0.10 1.84 6.63 -82.49 -0.55 1.29 16 21 C -0.02 -0.41 5.49 -104.92 -0.58 -0.98 16 22 C -0.05 -0.81 7.57 -39.22 -0.30 -1.11 16 23 C -0.13 -1.80 10.03 -39.63 -0.40 -2.19 16 24 C -0.11 -1.34 10.04 -39.50 -0.40 -1.74 16 25 C -0.14 -1.67 10.03 -39.63 -0.40 -2.06 16 26 C -0.09 -1.23 9.78 -39.21 -0.38 -1.62 16 27 C 0.08 1.35 4.85 -4.39 -0.02 1.33 16 28 C 0.14 3.08 5.03 -1.57 -0.01 3.07 16 29 H 0.27 7.70 6.57 -40.82 -0.27 7.43 16 30 H 0.05 0.98 8.02 -51.93 -0.42 0.57 16 31 H 0.03 0.55 7.59 -51.93 -0.39 0.16 16 32 H 0.07 1.53 7.91 -51.93 -0.41 1.12 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.29 7.17 -51.93 -0.37 0.92 16 35 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 36 H 0.25 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.13 2.51 6.75 -52.49 -0.35 2.15 16 38 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.08 1.33 4.86 -51.94 -0.25 1.08 16 43 H 0.07 1.01 7.73 -51.92 -0.40 0.61 16 44 H 0.03 0.74 7.26 -51.93 -0.38 0.37 16 45 H 0.07 1.77 6.24 -51.93 -0.32 1.44 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -32.88 361.39 -8.71 -41.58 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.74 Total: 3.25 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.13 Total: 0.80 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.27 Total: -58.43 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.10 Total: 20.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.88 -8.71 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981302952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.454 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds