Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99976 * 2 1 4 4 H 1.48494 * 109.47066 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.46678 * 240.00199 * 3 2 1 6 6 H 1.48495 * 109.47254 * 120.00270 * 3 2 1 7 7 C 1.38806 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00174 * 213.53122 * 7 2 1 9 9 N 1.36942 * 120.00025 * 33.52421 * 7 2 1 10 10 C 1.43463 * 118.94168 * 202.38714 * 9 7 2 11 11 C 1.53794 * 107.95645 * 273.61107 * 10 9 7 12 12 C 1.47139 * 111.84190 * 281.66278 * 11 10 9 13 13 N 1.48210 * 110.34006 * 58.29944 * 12 11 10 14 14 C 1.34779 * 119.97023 * 102.46874 * 13 12 11 15 15 O 1.21726 * 119.99903 * 355.71631 * 14 13 12 16 16 C 1.46401 * 120.00268 * 175.71393 * 14 13 12 17 17 O 1.35382 * 126.81423 * 5.15372 * 16 14 13 18 18 C 1.33661 * 107.95134 * 179.89531 * 17 16 14 19 19 N 1.30362 * 109.72755 * 0.37322 * 18 17 16 20 20 C 1.34544 * 109.01638 * 359.77258 * 19 18 17 21 21 C 1.48131 * 126.53357 * 180.02562 * 20 19 18 22 22 C 1.39468 * 120.13782 * 133.72078 * 21 20 19 23 23 C 1.37982 * 119.86438 * 179.67883 * 22 21 20 24 24 C 1.38352 * 120.13251 * 0.61415 * 23 22 21 25 25 C 1.38348 * 120.27017 * 359.67939 * 24 23 22 26 26 C 1.37983 * 120.13369 * 0.02562 * 25 24 23 27 27 C 1.43622 * 120.06420 * 282.49230 * 13 12 11 28 28 C 1.48853 * 118.93638 * 22.11509 * 9 7 2 29 29 H 0.96999 * 119.99932 * 180.88742 * 1 2 3 30 30 H 1.08999 * 109.76376 * 33.22183 * 10 9 7 31 31 H 1.08998 * 109.76576 * 153.94181 * 10 9 7 32 32 H 1.09005 * 109.01036 * 42.27473 * 11 10 9 33 33 H 1.09005 * 109.00834 * 161.05880 * 11 10 9 34 34 H 1.09002 * 109.32466 * 178.56446 * 12 11 10 35 35 H 1.08992 * 109.32881 * 298.20888 * 12 11 10 36 36 H 1.07994 * 125.13575 * 180.13887 * 18 17 16 37 37 H 1.07996 * 120.06830 * 359.97438 * 22 21 20 38 38 H 1.08001 * 119.93686 * 180.31521 * 23 22 21 39 39 H 1.07996 * 119.86366 * 179.70053 * 24 23 22 40 40 H 1.08002 * 119.93279 * 180.02562 * 25 24 23 41 41 H 1.07998 * 120.06564 * 180.02562 * 26 25 24 42 42 H 1.08992 * 108.87302 * 211.44518 * 27 13 12 43 43 H 1.09007 * 108.86835 * 329.88317 * 27 13 12 44 44 H 1.08996 * 109.48059 * 260.62458 * 28 9 7 45 45 H 1.08999 * 109.48370 * 20.66178 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6963 -1.2126 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 2.9554 -1.2797 0.5172 9 7 1.4964 -2.2897 -0.6540 10 6 1.9289 -3.6015 -0.2663 11 6 3.2140 -3.9268 -1.0460 12 6 2.9265 -4.3285 -2.4319 13 7 2.1887 -3.2539 -3.1373 14 6 2.8359 -2.4499 -4.0040 15 8 4.0399 -2.5551 -4.1491 16 6 2.0909 -1.4500 -4.7711 17 8 0.7766 -1.1487 -4.6502 18 6 0.4928 -0.1824 -5.5290 19 7 1.5655 0.1306 -6.2004 20 6 2.5896 -0.6281 -5.7692 21 6 3.9846 -0.5914 -6.2661 22 6 5.0487 -0.5700 -5.3648 23 6 6.3460 -0.5425 -5.8339 24 6 6.5921 -0.5234 -7.1952 25 6 5.5406 -0.5384 -8.0942 26 6 4.2390 -0.5720 -7.6373 27 6 0.7848 -3.0683 -2.8978 28 6 0.5025 -2.0730 -1.7406 29 1 -0.4850 -0.8399 0.0130 30 1 2.1325 -3.6210 0.8044 31 1 1.1558 -4.3309 -0.5077 32 1 3.8550 -3.0452 -1.0576 33 1 3.7388 -4.7388 -0.5426 34 1 3.8639 -4.5242 -2.9526 35 1 2.3210 -5.2347 -2.4266 36 1 -0.4791 0.2681 -5.6651 37 1 4.8577 -0.5796 -4.3019 38 1 7.1710 -0.5310 -5.1369 39 1 7.6091 -0.4971 -7.5575 40 1 5.7389 -0.5238 -9.1557 41 1 3.4191 -0.5841 -8.3401 42 1 0.3185 -2.6922 -3.8084 43 1 0.3395 -4.0312 -2.6476 44 1 -0.5025 -2.2378 -1.3522 45 1 0.5861 -1.0514 -2.1114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981302952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = 39.719133 kcal Electronic energy + Delta-G solvation = -31165.491409 eV Core-core repulsion = 27150.301416 eV Total energy + Delta-G solvation = -4015.189994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.46263 -41.16729 -39.98398 -38.78856 -36.52453 -35.96088 -34.52281 -32.99228 -32.61354 -31.85396 -30.53063 -29.25465 -27.20330 -25.62372 -25.50428 -24.42857 -23.81408 -22.97932 -22.10576 -21.54123 -20.77012 -19.45004 -18.81583 -18.25843 -17.91904 -17.51314 -17.28176 -16.63001 -16.32496 -16.00050 -15.89988 -15.86494 -15.56892 -15.15725 -15.05157 -14.69498 -14.48522 -14.32554 -14.18184 -13.97391 -13.77088 -13.70436 -12.95309 -12.88785 -12.63088 -12.60714 -12.26068 -12.16217 -12.10136 -12.03834 -11.91958 -11.89817 -11.75924 -11.44939 -11.29056 -10.46057 -10.32740 -9.84760 -9.79380 -9.38216 -8.90059 -8.36528 -5.30857 -0.52119 0.39050 0.50536 1.30761 1.39862 1.45039 1.51516 1.69592 1.92410 2.05910 2.54810 2.80862 2.98171 3.10596 3.41299 3.55564 3.60599 3.93361 4.04393 4.05075 4.08936 4.12462 4.20996 4.28653 4.32830 4.34768 4.43935 4.54355 4.60890 4.64717 4.69606 4.78216 4.91163 4.94267 4.98225 5.11362 5.11939 5.13529 5.18124 5.37331 5.51264 5.56229 5.58994 5.60401 5.85732 6.03986 6.16471 6.38469 6.43560 6.88764 7.09564 7.81031 8.18669 8.94974 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004713 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.476590 B = 5939.665168 C = 6342.875579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.056 4.056 3 Si 1.085 2.915 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.361 4.361 8 H 0.036 0.964 9 N -0.609 5.609 10 C 0.159 3.841 11 C -0.154 4.154 12 C 0.130 3.870 13 N -0.575 5.575 14 C 0.598 3.402 15 O -0.539 6.539 16 C -0.116 4.116 17 O -0.180 6.180 18 C 0.214 3.786 19 N -0.507 5.507 20 C 0.102 3.898 21 C -0.053 4.053 22 C -0.074 4.074 23 C -0.135 4.135 24 C -0.100 4.100 25 C -0.127 4.127 26 C -0.092 4.092 27 C 0.090 3.910 28 C 0.151 3.849 29 H 0.259 0.741 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.305 0.695 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.027 0.973 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 -6.700 -15.421 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.255 4.255 3 Si 0.912 3.088 4 H -0.209 1.209 5 H -0.230 1.230 6 H -0.202 1.202 7 C -0.491 4.491 8 H 0.054 0.946 9 N -0.333 5.333 10 C 0.032 3.968 11 C -0.195 4.195 12 C 0.010 3.990 13 N -0.304 5.304 14 C 0.386 3.614 15 O -0.420 6.420 16 C -0.172 4.172 17 O -0.067 6.067 18 C -0.011 4.011 19 N -0.234 5.234 20 C -0.021 4.021 21 C -0.054 4.054 22 C -0.093 4.093 23 C -0.153 4.153 24 C -0.118 4.118 25 C -0.145 4.145 26 C -0.110 4.110 27 C -0.035 4.035 28 C 0.025 3.975 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.320 0.680 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.044 0.956 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.520 -4.731 -15.879 17.174 hybrid contribution -0.247 -1.636 1.337 2.127 sum 4.273 -6.367 -14.542 16.440 Atomic orbital electron populations 1.70934 1.07064 1.29458 1.49151 1.26421 0.96342 1.03326 0.99450 0.83211 0.74604 0.74331 0.76629 1.20914 1.22969 1.20172 1.19930 1.02805 0.92510 1.33869 0.94563 1.43931 1.50211 1.02197 1.36925 1.20445 0.94151 0.86070 0.96107 1.21647 1.00245 1.00785 0.96818 1.20826 0.97706 0.88545 0.91957 1.47412 1.10541 1.32378 1.40086 1.16573 0.85900 0.79463 0.79466 1.90822 1.12875 1.69893 1.68393 1.23350 0.82757 1.05905 1.05141 1.84756 1.24685 1.46029 1.51210 1.29510 1.01545 0.85982 0.84039 1.70492 0.99046 1.25461 1.28403 1.20833 0.94712 0.92797 0.93720 1.17857 0.87432 1.05469 0.94606 1.21140 0.93262 0.96381 0.98486 1.21273 0.95614 1.01201 0.97213 1.21636 1.00844 0.97142 0.92202 1.21417 0.91261 1.00340 1.01447 1.21308 0.98547 0.98291 0.92877 1.22185 0.80652 1.01279 0.99355 1.21959 0.91076 0.97217 0.87260 0.93051 0.94812 0.92113 0.95507 0.88991 0.89977 0.87671 0.68041 0.88775 0.84593 0.82419 0.82269 0.85037 0.88524 0.88281 0.95564 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.63 12.71 21.65 0.28 -54.35 16 2 C -0.06 -3.21 4.40 84.86 0.37 -2.84 16 3 Si 1.08 53.52 30.03 68.60 2.06 55.58 16 4 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.36 -20.34 9.10 84.03 0.76 -19.58 16 8 H 0.04 2.14 8.01 -2.91 -0.02 2.12 16 9 N -0.61 -29.19 2.43 -697.42 -1.69 -30.88 16 10 C 0.16 6.19 5.63 87.21 0.49 6.68 16 11 C -0.15 -5.30 5.64 29.04 0.16 -5.13 16 12 C 0.13 3.93 5.68 84.23 0.48 4.40 16 13 N -0.57 -20.30 2.46 -835.54 -2.06 -22.35 16 14 C 0.60 23.68 7.61 86.37 0.66 24.34 16 15 O -0.54 -22.90 12.33 -4.43 -0.05 -22.96 16 16 C -0.12 -4.36 6.83 24.48 0.17 -4.20 16 17 O -0.18 -5.88 6.74 -7.47 -0.05 -5.93 16 18 C 0.21 5.60 13.16 130.46 1.72 7.32 16 19 N -0.51 -16.24 11.28 -303.70 -3.43 -19.67 16 20 C 0.10 3.71 6.63 41.44 0.27 3.99 16 21 C -0.05 -1.83 5.49 -20.05 -0.11 -1.94 16 22 C -0.07 -2.63 7.57 22.51 0.17 -2.46 16 23 C -0.14 -3.79 10.03 22.24 0.22 -3.57 16 24 C -0.10 -2.18 10.04 22.32 0.22 -1.96 16 25 C -0.13 -2.74 10.03 22.24 0.22 -2.52 16 26 C -0.09 -2.53 9.78 22.51 0.22 -2.31 16 27 C 0.09 3.00 4.85 87.67 0.42 3.42 16 28 C 0.15 6.58 5.03 86.69 0.44 7.02 16 29 H 0.26 15.30 6.57 -92.71 -0.61 14.69 16 30 H 0.03 1.39 8.02 -2.39 -0.02 1.37 16 31 H 0.06 2.01 7.59 -2.39 -0.02 1.99 16 32 H 0.03 1.15 7.91 -2.38 -0.02 1.13 16 33 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.08 2.52 7.17 -2.39 -0.02 2.50 16 35 H 0.11 2.39 8.05 -2.39 -0.02 2.37 16 36 H 0.30 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.09 3.97 6.75 -2.91 -0.02 3.95 16 38 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 39 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 42 H 0.10 3.00 4.86 -2.42 -0.01 2.99 16 43 H 0.10 2.67 7.73 -2.38 -0.02 2.66 16 44 H 0.03 1.18 7.26 -2.39 -0.02 1.16 16 45 H 0.03 1.74 6.24 -2.39 -0.01 1.73 16 Total: -1.00 -76.59 361.39 3.13 -73.46 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.18 Total: 16.43 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.90 Total: 10.67 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -6.90 Total: -127.26 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.10 Total: -28.89 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 2.06 Total: 55.58 kcal Total: -76.59 3.13 -73.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981302952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.183 kcal (2) G-P(sol) polarization free energy of solvation -76.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds