Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00150 * 2 1 4 4 H 1.48497 * 109.47479 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.46847 * 239.99934 * 3 2 1 6 6 H 1.48498 * 109.47371 * 120.00024 * 3 2 1 7 7 C 1.38814 * 119.99259 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99473 * 213.79323 * 7 2 1 9 9 N 1.36933 * 120.00494 * 33.80205 * 7 2 1 10 10 C 1.43457 * 118.94103 * 204.33015 * 9 7 2 11 11 C 1.53800 * 107.95874 * 273.60508 * 10 9 7 12 12 C 1.47140 * 111.83992 * 281.66634 * 11 10 9 13 13 N 1.48219 * 110.34165 * 58.29700 * 12 11 10 14 14 C 1.34770 * 119.97305 * 102.46826 * 13 12 11 15 15 O 1.21648 * 119.99753 * 351.58132 * 14 13 12 16 16 C 1.47135 * 120.00323 * 171.57455 * 14 13 12 17 17 C 1.37945 * 120.54989 * 24.58449 * 16 14 13 18 18 N 1.33958 * 122.20178 * 179.72628 * 17 16 14 19 19 H 0.96997 * 118.59379 * 180.25784 * 18 17 16 20 20 C 1.37795 * 122.80367 * 0.59244 * 18 17 16 21 21 C 1.39278 * 120.52774 * 179.71335 * 20 18 17 22 22 C 1.37730 * 119.97695 * 179.97438 * 21 20 18 23 23 C 1.38792 * 120.72578 * 0.02562 * 22 21 20 24 24 C 1.37713 * 120.28889 * 359.93349 * 23 22 21 25 25 C 1.39492 * 119.61086 * 0.08788 * 24 23 22 26 26 C 1.47143 * 120.55471 * 204.86938 * 16 14 13 27 27 O 1.21862 * 121.41129 * 359.97438 * 26 16 14 28 28 C 1.43623 * 120.05494 * 282.49129 * 13 12 11 29 29 C 1.48859 * 118.94080 * 24.04878 * 9 7 2 30 30 H 0.96996 * 120.00508 * 185.89205 * 1 2 3 31 31 H 1.08998 * 109.76517 * 33.21588 * 10 9 7 32 32 H 1.09001 * 109.76976 * 153.93691 * 10 9 7 33 33 H 1.09010 * 109.00556 * 42.26889 * 11 10 9 34 34 H 1.08994 * 109.01169 * 161.05300 * 11 10 9 35 35 H 1.09002 * 109.32555 * 178.55704 * 12 11 10 36 36 H 1.08996 * 109.32854 * 298.20510 * 12 11 10 37 37 H 1.08000 * 118.89415 * 0.02562 * 17 16 14 38 38 H 1.08005 * 120.00621 * 359.97438 * 21 20 18 39 39 H 1.08003 * 119.63600 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.85360 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.19079 * 180.02562 * 24 23 22 42 42 H 1.09003 * 108.86775 * 211.44699 * 28 13 12 43 43 H 1.08992 * 108.87556 * 329.98092 * 28 13 12 44 44 H 1.08999 * 109.48298 * 260.63415 * 29 9 7 45 45 H 1.09006 * 109.47611 * 20.66657 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7465 -0.0006 5 1 3.1040 1.6962 -1.2126 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.9533 -1.2811 0.5208 9 7 1.4990 -2.2882 -0.6587 10 6 1.8976 -3.6026 -0.2445 11 6 3.2007 -3.9569 -0.9805 12 6 2.9496 -4.3686 -2.3707 13 7 2.2518 -3.2897 -3.1095 14 6 2.9386 -2.5054 -3.9637 15 8 4.1518 -2.5792 -4.0155 16 6 2.2212 -1.5602 -4.8335 17 6 0.9755 -1.0865 -4.4774 18 7 0.2956 -0.2214 -5.2414 19 1 -0.5751 0.0805 -4.9386 20 6 0.7773 0.2527 -6.4422 21 6 0.0271 1.1473 -7.2018 22 6 0.5198 1.6144 -8.4001 23 6 1.7612 1.2032 -8.8650 24 6 2.5204 0.3199 -8.1302 25 6 2.0339 -0.1618 -6.9149 26 6 2.8178 -1.1092 -6.1007 27 8 3.9133 -1.5018 -6.4622 28 6 0.8445 -3.0789 -2.9155 29 6 0.5428 -2.0670 -1.7779 30 1 -0.4851 -0.8355 0.0862 31 1 2.0676 -3.6141 0.8321 32 1 1.1204 -4.3220 -0.5025 33 1 3.8562 -3.0859 -0.9811 34 1 3.6962 -4.7719 -0.4529 35 1 3.8993 -4.5848 -2.8600 36 1 2.3293 -5.2648 -2.3751 37 1 0.5358 -1.4208 -3.5493 38 1 -0.9405 1.4746 -6.8511 39 1 -0.0667 2.3076 -8.9849 40 1 2.1337 1.5780 -9.8069 41 1 3.4864 0.0013 -8.4933 42 1 0.4128 -2.7050 -3.8440 43 1 0.3761 -4.0314 -2.6679 44 1 -0.4763 -2.2115 -1.4193 45 1 0.6547 -1.0508 -2.1561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981529227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = 51.015686 kcal Electronic energy + Delta-G solvation = -31005.637047 eV Core-core repulsion = 26990.936909 eV Total energy + Delta-G solvation = -4014.700138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.26677 -39.70747 -37.94299 -37.31098 -36.79850 -34.45173 -33.60741 -31.75826 -31.18812 -30.44276 -29.93589 -27.98643 -25.57991 -24.32608 -24.14845 -23.57419 -22.31817 -22.12899 -19.91794 -19.62231 -18.71239 -18.22837 -17.57691 -17.24676 -16.10920 -15.89340 -15.78702 -15.34019 -15.05994 -14.70644 -14.51040 -14.27405 -14.01066 -13.92901 -13.64018 -13.48791 -13.21664 -13.06860 -12.86725 -12.58938 -12.29640 -12.13919 -12.04457 -11.81712 -11.48045 -11.23732 -10.96235 -10.75386 -10.54495 -10.39548 -10.28324 -10.07509 -9.66492 -9.57523 -9.32924 -9.16821 -8.99959 -8.35580 -8.14115 -7.74395 -7.05041 -6.24681 -3.29785 0.68356 0.73759 1.64677 2.74907 2.82033 3.40326 3.44520 3.51394 3.52075 3.66525 4.04474 4.26272 4.44141 4.49332 4.64070 4.68551 4.84287 4.98159 5.01263 5.08437 5.13143 5.30408 5.42014 5.46449 5.50186 5.62923 5.66335 5.70462 5.75769 5.83197 5.84985 5.92704 6.10559 6.17540 6.29804 6.33637 6.39817 6.44876 6.47306 6.57917 6.72815 6.82796 6.91750 6.96914 7.17627 7.93169 7.98837 8.06546 8.43448 8.81721 8.99693 9.71115 10.09371 11.02673 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.004757 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.507542 B = 5884.835299 C = 7133.472927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.015 4.015 3 Si 1.039 2.961 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.354 4.354 8 H 0.058 0.942 9 N -0.586 5.586 10 C 0.164 3.836 11 C -0.170 4.170 12 C 0.135 3.865 13 N -0.589 5.589 14 C 0.586 3.414 15 O -0.528 6.528 16 C -0.328 4.328 17 C 0.164 3.836 18 N -0.596 5.596 19 H 0.423 0.577 20 C 0.184 3.816 21 C -0.170 4.170 22 C -0.062 4.062 23 C -0.159 4.159 24 C -0.032 4.032 25 C -0.185 4.185 26 C 0.435 3.565 27 O -0.462 6.462 28 C 0.057 3.943 29 C 0.120 3.880 30 H 0.267 0.733 31 H 0.049 0.951 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.220 0.780 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 -1.483 -13.973 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.217 4.217 3 Si 0.868 3.132 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.482 4.482 8 H 0.076 0.924 9 N -0.308 5.308 10 C 0.037 3.963 11 C -0.211 4.211 12 C 0.014 3.986 13 N -0.322 5.322 14 C 0.375 3.625 15 O -0.404 6.404 16 C -0.339 4.339 17 C 0.033 3.967 18 N -0.203 5.203 19 H 0.260 0.740 20 C 0.082 3.918 21 C -0.191 4.191 22 C -0.081 4.081 23 C -0.178 4.178 24 C -0.050 4.050 25 C -0.189 4.189 26 C 0.317 3.683 27 O -0.340 6.340 28 C -0.069 4.069 29 C -0.007 4.007 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.235 0.765 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.382 -0.114 -14.276 15.258 hybrid contribution -0.298 -1.299 0.453 1.407 sum -5.680 -1.413 -13.824 15.012 Atomic orbital electron populations 1.70860 1.06692 1.29780 1.47173 1.25566 0.96046 1.01065 0.99062 0.83912 0.75547 0.76844 0.76893 1.21117 1.21919 1.21675 1.19910 1.03652 0.91271 1.33415 0.92448 1.43556 1.52522 1.01858 1.32903 1.20320 0.92722 0.86609 0.96696 1.21833 1.01949 1.01585 0.95690 1.20529 0.97472 0.87839 0.92801 1.47159 1.08596 1.33972 1.42465 1.17281 0.86671 0.79536 0.78968 1.90769 1.13071 1.67708 1.68874 1.21838 0.97320 1.12146 1.02620 1.24619 0.92046 0.84486 0.95590 1.41063 1.21220 1.40292 1.17746 0.74017 1.18031 0.93213 0.94456 0.86053 1.20735 1.01043 1.00652 0.96626 1.21079 0.95322 0.97184 0.94510 1.21113 0.95397 1.00165 1.01162 1.21136 0.99291 0.93114 0.91478 1.20305 0.95173 1.04555 0.98829 1.19334 0.85596 0.79389 0.83971 1.90700 1.19218 1.52816 1.71301 1.22714 0.82888 1.01798 0.99530 1.22405 0.93792 0.97022 0.87455 0.92310 0.93234 0.94919 0.90893 0.92504 0.90290 0.92120 0.76489 0.84760 0.85107 0.85215 0.84323 0.89945 0.90864 0.93928 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.40 12.66 55.49 0.70 -23.70 16 2 C -0.01 -0.39 4.39 -17.43 -0.08 -0.47 16 3 Si 1.04 24.79 30.03 -169.99 -5.10 19.68 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.35 -9.36 9.06 -15.06 -0.14 -9.50 16 8 H 0.06 1.61 8.02 -52.49 -0.42 1.19 16 9 N -0.59 -13.23 2.41 -171.79 -0.41 -13.64 16 10 C 0.16 3.19 5.63 -5.24 -0.03 3.16 16 11 C -0.17 -3.11 5.64 -29.13 -0.16 -3.27 16 12 C 0.13 2.32 5.65 -5.91 -0.03 2.28 16 13 N -0.59 -10.93 2.46 -178.07 -0.44 -11.36 16 14 C 0.59 12.67 7.46 -12.65 -0.09 12.57 16 15 O -0.53 -13.47 15.43 -12.41 -0.19 -13.66 16 16 C -0.33 -6.25 5.84 -102.78 -0.60 -6.85 16 17 C 0.16 2.47 8.40 -16.73 -0.14 2.33 16 18 N -0.60 -7.00 5.21 -10.42 -0.05 -7.06 16 19 H 0.42 3.42 8.73 -40.82 -0.36 3.06 16 20 C 0.18 2.29 6.66 -83.94 -0.56 1.73 16 21 C -0.17 -1.57 9.86 -39.38 -0.39 -1.96 16 22 C -0.06 -0.52 10.01 -39.56 -0.40 -0.92 16 23 C -0.16 -1.53 10.03 -39.57 -0.40 -1.92 16 24 C -0.03 -0.41 9.65 -39.31 -0.38 -0.79 16 25 C -0.18 -2.81 5.89 -104.81 -0.62 -3.43 16 26 C 0.43 8.47 7.12 -32.21 -0.23 8.24 16 27 O -0.46 -10.49 16.14 -12.60 -0.20 -10.70 16 28 C 0.06 0.89 4.71 -4.40 -0.02 0.87 16 29 C 0.12 2.31 4.46 -1.57 -0.01 2.30 16 30 H 0.27 7.14 6.99 -40.82 -0.29 6.86 16 31 H 0.05 1.00 8.02 -51.93 -0.42 0.59 16 32 H 0.03 0.56 7.59 -51.93 -0.39 0.17 16 33 H 0.07 1.63 7.91 -51.92 -0.41 1.22 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.43 7.23 -51.93 -0.38 1.05 16 36 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 37 H 0.22 3.26 1.59 -52.81 -0.08 3.18 16 38 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.14 1.75 7.79 -52.49 -0.41 1.34 16 42 H 0.08 1.10 4.33 -51.93 -0.22 0.88 16 43 H 0.07 0.99 7.72 -51.93 -0.40 0.59 16 44 H 0.04 0.81 7.38 -51.93 -0.38 0.43 16 45 H 0.07 1.57 4.98 -51.93 -0.26 1.31 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -36.25 354.74 -9.95 -46.20 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.32 Total: 4.51 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -4.27 Total: 4.39 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.20 Total: -55.76 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.39 Total: -24.36 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.10 Total: 19.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.25 -9.95 -46.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981529227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.217 kcal (2) G-P(sol) polarization free energy of solvation -36.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds