Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47389 * 85.09750 * 3 2 1 5 5 H 1.48503 * 109.47322 * 325.09576 * 3 2 1 6 6 H 1.48504 * 109.47393 * 205.09814 * 3 2 1 7 7 C 1.38810 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99585 * 23.52738 * 7 2 1 9 9 N 1.36934 * 120.00058 * 203.51924 * 7 2 1 10 10 C 1.43460 * 118.94125 * 205.22530 * 9 7 2 11 11 C 1.53248 * 108.26385 * 273.78276 * 10 9 7 12 12 C 1.47139 * 111.81052 * 281.67550 * 11 10 9 13 13 N 1.48215 * 110.34493 * 58.22652 * 12 11 10 14 14 C 1.34774 * 119.97040 * 102.45909 * 13 12 11 15 15 O 1.21589 * 120.00195 * 185.82193 * 14 13 12 16 16 C 1.47591 * 120.00113 * 5.82439 * 14 13 12 17 17 C 1.39816 * 119.99657 * 322.54561 * 16 14 13 18 18 C 1.36582 * 119.99530 * 179.72219 * 17 16 14 19 19 C 1.39813 * 120.00090 * 0.57328 * 18 17 16 20 20 C 1.47586 * 119.99645 * 179.72324 * 19 18 17 21 21 C 1.35947 * 126.60119 * 359.68529 * 20 19 18 22 22 N 1.34036 * 107.49341 * 179.87759 * 21 20 19 23 23 C 1.30420 * 108.92993 * 0.40060 * 22 21 20 24 24 O 1.33940 * 109.06327 * 359.74904 * 23 22 21 25 25 C 1.39798 * 119.99989 * 359.70265 * 19 18 17 26 26 C 1.36583 * 120.00172 * 359.97438 * 25 19 18 27 27 C 1.43623 * 120.06005 * 282.48710 * 13 12 11 28 28 C 1.48859 * 118.94150 * 25.49524 * 9 7 2 29 29 H 0.97002 * 119.99782 * 185.11861 * 1 2 3 30 30 H 1.08995 * 109.76413 * 33.24905 * 10 9 7 31 31 H 1.08996 * 109.76399 * 154.01416 * 10 9 7 32 32 H 1.09001 * 109.07223 * 161.04254 * 11 10 9 33 33 H 1.08992 * 108.90244 * 42.19592 * 11 10 9 34 34 H 1.08999 * 109.32908 * 297.96213 * 12 11 10 35 35 H 1.09000 * 109.18147 * 178.40197 * 12 11 10 36 36 H 1.07997 * 120.00273 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.00426 * 180.31965 * 18 17 16 38 38 H 1.07993 * 126.25023 * 0.02562 * 21 20 19 39 39 H 1.07994 * 125.46615 * 179.73338 * 23 22 21 40 40 H 1.08004 * 120.00022 * 180.02562 * 25 19 18 41 41 H 1.08006 * 120.00015 * 180.02562 * 26 25 19 42 42 H 1.08997 * 108.87125 * 329.88925 * 27 13 12 43 43 H 1.08997 * 108.87132 * 211.44506 * 27 13 12 44 44 H 1.08999 * 109.47998 * 260.60514 * 28 9 7 45 45 H 1.09003 * 109.47742 * 20.62217 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3941 2.1063 1.3949 5 1 1.5033 2.6205 -0.8011 6 1 3.5957 1.4125 -0.5939 7 6 2.0103 -1.2021 0.0005 8 1 1.5376 -2.0987 -0.3724 9 7 3.2943 -1.2512 0.4738 10 6 4.1711 -2.2817 -0.0030 11 6 3.9624 -3.5286 0.8632 12 6 4.6506 -3.4156 2.1588 13 7 4.1691 -2.2233 2.8958 14 6 3.2915 -2.3668 3.9086 15 8 2.8150 -1.3846 4.4440 16 6 2.9089 -3.7163 4.3678 17 6 2.7505 -4.7512 3.4412 18 6 2.4019 -6.0014 3.8668 19 6 2.1918 -6.2432 5.2277 20 6 1.8092 -7.5927 5.6868 21 6 1.6194 -8.6904 4.9077 22 7 1.2855 -9.7058 5.7165 23 6 1.2556 -9.2743 6.9469 24 8 1.5743 -7.9734 6.9622 25 6 2.3446 -5.2070 6.1536 26 6 2.6996 -3.9584 5.7287 27 6 4.6363 -0.9150 2.5314 28 6 3.7337 -0.2371 1.4710 29 1 -0.4850 -0.8367 0.0749 30 1 3.9342 -2.5161 -1.0408 31 1 5.2063 -1.9495 0.0734 32 1 4.3463 -4.3996 0.3320 33 1 2.8950 -3.6620 1.0387 34 1 5.7239 -3.3264 1.9906 35 1 4.4511 -4.3097 2.7495 36 1 2.9077 -4.5631 2.3894 37 1 2.2846 -6.8022 3.1516 38 1 1.7215 -8.7366 3.8336 39 1 1.0127 -9.8702 7.8142 40 1 2.1827 -5.3940 7.2049 41 1 2.8180 -3.1579 6.4441 42 1 5.6468 -1.0002 2.1316 43 1 4.6635 -0.2892 3.4234 44 1 4.2939 0.5500 0.9664 45 1 2.8601 0.1945 1.9596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981461454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = 49.194280 kcal Electronic energy + Delta-G solvation = -29926.718361 eV Core-core repulsion = 25911.939241 eV Total energy + Delta-G solvation = -4014.779120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.30416 -41.89485 -39.80857 -38.74078 -36.36919 -35.83832 -34.29125 -33.97118 -33.27240 -32.21676 -30.29515 -29.12729 -27.51151 -25.90563 -24.73409 -24.42407 -23.79763 -22.81706 -22.35778 -21.65620 -20.51952 -19.38151 -19.12562 -18.41152 -17.82313 -17.61913 -17.12149 -17.04553 -16.51560 -16.31286 -15.95402 -15.46097 -15.37165 -15.31640 -14.98373 -14.87807 -14.63884 -14.38088 -14.26084 -14.13150 -13.81322 -13.59885 -13.42483 -13.16222 -12.75229 -12.47011 -12.45635 -12.16130 -12.08159 -11.94251 -11.66601 -11.63302 -11.54443 -11.31872 -11.11866 -10.82234 -10.64683 -10.15430 -9.69151 -9.17371 -8.94011 -8.56332 -5.48023 -0.73500 0.25838 0.67921 1.40687 1.50935 1.58338 1.65057 1.66643 1.82184 2.04445 2.56430 2.65741 3.04276 3.30444 3.37390 3.44593 3.52903 3.73422 3.81846 3.94789 3.98608 4.10009 4.13941 4.17926 4.27783 4.35506 4.47282 4.51081 4.60107 4.65575 4.70879 4.74373 4.85162 4.89442 4.90692 4.92103 4.95297 5.13773 5.18467 5.23647 5.26606 5.32456 5.46848 5.61850 5.71326 5.80803 6.28498 6.34950 6.63694 6.90692 7.10638 7.72230 8.04618 8.86337 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.002907 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.410974 B = 9631.089824 C = 9765.995562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.072 4.072 3 Si 1.094 2.906 4 H -0.292 1.292 5 H -0.311 1.311 6 H -0.252 1.252 7 C -0.322 4.322 8 H 0.034 0.966 9 N -0.609 5.609 10 C 0.152 3.848 11 C -0.169 4.169 12 C 0.096 3.904 13 N -0.580 5.580 14 C 0.545 3.455 15 O -0.587 6.587 16 C -0.133 4.133 17 C -0.099 4.099 18 C -0.095 4.095 19 C 0.003 3.997 20 C -0.025 4.025 21 C -0.016 4.016 22 N -0.522 5.522 23 C 0.193 3.807 24 O -0.207 6.207 25 C -0.106 4.106 26 C -0.070 4.070 27 C 0.107 3.893 28 C 0.101 3.899 29 H 0.246 0.754 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.038 0.962 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.206 0.794 39 H 0.297 0.703 40 H 0.149 0.851 41 H 0.133 0.867 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.276 -19.200 12.235 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.266 4.266 3 Si 0.921 3.079 4 H -0.219 1.219 5 H -0.240 1.240 6 H -0.176 1.176 7 C -0.452 4.452 8 H 0.052 0.948 9 N -0.333 5.333 10 C 0.026 3.974 11 C -0.209 4.209 12 C -0.024 4.024 13 N -0.309 5.309 14 C 0.335 3.665 15 O -0.469 6.469 16 C -0.136 4.136 17 C -0.117 4.117 18 C -0.113 4.113 19 C 0.002 3.998 20 C -0.077 4.077 21 C -0.155 4.155 22 N -0.250 5.250 23 C -0.031 4.031 24 O -0.094 6.094 25 C -0.124 4.124 26 C -0.089 4.089 27 C -0.018 4.018 28 C -0.024 4.024 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.223 0.777 39 H 0.312 0.688 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.131 0.869 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 12.814 -17.682 12.268 25.047 hybrid contribution -0.814 -0.560 0.170 1.003 sum 12.000 -18.242 12.438 25.129 Atomic orbital electron populations 1.70971 1.07866 1.28445 1.52999 1.27231 0.96352 1.04609 0.98402 0.83490 0.75112 0.73128 0.76179 1.21905 1.23991 1.17607 1.20035 0.90823 0.94307 1.40055 0.94791 1.44027 1.10041 1.33522 1.45738 1.20476 0.93743 0.87515 0.95655 1.21767 1.00209 1.01379 0.97511 1.21611 1.00406 0.87669 0.92668 1.47454 1.43434 1.08474 1.31556 1.18805 0.78517 0.89165 0.79980 1.90755 1.54481 1.41877 1.59759 1.20068 1.04985 0.92939 0.95613 1.21780 0.96806 0.91896 1.01188 1.21006 0.98651 0.97617 0.93994 1.17920 0.99797 0.88205 0.93836 1.21389 1.08628 0.95883 0.81819 1.23766 1.02404 0.87153 1.02177 1.70404 1.19570 1.32553 1.02448 1.29295 0.96191 0.78793 0.98829 1.84486 1.66170 1.29136 1.29572 1.21059 0.99219 0.91427 1.00680 1.20910 0.96375 0.97579 0.94041 1.21591 0.98152 0.84192 0.97886 1.22532 0.97259 0.92297 0.90320 0.94491 0.93860 0.91001 0.87403 0.94296 0.87447 0.87240 0.82512 0.81693 0.77714 0.68788 0.83296 0.84953 0.86940 0.91029 0.93077 0.95284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.02 13.70 21.65 0.30 -63.73 16 2 C -0.07 -4.37 5.12 84.86 0.43 -3.93 16 3 Si 1.09 55.46 24.48 68.60 1.68 57.14 16 4 H -0.29 -14.52 6.81 99.48 0.68 -13.84 16 5 H -0.31 -16.12 7.11 99.48 0.71 -15.41 16 6 H -0.25 -11.18 6.48 99.48 0.64 -10.53 16 7 C -0.32 -18.31 9.53 84.03 0.80 -17.51 16 8 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 9 N -0.61 -27.57 2.33 -699.19 -1.63 -29.19 16 10 C 0.15 5.11 5.59 87.02 0.49 5.60 16 11 C -0.17 -4.48 4.87 28.85 0.14 -4.34 16 12 C 0.10 2.19 5.04 84.23 0.42 2.61 16 13 N -0.58 -18.74 2.46 -834.92 -2.05 -20.79 16 14 C 0.55 20.62 7.34 86.71 0.64 21.25 16 15 O -0.59 -27.75 16.47 -3.99 -0.07 -27.82 16 16 C -0.13 -4.03 5.40 -20.05 -0.11 -4.14 16 17 C -0.10 -2.45 7.27 22.26 0.16 -2.29 16 18 C -0.09 -1.86 9.51 22.26 0.21 -1.64 16 19 C 0.00 0.07 5.88 -20.05 -0.12 -0.05 16 20 C -0.02 -0.47 7.06 24.21 0.17 -0.30 16 21 C -0.02 -0.28 11.29 83.82 0.95 0.67 16 22 N -0.52 -9.45 11.27 -315.04 -3.55 -13.00 16 23 C 0.19 2.39 13.21 130.45 1.72 4.12 16 24 O -0.21 -3.54 10.57 -7.65 -0.08 -3.62 16 25 C -0.11 -2.31 9.67 22.26 0.22 -2.10 16 26 C -0.07 -1.87 9.56 22.26 0.21 -1.66 16 27 C 0.11 3.54 5.21 87.55 0.46 4.00 16 28 C 0.10 4.35 4.54 86.56 0.39 4.74 16 29 H 0.25 16.57 8.73 -92.71 -0.81 15.76 16 30 H 0.04 1.53 8.02 -2.39 -0.02 1.51 16 31 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.04 1.34 6.27 -2.39 -0.01 1.33 16 34 H 0.11 1.73 8.05 -2.39 -0.02 1.71 16 35 H 0.11 2.13 4.27 -2.39 -0.01 2.12 16 36 H 0.16 3.91 3.24 -2.91 -0.01 3.90 16 37 H 0.17 2.12 7.02 -2.91 -0.02 2.10 16 38 H 0.21 2.55 7.29 -2.91 -0.02 2.52 16 39 H 0.30 0.20 8.06 -2.91 -0.02 0.18 16 40 H 0.15 2.66 7.93 -2.91 -0.02 2.64 16 41 H 0.13 3.52 8.02 -2.91 -0.02 3.50 16 42 H 0.11 2.70 7.73 -2.39 -0.02 2.68 16 43 H 0.07 2.45 7.46 -2.39 -0.02 2.44 16 44 H 0.05 2.05 5.83 -2.39 -0.01 2.03 16 45 H 0.03 1.52 5.69 -2.39 -0.01 1.51 16 Total: -1.00 -86.55 355.14 2.70 -83.85 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.91 Total: 12.13 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 7.19 Total: 5.03 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -6.93 Total: -126.72 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.15 Total: -31.43 kcal Atomic # 14 Polarization: 55.46 SS G_CDS: 1.68 Total: 57.14 kcal Total: -86.55 2.70 -83.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981461454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.043 kcal (2) G-P(sol) polarization free energy of solvation -86.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds