Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00175 * 2 1 4 4 H 1.48497 * 109.47008 * 86.63471 * 3 2 1 5 5 H 1.48497 * 109.46943 * 326.63400 * 3 2 1 6 6 H 1.48502 * 109.46922 * 206.63504 * 3 2 1 7 7 C 1.38814 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99876 * 27.10618 * 7 2 1 9 9 N 1.36932 * 119.99916 * 207.10091 * 7 2 1 10 10 C 1.43463 * 118.93877 * 204.04428 * 9 7 2 11 11 C 1.53799 * 107.96142 * 273.61180 * 10 9 7 12 12 C 1.47139 * 111.83843 * 281.66388 * 11 10 9 13 13 N 1.48215 * 110.33946 * 58.29922 * 12 11 10 14 14 C 1.34781 * 119.97061 * 102.46796 * 13 12 11 15 15 O 1.21581 * 119.99878 * 5.96032 * 14 13 12 16 16 C 1.47530 * 120.00264 * 185.96236 * 14 13 12 17 17 C 1.36614 * 126.83189 * 186.03564 * 16 14 13 18 18 C 1.42188 * 103.79273 * 179.97438 * 17 16 14 19 19 C 1.48448 * 126.84260 * 180.11657 * 18 17 16 20 20 C 1.39323 * 120.11855 * 0.02562 * 19 18 17 21 21 C 1.38020 * 119.87676 * 179.78761 * 20 19 18 22 22 C 1.38322 * 120.12521 * 0.46976 * 21 20 19 23 23 C 1.38327 * 120.23504 * 359.78390 * 22 21 20 24 24 C 1.38020 * 120.12040 * 359.97438 * 23 22 21 25 25 N 1.30931 * 106.31437 * 0.33537 * 18 17 16 26 26 O 1.20867 * 111.80565 * 359.78433 * 25 18 17 27 27 C 1.43620 * 120.06350 * 282.48354 * 13 12 11 28 28 C 1.48859 * 118.93971 * 23.77712 * 9 7 2 29 29 H 0.96991 * 120.00196 * 185.09714 * 1 2 3 30 30 H 1.09003 * 109.76563 * 33.23051 * 10 9 7 31 31 H 1.08999 * 109.76149 * 153.94154 * 10 9 7 32 32 H 1.09000 * 109.00476 * 42.27205 * 11 10 9 33 33 H 1.08998 * 109.00624 * 161.05630 * 11 10 9 34 34 H 1.09007 * 109.32248 * 178.55790 * 12 11 10 35 35 H 1.08996 * 109.33049 * 298.20500 * 12 11 10 36 36 H 1.08007 * 128.10372 * 0.03253 * 17 16 14 37 37 H 1.07999 * 120.06175 * 0.02562 * 20 19 18 38 38 H 1.08007 * 119.94202 * 180.25239 * 21 20 19 39 39 H 1.07996 * 119.88605 * 179.76225 * 22 21 20 40 40 H 1.07994 * 119.93611 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.06330 * 180.02562 * 24 23 22 42 42 H 1.08988 * 108.87655 * 211.44817 * 27 13 12 43 43 H 1.08996 * 108.87456 * 329.89123 * 27 13 12 44 44 H 1.08995 * 109.47965 * 260.62375 * 28 9 7 45 45 H 1.08998 * 109.48213 * 20.66154 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4266 2.0875 1.3976 5 1 1.4851 2.6310 -0.7700 6 1 3.5816 1.4206 -0.6277 7 6 2.0102 -1.2022 0.0005 8 1 1.5592 -2.0863 -0.4252 9 7 3.2668 -1.2671 0.5408 10 6 4.1601 -2.2989 0.0986 11 6 3.8927 -3.5535 0.9471 12 6 4.5127 -3.4565 2.2780 13 7 4.0037 -2.2651 2.9978 14 6 3.0728 -2.4078 3.9620 15 8 2.7300 -3.5191 4.3163 16 6 2.4697 -1.2154 4.5873 17 6 1.6069 -1.1940 5.6464 18 6 1.3412 0.1895 5.8391 19 6 0.4587 0.7912 6.8701 20 6 -0.2118 -0.0246 7.7789 21 6 -1.0276 0.5404 8.7382 22 6 -1.1878 1.9132 8.7922 23 6 -0.5286 2.7275 7.8890 24 6 0.2935 2.1734 6.9288 25 7 2.0262 0.8267 4.9231 26 8 2.6547 0.0677 4.2234 27 6 4.5013 -0.9587 2.6688 28 6 3.6639 -0.2611 1.5636 29 1 -0.4850 -0.8366 0.0746 30 1 3.9770 -2.5192 -0.9531 31 1 5.1922 -1.9752 0.2329 32 1 2.8165 -3.6794 1.0651 33 1 4.2960 -4.4242 0.4301 34 1 4.2768 -4.3527 2.8519 35 1 5.5938 -3.3733 2.1671 36 1 1.2185 -2.0316 6.2067 37 1 -0.0904 -1.0969 7.7353 38 1 -1.5447 -0.0908 9.4459 39 1 -1.8301 2.3510 9.5420 40 1 -0.6569 3.7988 7.9358 41 1 0.8081 2.8100 6.2243 42 1 4.4871 -0.3397 3.5658 43 1 5.5307 -1.0504 2.3223 44 1 4.2583 0.5215 1.0922 45 1 2.7706 0.1783 2.0074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981532123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = 74.699674 kcal Electronic energy + Delta-G solvation = -30466.902853 eV Core-core repulsion = 26453.229730 eV Total energy + Delta-G solvation = -4013.673124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.15710 -41.33781 -40.09442 -38.93431 -36.28533 -35.60577 -34.62111 -33.51999 -32.95516 -31.92204 -31.35806 -29.46740 -27.66813 -25.71487 -25.32724 -24.98085 -24.04555 -22.96259 -22.51008 -21.59037 -20.68223 -19.58354 -19.10938 -18.65979 -17.83707 -17.59345 -17.47570 -16.87603 -16.67102 -16.24372 -15.80460 -15.67852 -15.56641 -15.14425 -14.97695 -14.72712 -14.51680 -14.42413 -14.28515 -14.08158 -14.02912 -13.72533 -13.38227 -12.94616 -12.91986 -12.57926 -12.33210 -12.11287 -12.00259 -11.94359 -11.92771 -11.72174 -11.58091 -11.42291 -11.36088 -10.99275 -10.59318 -9.96727 -9.80026 -9.61233 -8.97648 -8.59028 -5.46542 -0.44585 -0.14020 0.39224 1.25925 1.35462 1.41816 1.51513 1.67293 1.85521 1.99842 2.55223 2.75761 2.85169 2.98995 3.09739 3.43274 3.57845 3.80964 3.96472 4.01116 4.02002 4.04547 4.06997 4.08724 4.25981 4.33513 4.44631 4.46565 4.56087 4.57939 4.65315 4.66337 4.80189 4.87890 4.91358 4.93498 4.99443 5.05033 5.18355 5.35545 5.44591 5.45485 5.50259 5.56966 5.80812 5.95267 6.10192 6.26068 6.68255 6.90049 6.92029 7.71575 8.03331 8.82831 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.004129 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.878870 B = 6778.934149 C = 8158.617999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.062 4.062 3 Si 1.081 2.919 4 H -0.278 1.278 5 H -0.312 1.312 6 H -0.254 1.254 7 C -0.330 4.330 8 H 0.027 0.973 9 N -0.610 5.610 10 C 0.153 3.847 11 C -0.158 4.158 12 C 0.127 3.873 13 N -0.570 5.570 14 C 0.603 3.397 15 O -0.549 6.549 16 C -0.087 4.087 17 C -0.144 4.144 18 C 0.051 3.949 19 C -0.050 4.050 20 C -0.100 4.100 21 C -0.118 4.118 22 C -0.103 4.103 23 C -0.123 4.123 24 C -0.111 4.111 25 N -0.364 5.364 26 O 0.121 5.879 27 C 0.091 3.909 28 C 0.100 3.900 29 H 0.245 0.755 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.017 0.983 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.205 0.795 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.124 0.876 44 H 0.054 0.946 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.224 0.089 17.799 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.907 3.093 4 H -0.204 1.204 5 H -0.241 1.241 6 H -0.178 1.178 7 C -0.460 4.460 8 H 0.045 0.955 9 N -0.334 5.334 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.007 3.993 13 N -0.299 5.299 14 C 0.389 3.611 15 O -0.428 6.428 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.105 4.105 19 C -0.051 4.051 20 C -0.119 4.119 21 C -0.135 4.135 22 C -0.121 4.121 23 C -0.141 4.141 24 C -0.131 4.131 25 N -0.065 5.065 26 O 0.048 5.952 27 C -0.035 4.035 28 C -0.025 4.025 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.222 0.778 37 H 0.159 0.841 38 H 0.178 0.822 39 H 0.177 0.823 40 H 0.167 0.833 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.142 0.858 44 H 0.072 0.928 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.123 2.373 17.532 19.467 hybrid contribution -0.942 -2.357 -0.439 2.576 sum 7.181 0.016 17.092 18.539 Atomic orbital electron populations 1.70980 1.08008 1.28311 1.52251 1.27129 0.96102 1.04157 0.98277 0.83662 0.75250 0.73270 0.77104 1.20440 1.24127 1.17814 1.19985 0.93163 0.94788 1.38021 0.95533 1.44059 1.12278 1.33667 1.43412 1.20598 0.93755 0.87247 0.95762 1.21691 0.99632 1.01159 0.97381 1.20951 1.00001 0.86605 0.91717 1.47470 1.38846 1.09667 1.33892 1.16740 0.79212 0.85115 0.80084 1.90768 1.62890 1.24329 1.64838 1.24271 1.04609 0.86443 0.99894 1.23123 0.98074 0.97594 0.97801 1.22392 1.00068 0.90860 0.97146 1.17888 0.98256 0.94056 0.94860 1.21412 0.95966 1.00451 0.94109 1.21496 0.97888 0.95925 0.98216 1.21739 0.98198 0.93699 0.98479 1.21418 0.96349 1.01649 0.94672 1.21338 0.99039 0.93553 0.99145 1.73942 1.09139 1.18261 1.05142 1.85138 1.51517 1.13486 1.45043 1.22125 0.99639 0.82897 0.98808 1.22709 0.98144 0.91989 0.89675 0.94636 0.94164 0.90193 0.96399 0.88541 0.89827 0.86294 0.77759 0.84098 0.82192 0.82270 0.83304 0.86782 0.89284 0.85836 0.92795 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.04 13.70 21.65 0.30 -62.74 16 2 C -0.06 -3.71 5.04 84.86 0.43 -3.28 16 3 Si 1.08 53.98 24.52 68.60 1.68 55.67 16 4 H -0.28 -13.26 6.74 99.48 0.67 -12.59 16 5 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 6 H -0.25 -11.19 6.78 99.48 0.67 -10.52 16 7 C -0.33 -18.91 9.51 84.03 0.80 -18.11 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 9 N -0.61 -27.67 2.32 -697.38 -1.62 -29.29 16 10 C 0.15 5.40 5.63 87.21 0.49 5.89 16 11 C -0.16 -5.06 5.64 29.04 0.16 -4.89 16 12 C 0.13 3.43 5.73 84.23 0.48 3.92 16 13 N -0.57 -18.52 2.46 -834.29 -2.05 -20.58 16 14 C 0.60 22.52 7.66 86.69 0.66 23.19 16 15 O -0.55 -22.27 16.34 -3.97 -0.06 -22.33 16 16 C -0.09 -3.21 6.77 24.34 0.16 -3.04 16 17 C -0.14 -4.71 10.31 22.87 0.24 -4.48 16 18 C 0.05 1.73 7.05 42.98 0.30 2.03 16 19 C -0.05 -1.42 5.88 -20.03 -0.12 -1.53 16 20 C -0.10 -2.19 9.60 22.48 0.22 -1.97 16 21 C -0.12 -1.92 10.03 22.24 0.22 -1.70 16 22 C -0.10 -1.59 10.04 22.31 0.22 -1.37 16 23 C -0.12 -2.40 10.03 22.24 0.22 -2.18 16 24 C -0.11 -2.98 9.70 22.48 0.22 -2.76 16 25 N -0.36 -14.05 11.78 -48.93 -0.58 -14.63 16 26 O 0.12 4.68 6.46 65.78 0.42 5.10 16 27 C 0.09 2.71 4.77 87.67 0.42 3.12 16 28 C 0.10 4.03 4.35 86.69 0.38 4.41 16 29 H 0.24 16.52 8.73 -92.72 -0.81 15.71 16 30 H 0.04 1.51 8.02 -2.39 -0.02 1.50 16 31 H 0.08 2.19 7.59 -2.39 -0.02 2.17 16 32 H 0.02 0.74 7.91 -2.39 -0.02 0.72 16 33 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.08 2.34 7.08 -2.38 -0.02 2.32 16 35 H 0.12 2.15 8.05 -2.39 -0.02 2.13 16 36 H 0.21 5.40 7.57 -2.91 -0.02 5.38 16 37 H 0.14 2.58 7.22 -2.91 -0.02 2.56 16 38 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 41 H 0.11 3.29 7.89 -2.91 -0.02 3.27 16 42 H 0.09 2.53 5.66 -2.39 -0.01 2.52 16 43 H 0.12 2.61 7.73 -2.39 -0.02 2.59 16 44 H 0.05 2.03 6.11 -2.39 -0.01 2.01 16 45 H 0.04 2.12 4.00 -2.39 -0.01 2.11 16 Total: -1.00 -80.57 359.88 4.52 -76.05 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.91 Total: 15.49 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.51 Total: -2.74 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -3.95 Total: -127.24 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.36 Total: -17.23 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 1.68 Total: 55.67 kcal Total: -80.57 4.52 -76.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981532123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.754 kcal (2) G-P(sol) polarization free energy of solvation -80.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds