Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00175 * 2 1 4 4 H 1.48497 * 109.47008 * 86.63471 * 3 2 1 5 5 H 1.48497 * 109.46943 * 326.63400 * 3 2 1 6 6 H 1.48502 * 109.46922 * 206.63504 * 3 2 1 7 7 C 1.38814 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99876 * 27.10618 * 7 2 1 9 9 N 1.36932 * 119.99916 * 207.10091 * 7 2 1 10 10 C 1.43463 * 118.93877 * 204.04428 * 9 7 2 11 11 C 1.53799 * 107.96142 * 273.61180 * 10 9 7 12 12 C 1.47139 * 111.83843 * 281.66388 * 11 10 9 13 13 N 1.48215 * 110.33946 * 58.29922 * 12 11 10 14 14 C 1.34781 * 119.97061 * 102.46796 * 13 12 11 15 15 O 1.21581 * 119.99878 * 5.96032 * 14 13 12 16 16 C 1.47530 * 120.00264 * 185.96236 * 14 13 12 17 17 C 1.36614 * 126.83189 * 186.03564 * 16 14 13 18 18 C 1.42188 * 103.79273 * 179.97438 * 17 16 14 19 19 C 1.48448 * 126.84260 * 180.11657 * 18 17 16 20 20 C 1.39323 * 120.11855 * 0.02562 * 19 18 17 21 21 C 1.38020 * 119.87676 * 179.78761 * 20 19 18 22 22 C 1.38322 * 120.12521 * 0.46976 * 21 20 19 23 23 C 1.38327 * 120.23504 * 359.78390 * 22 21 20 24 24 C 1.38020 * 120.12040 * 359.97438 * 23 22 21 25 25 N 1.30931 * 106.31437 * 0.33537 * 18 17 16 26 26 O 1.20867 * 111.80565 * 359.78433 * 25 18 17 27 27 C 1.43620 * 120.06350 * 282.48354 * 13 12 11 28 28 C 1.48859 * 118.93971 * 23.77712 * 9 7 2 29 29 H 0.96991 * 120.00196 * 185.09714 * 1 2 3 30 30 H 1.09003 * 109.76563 * 33.23051 * 10 9 7 31 31 H 1.08999 * 109.76149 * 153.94154 * 10 9 7 32 32 H 1.09000 * 109.00476 * 42.27205 * 11 10 9 33 33 H 1.08998 * 109.00624 * 161.05630 * 11 10 9 34 34 H 1.09007 * 109.32248 * 178.55790 * 12 11 10 35 35 H 1.08996 * 109.33049 * 298.20500 * 12 11 10 36 36 H 1.08007 * 128.10372 * 0.03253 * 17 16 14 37 37 H 1.07999 * 120.06175 * 0.02562 * 20 19 18 38 38 H 1.08007 * 119.94202 * 180.25239 * 21 20 19 39 39 H 1.07996 * 119.88605 * 179.76225 * 22 21 20 40 40 H 1.07994 * 119.93611 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.06330 * 180.02562 * 24 23 22 42 42 H 1.08988 * 108.87655 * 211.44817 * 27 13 12 43 43 H 1.08996 * 108.87456 * 329.89123 * 27 13 12 44 44 H 1.08995 * 109.47965 * 260.62375 * 28 9 7 45 45 H 1.08998 * 109.48213 * 20.66154 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4266 2.0875 1.3976 5 1 1.4851 2.6310 -0.7700 6 1 3.5816 1.4206 -0.6277 7 6 2.0102 -1.2022 0.0005 8 1 1.5592 -2.0863 -0.4252 9 7 3.2668 -1.2671 0.5408 10 6 4.1601 -2.2989 0.0986 11 6 3.8927 -3.5535 0.9471 12 6 4.5127 -3.4565 2.2780 13 7 4.0037 -2.2651 2.9978 14 6 3.0728 -2.4078 3.9620 15 8 2.7300 -3.5191 4.3163 16 6 2.4697 -1.2154 4.5873 17 6 1.6069 -1.1940 5.6464 18 6 1.3412 0.1895 5.8391 19 6 0.4587 0.7912 6.8701 20 6 -0.2118 -0.0246 7.7789 21 6 -1.0276 0.5404 8.7382 22 6 -1.1878 1.9132 8.7922 23 6 -0.5286 2.7275 7.8890 24 6 0.2935 2.1734 6.9288 25 7 2.0262 0.8267 4.9231 26 8 2.6547 0.0677 4.2234 27 6 4.5013 -0.9587 2.6688 28 6 3.6639 -0.2611 1.5636 29 1 -0.4850 -0.8366 0.0746 30 1 3.9770 -2.5192 -0.9531 31 1 5.1922 -1.9752 0.2329 32 1 2.8165 -3.6794 1.0651 33 1 4.2960 -4.4242 0.4301 34 1 4.2768 -4.3527 2.8519 35 1 5.5938 -3.3733 2.1671 36 1 1.2185 -2.0316 6.2067 37 1 -0.0904 -1.0969 7.7353 38 1 -1.5447 -0.0908 9.4459 39 1 -1.8301 2.3510 9.5420 40 1 -0.6569 3.7988 7.9358 41 1 0.8081 2.8100 6.2243 42 1 4.4871 -0.3397 3.5658 43 1 5.5307 -1.0504 2.3223 44 1 4.2583 0.5215 1.0922 45 1 2.7706 0.1783 2.0074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981532123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = 96.044485 kcal Electronic energy + Delta-G solvation = -30465.977273 eV Core-core repulsion = 26453.229730 eV Total energy + Delta-G solvation = -4012.747543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.83943 -39.92661 -39.22212 -37.36441 -34.71526 -34.28850 -33.15129 -31.78565 -31.40121 -31.04239 -30.33964 -27.87564 -26.09921 -24.35864 -24.17427 -23.21676 -22.84747 -21.94640 -21.23132 -19.89221 -19.46105 -17.99028 -17.61241 -17.06116 -16.70504 -16.37131 -16.15496 -15.45852 -15.32511 -14.94735 -14.58163 -14.21799 -13.97304 -13.78089 -13.56622 -13.42836 -13.36232 -13.19922 -13.14666 -12.82532 -12.45272 -12.16883 -11.69643 -11.60293 -11.52843 -11.43842 -11.09680 -10.98249 -10.77232 -10.48723 -10.31763 -10.11607 -9.94596 -9.78486 -9.63341 -9.22791 -9.12263 -8.62913 -8.48680 -8.34588 -6.98995 -6.31967 -3.26467 0.72578 1.04394 1.23395 2.40453 2.69424 3.24270 3.30639 3.46557 3.54997 3.69308 3.73233 3.90741 4.32721 4.63364 4.76686 4.78438 4.89623 4.91152 4.92698 5.09796 5.21643 5.24725 5.32889 5.35395 5.41785 5.47314 5.50153 5.68076 5.72582 5.76020 5.83904 5.86792 5.89160 6.02238 6.22719 6.26156 6.27594 6.32244 6.36462 6.41884 6.59235 6.66659 6.72535 6.75861 7.00501 7.48713 8.04077 8.07895 8.26160 8.46488 9.03720 9.68275 10.14871 11.11910 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.004129 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.878870 B = 6778.934149 C = 8158.617999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.004 4.004 3 Si 1.037 2.963 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.354 4.354 8 H 0.067 0.933 9 N -0.598 5.598 10 C 0.160 3.840 11 C -0.171 4.171 12 C 0.130 3.870 13 N -0.570 5.570 14 C 0.609 3.391 15 O -0.525 6.525 16 C -0.065 4.065 17 C -0.149 4.149 18 C 0.045 3.955 19 C -0.015 4.015 20 C -0.095 4.095 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.091 4.091 25 N -0.336 5.336 26 O 0.137 5.863 27 C 0.085 3.915 28 C 0.107 3.893 29 H 0.264 0.736 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.182 0.818 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 -0.086 15.564 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.207 4.207 3 Si 0.868 3.132 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.212 1.212 7 C -0.482 4.482 8 H 0.085 0.915 9 N -0.321 5.321 10 C 0.032 3.968 11 C -0.212 4.212 12 C 0.010 3.990 13 N -0.300 5.300 14 C 0.394 3.606 15 O -0.403 6.403 16 C -0.130 4.130 17 C -0.172 4.172 18 C -0.110 4.110 19 C -0.015 4.015 20 C -0.114 4.114 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.110 4.110 25 N -0.033 5.033 26 O 0.061 5.939 27 C -0.041 4.041 28 C -0.019 4.019 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.199 0.801 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.847 2.236 15.314 16.544 hybrid contribution -0.182 -2.219 0.176 2.233 sum 5.665 0.018 15.490 16.494 Atomic orbital electron populations 1.70853 1.06600 1.29544 1.47837 1.26040 0.96232 1.00710 0.97698 0.84217 0.75189 0.77246 0.76545 1.21625 1.22680 1.21221 1.20151 0.91339 0.96642 1.40111 0.91530 1.43958 1.13255 1.32276 1.42597 1.20346 0.92446 0.87818 0.96166 1.21854 1.02717 1.00698 0.95970 1.20723 0.97542 0.87278 0.93468 1.47270 1.39534 1.08645 1.34515 1.16542 0.79061 0.85313 0.79642 1.90797 1.62056 1.23588 1.63841 1.24104 1.03470 0.86441 0.99002 1.22749 0.99027 0.96999 0.98381 1.21898 1.00854 0.90705 0.97559 1.17688 0.96722 0.93228 0.93907 1.21148 0.96129 0.99862 0.94312 1.21063 0.98907 0.95195 0.98663 1.21269 0.99198 0.93813 0.98861 1.21113 0.97157 1.00169 0.95344 1.21280 0.97771 0.93813 0.98128 1.73985 1.07692 1.17668 1.03969 1.85181 1.50863 1.13381 1.44515 1.22131 0.98652 0.83484 0.99863 1.22642 0.98526 0.91739 0.88954 0.92605 0.92916 0.94570 0.91059 0.91956 0.89749 0.91211 0.80061 0.85363 0.85468 0.85794 0.85517 0.85170 0.90413 0.90424 0.94307 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.49 13.70 55.49 0.76 -27.73 16 2 C 0.00 -0.13 5.04 -17.43 -0.09 -0.22 16 3 Si 1.04 26.22 24.52 -169.99 -4.17 22.05 16 4 H -0.29 -6.99 6.74 56.52 0.38 -6.61 16 5 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.29 -6.78 6.78 56.52 0.38 -6.39 16 7 C -0.35 -9.81 9.51 -15.06 -0.14 -9.96 16 8 H 0.07 2.00 8.06 -52.49 -0.42 1.57 16 9 N -0.60 -13.76 2.32 -171.78 -0.40 -14.16 16 10 C 0.16 3.02 5.63 -5.23 -0.03 2.99 16 11 C -0.17 -2.90 5.64 -29.13 -0.16 -3.06 16 12 C 0.13 1.97 5.73 -5.91 -0.03 1.94 16 13 N -0.57 -9.79 2.46 -177.67 -0.44 -10.23 16 14 C 0.61 11.41 7.66 -12.47 -0.10 11.31 16 15 O -0.53 -10.61 16.34 5.29 0.09 -10.52 16 16 C -0.06 -1.17 6.77 -36.38 -0.25 -1.42 16 17 C -0.15 -2.40 10.31 -38.65 -0.40 -2.80 16 18 C 0.05 0.75 7.05 -82.53 -0.58 0.16 16 19 C -0.01 -0.21 5.88 -104.88 -0.62 -0.82 16 20 C -0.10 -1.10 9.60 -39.26 -0.38 -1.48 16 21 C -0.12 -1.17 10.03 -39.63 -0.40 -1.56 16 22 C -0.11 -1.06 10.04 -39.52 -0.40 -1.46 16 23 C -0.12 -1.27 10.03 -39.63 -0.40 -1.67 16 24 C -0.09 -1.20 9.70 -39.26 -0.38 -1.58 16 25 N -0.34 -6.24 11.78 33.39 0.39 -5.85 16 26 O 0.14 2.58 6.46 15.54 0.10 2.68 16 27 C 0.08 1.38 4.77 -4.39 -0.02 1.36 16 28 C 0.11 2.25 4.35 -1.56 -0.01 2.24 16 29 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 30 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 31 H 0.04 0.59 7.59 -51.93 -0.39 0.20 16 32 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.28 7.08 -51.93 -0.37 0.91 16 35 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 36 H 0.18 2.41 7.57 -52.48 -0.40 2.01 16 37 H 0.13 1.27 7.22 -52.49 -0.38 0.89 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.76 7.89 -52.49 -0.41 1.35 16 42 H 0.08 1.18 5.66 -51.94 -0.29 0.89 16 43 H 0.08 1.05 7.73 -51.93 -0.40 0.65 16 44 H 0.04 0.80 6.11 -51.93 -0.32 0.48 16 45 H 0.08 1.88 4.00 -51.93 -0.21 1.67 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -33.74 359.88 -8.34 -42.08 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.72 Total: 2.26 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -4.37 Total: -6.01 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.32 Total: -57.96 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.19 Total: -7.84 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -4.17 Total: 22.05 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.74 -8.34 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981532123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.125 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds