Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00503 * 2 1 4 4 H 1.48511 * 109.47326 * 85.25205 * 3 2 1 5 5 H 1.48505 * 109.47135 * 325.25526 * 3 2 1 6 6 H 1.48497 * 109.47440 * 205.25425 * 3 2 1 7 7 C 1.38818 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99604 * 196.43939 * 7 2 1 9 9 N 1.36927 * 120.00005 * 16.43282 * 7 2 1 10 10 C 1.43462 * 118.94137 * 205.55874 * 9 7 2 11 11 C 1.53797 * 107.96224 * 273.61314 * 10 9 7 12 12 C 1.47142 * 111.83604 * 281.66546 * 11 10 9 13 13 N 1.48207 * 110.34641 * 58.30022 * 12 11 10 14 14 C 1.34779 * 119.97394 * 102.46161 * 13 12 11 15 15 O 1.21548 * 119.99999 * 358.32694 * 14 13 12 16 16 C 1.47922 * 119.99828 * 178.32401 * 14 13 12 17 17 C 1.38259 * 119.23990 * 187.45854 * 16 14 13 18 18 C 1.40697 * 118.64770 * 179.71710 * 17 16 14 19 19 C 1.40240 * 122.05353 * 180.29074 * 18 17 16 20 20 C 1.36316 * 119.48155 * 180.24806 * 19 18 17 21 21 C 1.39253 * 120.94371 * 0.03282 * 20 19 18 22 22 C 1.36364 * 121.05716 * 359.94893 * 21 20 19 23 23 C 1.40039 * 119.58973 * 0.04620 * 22 21 20 24 24 C 1.41349 * 121.85290 * 179.97438 * 23 22 21 25 25 O 1.35494 * 119.95382 * 359.97438 * 24 23 22 26 26 N 1.31388 * 120.09902 * 179.97438 * 24 23 22 27 27 C 1.43623 * 120.05857 * 282.49005 * 13 12 11 28 28 C 1.48857 * 118.94091 * 25.28968 * 9 7 2 29 29 H 0.97001 * 119.99341 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.76291 * 33.23256 * 10 9 7 31 31 H 1.09004 * 109.76285 * 153.94229 * 10 9 7 32 32 H 1.09003 * 109.00587 * 42.26895 * 11 10 9 33 33 H 1.08994 * 109.00775 * 161.06044 * 11 10 9 34 34 H 1.09005 * 109.31888 * 178.56189 * 12 11 10 35 35 H 1.08994 * 109.32944 * 298.20157 * 12 11 10 36 36 H 1.08005 * 120.67839 * 359.97438 * 17 16 14 37 37 H 1.07995 * 120.26139 * 0.28331 * 19 18 17 38 38 H 1.07998 * 119.52964 * 180.02562 * 20 19 18 39 39 H 1.08000 * 119.46773 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.20485 * 180.02562 * 22 21 20 41 41 H 0.96706 * 113.99807 * 269.97938 * 25 24 23 42 42 H 1.08993 * 108.87434 * 211.44566 * 27 13 12 43 43 H 1.09003 * 108.87042 * 329.87871 * 27 13 12 44 44 H 1.09000 * 109.48138 * 260.62501 * 28 9 7 45 45 H 1.09003 * 109.48013 * 20.65756 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3975 2.1043 1.3954 5 1 1.5016 2.6216 -0.7980 6 1 3.5944 1.4131 -0.5973 7 6 2.0102 -1.2022 0.0005 8 1 3.0571 -1.2212 0.2652 9 7 1.3675 -2.3640 -0.3344 10 6 1.8697 -3.6072 0.1758 11 6 2.9602 -4.1086 -0.7859 12 6 2.3850 -4.7271 -1.9908 13 7 1.5169 -3.7593 -2.7024 14 6 1.9676 -3.1385 -3.8105 15 8 3.0965 -3.3494 -4.2086 16 6 1.0884 -2.2006 -4.5422 17 6 1.5063 -1.6924 -5.7582 18 6 0.6576 -0.8060 -6.4463 19 6 1.0071 -0.2529 -7.6868 20 6 0.1468 0.6046 -8.3053 21 6 -1.0729 0.9393 -7.7228 22 6 -1.4434 0.4191 -6.5180 23 6 -0.5850 -0.4654 -5.8533 24 6 -0.9205 -1.0323 -4.6027 25 8 -2.1012 -0.7228 -4.0145 26 7 -0.0891 -1.8589 -4.0096 27 6 0.1958 -3.4820 -2.2118 28 6 0.1665 -2.2957 -1.2113 29 1 -0.4849 0.8401 -0.0004 30 1 2.2951 -3.4536 1.1676 31 1 1.0615 -4.3366 0.2305 32 1 3.5858 -3.2670 -1.0830 33 1 3.5778 -4.8437 -0.2699 34 1 3.1907 -5.0437 -2.6532 35 1 1.7926 -5.5954 -1.7029 36 1 2.4630 -1.9733 -6.1734 37 1 1.9503 -0.5049 -8.1486 38 1 0.4150 1.0307 -9.2608 39 1 -1.7363 1.6215 -8.2337 40 1 -2.3929 0.6878 -6.0789 41 1 -2.0603 0.0480 -3.4319 42 1 -0.4519 -3.2474 -3.0564 43 1 -0.1884 -4.3711 -1.7116 44 1 -0.7339 -2.3539 -0.5997 45 1 0.1717 -1.3552 -1.7623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981333124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = 40.261356 kcal Electronic energy + Delta-G solvation = -31096.543271 eV Core-core repulsion = 27081.376790 eV Total energy + Delta-G solvation = -4015.166481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13620 -39.52564 -37.85376 -37.04067 -36.36049 -34.19099 -32.75180 -32.20519 -31.18362 -30.68126 -29.46515 -27.42875 -25.71170 -24.35861 -24.03497 -23.48489 -22.13995 -21.96310 -19.70700 -19.61195 -18.16617 -17.79199 -17.67289 -16.54876 -16.26163 -15.76026 -15.69557 -15.34557 -14.87740 -14.51708 -14.40239 -14.04898 -13.96180 -13.69244 -13.43092 -13.24287 -13.06542 -12.83969 -12.45423 -12.16053 -12.08406 -11.89218 -11.77354 -11.38967 -11.33331 -11.21829 -10.95389 -10.71378 -10.49052 -10.19457 -10.13099 -10.04198 -9.85993 -9.71200 -9.56086 -9.18562 -8.69137 -8.35557 -8.10041 -7.81095 -6.59446 -5.72919 -3.12775 0.19264 0.67178 1.76067 2.56670 3.35300 3.36142 3.43376 3.48544 3.49025 3.68162 4.13174 4.46377 4.53579 4.54894 4.68381 4.74357 4.98678 5.05730 5.13938 5.38792 5.40424 5.55604 5.62679 5.67184 5.70105 5.81585 5.83619 5.84122 5.91789 6.02986 6.23165 6.25195 6.31355 6.37022 6.42855 6.54915 6.63992 6.65058 6.84284 6.89786 7.05654 7.15546 7.57576 7.59630 7.73302 7.84949 7.90471 8.09903 8.52426 8.64607 9.29093 9.98130 10.43769 11.34227 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010638 B = 0.005052 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.438342 B = 5541.185885 C = 6722.615877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.061 0.939 9 N -0.594 5.594 10 C 0.162 3.838 11 C -0.169 4.169 12 C 0.127 3.873 13 N -0.559 5.559 14 C 0.571 3.429 15 O -0.554 6.554 16 C 0.095 3.905 17 C -0.105 4.105 18 C -0.021 4.021 19 C -0.106 4.106 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.079 4.079 23 C -0.111 4.111 24 C 0.352 3.648 25 O -0.474 6.474 26 N -0.454 5.454 27 C 0.063 3.937 28 C 0.178 3.822 29 H 0.249 0.751 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.152 0.848 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.411 0.589 42 H 0.117 0.883 43 H 0.043 0.957 44 H 0.034 0.966 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 -1.873 -14.599 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.721 3.279 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.079 0.921 9 N -0.315 5.315 10 C 0.033 3.967 11 C -0.211 4.211 12 C 0.006 3.994 13 N -0.287 5.287 14 C 0.357 3.643 15 O -0.433 6.433 16 C -0.031 4.031 17 C -0.126 4.126 18 C -0.025 4.025 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.098 4.098 23 C -0.114 4.114 24 C 0.158 3.842 25 O -0.283 6.283 26 N -0.175 5.175 27 C -0.062 4.062 28 C 0.053 3.947 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.170 0.830 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.271 0.729 42 H 0.133 0.867 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.715 -2.766 -14.249 14.983 hybrid contribution 0.736 1.831 -0.214 1.985 sum -2.979 -0.934 -14.464 14.797 Atomic orbital electron populations 1.70077 1.04931 1.24814 1.55128 1.24893 0.95219 0.97873 1.01361 0.86446 0.79489 0.84357 0.77578 1.21501 1.21757 1.20635 1.19159 0.92507 0.85328 1.40629 0.92120 1.43798 1.32070 1.01588 1.54070 1.20272 0.93514 0.88594 0.94304 1.21868 1.01081 1.00715 0.97400 1.20635 0.94177 0.90353 0.94254 1.47288 1.16508 1.40751 1.24148 1.17729 0.85687 0.79993 0.80855 1.90713 1.18783 1.64729 1.69116 1.20690 0.91065 0.98142 0.93164 1.22099 1.00355 0.95819 0.94366 1.18034 0.93012 0.96384 0.95102 1.21001 1.00172 0.97344 0.93868 1.20984 0.94004 0.97062 0.99916 1.20957 0.96916 1.00295 0.95839 1.20973 0.99029 0.95040 0.94797 1.19108 0.95535 0.99898 0.96896 1.19410 0.85517 0.90929 0.88342 1.84620 1.25212 1.53637 1.64810 1.67667 1.02724 1.13242 1.33877 1.22964 0.82703 0.99317 1.01174 1.21841 0.88055 0.95849 0.88999 0.94069 0.93805 0.94882 0.91369 0.92635 0.90497 0.91922 0.83002 0.84752 0.85491 0.85521 0.84508 0.72922 0.86659 0.93823 0.94793 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.04 55.49 0.61 -24.77 16 2 C 0.00 0.12 4.89 -17.43 -0.09 0.03 16 3 Si 0.89 22.11 29.58 -169.99 -5.03 17.08 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -6.84 9.26 -15.06 -0.14 -6.98 16 8 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.85 2.53 -171.78 -0.43 -15.29 16 10 C 0.16 3.43 5.63 -5.24 -0.03 3.40 16 11 C -0.17 -3.22 5.64 -29.13 -0.16 -3.38 16 12 C 0.13 2.26 5.69 -5.92 -0.03 2.23 16 13 N -0.56 -11.06 2.46 -177.52 -0.44 -11.49 16 14 C 0.57 11.75 7.64 -12.29 -0.09 11.65 16 15 O -0.55 -12.17 15.74 5.32 0.08 -12.09 16 16 C 0.09 1.77 6.59 -83.09 -0.55 1.22 16 17 C -0.11 -1.67 9.40 -38.65 -0.36 -2.04 16 18 C -0.02 -0.29 5.74 -106.84 -0.61 -0.90 16 19 C -0.11 -1.15 9.81 -39.52 -0.39 -1.54 16 20 C -0.10 -0.92 9.95 -39.90 -0.40 -1.32 16 21 C -0.12 -1.13 9.95 -39.88 -0.40 -1.53 16 22 C -0.08 -0.88 9.58 -39.58 -0.38 -1.26 16 23 C -0.11 -1.56 5.76 -106.67 -0.61 -2.17 16 24 C 0.35 5.61 7.80 -16.56 -0.13 5.48 16 25 O -0.47 -6.67 12.83 -18.17 -0.23 -6.90 16 26 N -0.45 -8.34 4.49 -9.60 -0.04 -8.38 16 27 C 0.06 1.25 4.78 -4.39 -0.02 1.23 16 28 C 0.18 4.20 4.95 -1.56 -0.01 4.19 16 29 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.04 0.94 8.02 -51.93 -0.42 0.53 16 31 H 0.03 0.65 7.59 -51.93 -0.39 0.26 16 32 H 0.07 1.53 7.91 -51.93 -0.41 1.12 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.35 7.14 -51.93 -0.37 0.98 16 35 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.15 2.23 7.61 -52.48 -0.40 1.83 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.14 1.28 7.65 -52.49 -0.40 0.87 16 41 H 0.41 4.64 9.06 45.56 0.41 5.05 16 42 H 0.12 2.23 4.80 -64.87 -0.31 1.92 16 43 H 0.04 0.80 7.73 -51.93 -0.40 0.40 16 44 H 0.03 0.87 8.00 -51.93 -0.42 0.45 16 45 H 0.08 2.15 5.30 -51.93 -0.28 1.88 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -33.24 360.42 -9.49 -42.73 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.04 Total: 5.37 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -4.40 Total: 8.31 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.30 Total: -59.93 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.15 Total: -18.99 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.24 -9.49 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981333124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.990 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds