Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47389 * 85.09750 * 3 2 1 5 5 H 1.48503 * 109.47322 * 325.09576 * 3 2 1 6 6 H 1.48504 * 109.47393 * 205.09814 * 3 2 1 7 7 C 1.38810 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99585 * 23.52738 * 7 2 1 9 9 N 1.36934 * 120.00058 * 203.51924 * 7 2 1 10 10 C 1.43460 * 118.94125 * 205.22530 * 9 7 2 11 11 C 1.53248 * 108.26385 * 273.78276 * 10 9 7 12 12 C 1.47139 * 111.81052 * 281.67550 * 11 10 9 13 13 N 1.48215 * 110.34493 * 58.22652 * 12 11 10 14 14 C 1.34774 * 119.97040 * 102.45909 * 13 12 11 15 15 O 1.21589 * 120.00195 * 185.82193 * 14 13 12 16 16 C 1.47591 * 120.00113 * 5.82439 * 14 13 12 17 17 C 1.39816 * 119.99657 * 322.54561 * 16 14 13 18 18 C 1.36582 * 119.99530 * 179.72219 * 17 16 14 19 19 C 1.39813 * 120.00090 * 0.57328 * 18 17 16 20 20 C 1.47586 * 119.99645 * 179.72324 * 19 18 17 21 21 C 1.35947 * 126.60119 * 359.68529 * 20 19 18 22 22 N 1.34036 * 107.49341 * 179.87759 * 21 20 19 23 23 C 1.30420 * 108.92993 * 0.40060 * 22 21 20 24 24 O 1.33940 * 109.06327 * 359.74904 * 23 22 21 25 25 C 1.39798 * 119.99989 * 359.70265 * 19 18 17 26 26 C 1.36583 * 120.00172 * 359.97438 * 25 19 18 27 27 C 1.43623 * 120.06005 * 282.48710 * 13 12 11 28 28 C 1.48859 * 118.94150 * 25.49524 * 9 7 2 29 29 H 0.97002 * 119.99782 * 185.11861 * 1 2 3 30 30 H 1.08995 * 109.76413 * 33.24905 * 10 9 7 31 31 H 1.08996 * 109.76399 * 154.01416 * 10 9 7 32 32 H 1.09001 * 109.07223 * 161.04254 * 11 10 9 33 33 H 1.08992 * 108.90244 * 42.19592 * 11 10 9 34 34 H 1.08999 * 109.32908 * 297.96213 * 12 11 10 35 35 H 1.09000 * 109.18147 * 178.40197 * 12 11 10 36 36 H 1.07997 * 120.00273 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.00426 * 180.31965 * 18 17 16 38 38 H 1.07993 * 126.25023 * 0.02562 * 21 20 19 39 39 H 1.07994 * 125.46615 * 179.73338 * 23 22 21 40 40 H 1.08004 * 120.00022 * 180.02562 * 25 19 18 41 41 H 1.08006 * 120.00015 * 180.02562 * 26 25 19 42 42 H 1.08997 * 108.87125 * 329.88925 * 27 13 12 43 43 H 1.08997 * 108.87132 * 211.44506 * 27 13 12 44 44 H 1.08999 * 109.47998 * 260.60514 * 28 9 7 45 45 H 1.09003 * 109.47742 * 20.62217 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3941 2.1063 1.3949 5 1 1.5033 2.6205 -0.8011 6 1 3.5957 1.4125 -0.5939 7 6 2.0103 -1.2021 0.0005 8 1 1.5376 -2.0987 -0.3724 9 7 3.2943 -1.2512 0.4738 10 6 4.1711 -2.2817 -0.0030 11 6 3.9624 -3.5286 0.8632 12 6 4.6506 -3.4156 2.1588 13 7 4.1691 -2.2233 2.8958 14 6 3.2915 -2.3668 3.9086 15 8 2.8150 -1.3846 4.4440 16 6 2.9089 -3.7163 4.3678 17 6 2.7505 -4.7512 3.4412 18 6 2.4019 -6.0014 3.8668 19 6 2.1918 -6.2432 5.2277 20 6 1.8092 -7.5927 5.6868 21 6 1.6194 -8.6904 4.9077 22 7 1.2855 -9.7058 5.7165 23 6 1.2556 -9.2743 6.9469 24 8 1.5743 -7.9734 6.9622 25 6 2.3446 -5.2070 6.1536 26 6 2.6996 -3.9584 5.7287 27 6 4.6363 -0.9150 2.5314 28 6 3.7337 -0.2371 1.4710 29 1 -0.4850 -0.8367 0.0749 30 1 3.9342 -2.5161 -1.0408 31 1 5.2063 -1.9495 0.0734 32 1 4.3463 -4.3996 0.3320 33 1 2.8950 -3.6620 1.0387 34 1 5.7239 -3.3264 1.9906 35 1 4.4511 -4.3097 2.7495 36 1 2.9077 -4.5631 2.3894 37 1 2.2846 -6.8022 3.1516 38 1 1.7215 -8.7366 3.8336 39 1 1.0127 -9.8702 7.8142 40 1 2.1827 -5.3940 7.2049 41 1 2.8180 -3.1579 6.4441 42 1 5.6468 -1.0002 2.1316 43 1 4.6635 -0.2892 3.4234 44 1 4.2939 0.5500 0.9664 45 1 2.8601 0.1945 1.9596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981461454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = 76.089216 kcal Electronic energy + Delta-G solvation = -29925.552109 eV Core-core repulsion = 25911.939241 eV Total energy + Delta-G solvation = -4013.612868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.59993 -40.67484 -38.69301 -37.22626 -35.12002 -34.73082 -33.12099 -32.47764 -31.71130 -31.07883 -29.25093 -27.74974 -26.00066 -24.74168 -23.65003 -23.01779 -22.57879 -21.98281 -21.44487 -19.95302 -19.31502 -18.36032 -17.43333 -17.14632 -16.90326 -16.74262 -16.00481 -15.61010 -15.36652 -14.72041 -14.56921 -14.49040 -14.25002 -13.92129 -13.78939 -13.57348 -13.38465 -13.24559 -13.03455 -12.84204 -12.37295 -12.20179 -12.06464 -11.73946 -11.55114 -11.31047 -11.09760 -10.95459 -10.91293 -10.75691 -10.33529 -10.11426 -9.96213 -9.73490 -9.54551 -9.21502 -9.15802 -8.50489 -8.37474 -8.21716 -6.96083 -6.29679 -3.28023 0.16762 1.19364 1.51068 2.32076 2.37521 2.98573 3.27890 3.48057 3.55740 3.67029 3.70314 3.87058 4.28915 4.52357 4.63270 4.64929 4.66250 4.71173 4.92084 5.01791 5.10164 5.13899 5.30382 5.40553 5.43561 5.44498 5.52852 5.57627 5.62736 5.75557 5.81458 5.89891 5.93524 6.02897 6.07006 6.11792 6.16102 6.17266 6.25488 6.39625 6.55685 6.59796 6.71370 6.75380 7.01111 7.32193 7.64553 8.05268 8.45077 8.49252 9.04703 9.69053 10.15689 11.14967 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.002907 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.410974 B = 9631.089824 C = 9765.995562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 1.052 2.948 4 H -0.294 1.294 5 H -0.301 1.301 6 H -0.286 1.286 7 C -0.352 4.352 8 H 0.065 0.935 9 N -0.598 5.598 10 C 0.164 3.836 11 C -0.181 4.181 12 C 0.100 3.900 13 N -0.578 5.578 14 C 0.556 3.444 15 O -0.530 6.530 16 C -0.105 4.105 17 C -0.098 4.098 18 C -0.101 4.101 19 C -0.006 4.006 20 C 0.002 3.998 21 C -0.022 4.022 22 N -0.486 5.486 23 C 0.170 3.830 24 O -0.198 6.198 25 C -0.106 4.106 26 C -0.065 4.065 27 C 0.103 3.897 28 C 0.106 3.894 29 H 0.264 0.736 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.159 0.841 37 H 0.135 0.865 38 H 0.188 0.812 39 H 0.251 0.749 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 -16.262 11.619 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.209 4.209 3 Si 0.884 3.116 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.212 1.212 7 C -0.481 4.481 8 H 0.083 0.917 9 N -0.320 5.320 10 C 0.036 3.964 11 C -0.222 4.222 12 C -0.021 4.021 13 N -0.309 5.309 14 C 0.344 3.656 15 O -0.408 6.408 16 C -0.108 4.108 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.007 4.007 20 C -0.051 4.051 21 C -0.161 4.161 22 N -0.214 5.214 23 C -0.055 4.055 24 O -0.084 6.084 25 C -0.124 4.124 26 C -0.084 4.084 27 C -0.022 4.022 28 C -0.020 4.020 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.176 0.824 37 H 0.152 0.848 38 H 0.205 0.795 39 H 0.267 0.733 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.714 -14.678 11.681 21.124 hybrid contribution 0.139 -1.182 0.286 1.224 sum 9.852 -15.860 11.967 22.177 Atomic orbital electron populations 1.70853 1.06495 1.29532 1.48415 1.26112 0.96334 1.01013 0.97412 0.84022 0.74760 0.76751 0.76107 1.22149 1.22907 1.21247 1.20132 0.88947 0.95990 1.42983 0.91729 1.43924 1.10972 1.32082 1.45056 1.20150 0.92978 0.87679 0.95614 1.21947 1.01890 1.01559 0.96790 1.21318 0.98682 0.88270 0.93861 1.47215 1.44213 1.07556 1.31906 1.18144 0.79036 0.88383 0.80059 1.90800 1.52307 1.39854 1.57818 1.20200 1.02094 0.94033 0.94451 1.21813 0.96402 0.91610 1.01746 1.20747 0.99924 0.97776 0.93447 1.17769 1.01406 0.87847 0.93710 1.21509 1.06326 0.96042 0.81225 1.23386 1.04033 0.87503 1.01210 1.70345 1.17728 1.32019 1.01292 1.28158 0.99684 0.79496 0.98124 1.84477 1.65927 1.28169 1.29836 1.20907 0.99721 0.92149 0.99616 1.20886 0.96070 0.96824 0.94630 1.21661 0.97258 0.83944 0.99351 1.22543 0.98121 0.91814 0.89548 0.92661 0.92896 0.94555 0.91737 0.90730 0.91263 0.89285 0.82355 0.84751 0.79484 0.73285 0.84973 0.84511 0.91496 0.90527 0.94473 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.86 13.70 55.49 0.76 -28.10 16 2 C -0.01 -0.20 5.12 -17.43 -0.09 -0.29 16 3 Si 1.05 26.70 24.48 -169.99 -4.16 22.54 16 4 H -0.29 -7.26 6.81 56.52 0.38 -6.88 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.29 -6.75 6.48 56.52 0.37 -6.39 16 7 C -0.35 -9.71 9.53 -15.06 -0.14 -9.86 16 8 H 0.06 1.90 8.06 -52.49 -0.42 1.48 16 9 N -0.60 -13.71 2.33 -172.35 -0.40 -14.11 16 10 C 0.16 2.98 5.59 -5.52 -0.03 2.95 16 11 C -0.18 -2.68 4.87 -29.42 -0.14 -2.82 16 12 C 0.10 1.32 5.04 -5.91 -0.03 1.29 16 13 N -0.58 -9.74 2.46 -177.87 -0.44 -10.17 16 14 C 0.56 10.31 7.34 -12.45 -0.09 10.22 16 15 O -0.53 -11.89 16.47 5.29 0.09 -11.80 16 16 C -0.10 -1.58 5.40 -104.91 -0.57 -2.15 16 17 C -0.10 -1.28 7.27 -39.59 -0.29 -1.56 16 18 C -0.10 -1.10 9.51 -39.59 -0.38 -1.48 16 19 C -0.01 -0.07 5.88 -104.91 -0.62 -0.69 16 20 C 0.00 0.02 7.06 -36.59 -0.26 -0.24 16 21 C -0.02 -0.22 11.29 -17.41 -0.20 -0.41 16 22 N -0.49 -5.10 11.27 -14.67 -0.17 -5.26 16 23 C 0.17 1.34 13.21 52.16 0.69 2.03 16 24 O -0.20 -1.96 10.57 4.27 0.05 -1.92 16 25 C -0.11 -1.21 9.67 -39.60 -0.38 -1.60 16 26 C -0.07 -0.86 9.56 -39.59 -0.38 -1.24 16 27 C 0.10 1.80 5.21 -4.58 -0.02 1.77 16 28 C 0.11 2.30 4.54 -1.75 -0.01 2.29 16 29 H 0.26 8.27 8.73 -40.82 -0.36 7.92 16 30 H 0.05 0.99 8.02 -51.93 -0.42 0.58 16 31 H 0.04 0.58 7.58 -51.93 -0.39 0.19 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.32 6.27 -51.93 -0.33 0.99 16 34 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.09 1.02 4.27 -51.93 -0.22 0.80 16 36 H 0.16 2.09 3.24 -52.49 -0.17 1.92 16 37 H 0.13 1.09 7.02 -52.48 -0.37 0.72 16 38 H 0.19 1.46 7.29 -52.49 -0.38 1.07 16 39 H 0.25 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 1.27 7.93 -52.48 -0.42 0.86 16 41 H 0.14 1.73 8.02 -52.48 -0.42 1.31 16 42 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 43 H 0.08 1.33 7.46 -51.93 -0.39 0.94 16 44 H 0.04 0.79 5.83 -51.93 -0.30 0.49 16 45 H 0.08 1.95 5.69 -51.93 -0.30 1.65 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -36.27 355.14 -7.25 -43.52 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.39 Total: 1.73 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.93 Total: -1.78 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.24 Total: -57.65 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.13 Total: -13.72 kcal Atomic # 14 Polarization: 26.70 SS G_CDS: -4.16 Total: 22.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.27 -7.25 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981461454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.605 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds