Wall clock time and date at job start Sat Apr 11 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99842 * 2 1 4 4 H 1.48500 * 109.46997 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47173 * 239.99546 * 3 2 1 6 6 H 1.48501 * 109.47090 * 119.99504 * 3 2 1 7 7 C 1.38808 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99691 * 214.38655 * 7 2 1 9 9 N 1.36931 * 120.00070 * 34.38815 * 7 2 1 10 10 C 1.43471 * 118.93953 * 203.85452 * 9 7 2 11 11 C 1.53790 * 107.96121 * 273.61522 * 10 9 7 12 12 C 1.47137 * 111.83950 * 281.66167 * 11 10 9 13 13 N 1.48218 * 110.34263 * 58.29921 * 12 11 10 14 14 C 1.34776 * 119.96828 * 102.46661 * 13 12 11 15 15 O 1.21492 * 120.00193 * 353.62282 * 14 13 12 16 16 C 1.48291 * 120.00059 * 173.62407 * 14 13 12 17 17 C 1.35676 * 118.86674 * 203.06223 * 16 14 13 18 18 C 1.42061 * 119.93069 * 179.79284 * 17 16 14 19 19 O 1.21929 * 121.06768 * 180.23970 * 18 17 16 20 20 C 1.47219 * 117.86165 * 0.43966 * 18 17 16 21 21 C 1.39578 * 121.35118 * 179.82776 * 20 18 17 22 22 C 1.36644 * 119.69327 * 179.97438 * 21 20 18 23 23 C 1.38885 * 120.55571 * 0.02562 * 22 21 20 24 24 C 1.37710 * 120.71944 * 359.97438 * 23 22 21 25 25 C 1.39294 * 119.72326 * 0.02562 * 24 23 22 26 26 N 1.36461 * 118.86835 * 23.32781 * 16 14 13 27 27 H 0.97001 * 119.18455 * 359.95936 * 26 16 14 28 28 C 1.43620 * 120.06211 * 282.49342 * 13 12 11 29 29 C 1.48850 * 118.94161 * 23.59163 * 9 7 2 30 30 H 0.97000 * 119.99980 * 185.97761 * 1 2 3 31 31 H 1.08997 * 109.76205 * 33.23113 * 10 9 7 32 32 H 1.08999 * 109.75847 * 153.94500 * 10 9 7 33 33 H 1.08995 * 109.01326 * 42.27169 * 11 10 9 34 34 H 1.08997 * 109.00759 * 161.05953 * 11 10 9 35 35 H 1.09005 * 109.32793 * 178.56659 * 12 11 10 36 36 H 1.09003 * 109.32932 * 298.21097 * 12 11 10 37 37 H 1.08002 * 120.03658 * 0.02562 * 17 16 14 38 38 H 1.08003 * 120.15759 * 359.95341 * 21 20 18 39 39 H 1.07998 * 119.72085 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.63730 * 179.97438 * 23 22 21 41 41 H 1.08007 * 120.13918 * 180.02562 * 24 23 22 42 42 H 1.09003 * 108.87296 * 211.44073 * 28 13 12 43 43 H 1.08992 * 108.87154 * 329.97885 * 28 13 12 44 44 H 1.09006 * 109.48035 * 260.62122 * 29 9 7 45 45 H 1.09001 * 109.48124 * 20.65269 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 -1.2124 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 2.9488 -1.2836 0.5289 9 7 1.5051 -2.2847 -0.6687 10 6 1.9082 -3.6009 -0.2644 11 6 3.2144 -3.9438 -1.0001 12 6 2.9684 -4.3451 -2.3941 13 7 2.2680 -3.2631 -3.1258 14 6 2.9537 -2.4691 -3.9719 15 8 4.1626 -2.5633 -4.0482 16 6 2.2327 -1.4805 -4.8097 17 6 2.8174 -1.0395 -5.9518 18 6 2.1450 -0.0958 -6.7736 19 8 2.6492 0.3112 -7.8065 20 6 0.8218 0.3783 -6.3359 21 6 0.0987 1.3076 -7.0855 22 6 -1.1268 1.7240 -6.6476 23 6 -1.6584 1.2308 -5.4630 24 6 -0.9623 0.3134 -4.7078 25 6 0.2889 -0.1254 -5.1347 26 7 1.0065 -1.0415 -4.4025 27 1 0.6318 -1.3843 -3.5761 28 6 0.8593 -3.0595 -2.9337 29 6 0.5509 -2.0582 -1.7885 30 1 -0.4850 -0.8355 0.0875 31 1 2.0756 -3.6205 0.8125 32 1 1.1344 -4.3211 -0.5303 33 1 3.8664 -3.0703 -0.9919 34 1 3.7119 -4.7611 -0.4780 35 1 3.9202 -4.5536 -2.8829 36 1 2.3517 -5.2438 -2.4074 37 1 3.7914 -1.4083 -6.2378 38 1 0.5062 1.6960 -8.0072 39 1 -1.6868 2.4427 -7.2274 40 1 -2.6281 1.5704 -5.1306 41 1 -1.3847 -0.0643 -3.7884 42 1 0.4283 -2.6797 -3.8601 43 1 0.3942 -4.0159 -2.6950 44 1 -0.4686 -2.2098 -1.4336 45 1 0.6595 -1.0385 -2.1580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981575689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:11 Heat of formation + Delta-G solvation = 54.323716 kcal Electronic energy + Delta-G solvation = -31332.588296 eV Core-core repulsion = 27318.031605 eV Total energy + Delta-G solvation = -4014.556691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71219 -39.91135 -38.04929 -37.53255 -37.12073 -34.82912 -33.30640 -32.08212 -31.27193 -30.75766 -29.66657 -28.27196 -26.02100 -24.80495 -24.02408 -23.64043 -22.45055 -22.15640 -20.12063 -19.79256 -18.58036 -18.26713 -17.73112 -17.40061 -16.56812 -16.33821 -15.63963 -15.29775 -14.97770 -14.72849 -14.60724 -14.28168 -13.97136 -13.88566 -13.75139 -13.61722 -13.40373 -13.31679 -13.16683 -12.78811 -12.63815 -12.35883 -12.03908 -11.90928 -11.58816 -11.37396 -11.21312 -10.90083 -10.72386 -10.58314 -10.52251 -10.14781 -10.10092 -9.73677 -9.45941 -9.38651 -9.03181 -8.63910 -8.47858 -7.69415 -7.22632 -6.37505 -3.44006 0.53821 0.92465 1.59141 2.59578 2.85166 3.00872 3.24685 3.37209 3.46122 3.60058 4.01812 4.13847 4.35604 4.45224 4.58221 4.68677 4.85394 4.93881 5.02576 5.08320 5.20093 5.22508 5.24953 5.27946 5.39949 5.49439 5.57794 5.60831 5.77149 5.83524 5.87904 5.92976 6.05655 6.10699 6.11937 6.15427 6.33915 6.36808 6.47504 6.49438 6.55780 6.64035 6.86327 6.93427 7.02178 7.32779 7.83075 7.93474 8.01070 8.29701 8.83518 9.56072 9.92816 10.89954 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.005551 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.093430 B = 5042.945669 C = 6368.885572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.011 4.011 3 Si 1.037 2.963 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.365 4.365 8 H 0.061 0.939 9 N -0.586 5.586 10 C 0.162 3.838 11 C -0.172 4.172 12 C 0.131 3.869 13 N -0.577 5.577 14 C 0.557 3.443 15 O -0.510 6.510 16 C 0.168 3.832 17 C -0.253 4.253 18 C 0.422 3.578 19 O -0.496 6.496 20 C -0.205 4.205 21 C -0.031 4.031 22 C -0.164 4.164 23 C -0.053 4.053 24 C -0.166 4.166 25 C 0.196 3.804 26 N -0.614 5.614 27 H 0.436 0.564 28 C 0.039 3.961 29 C 0.118 3.882 30 H 0.267 0.733 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.159 0.841 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 -5.573 -8.224 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.215 4.215 3 Si 0.866 3.134 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.494 4.494 8 H 0.079 0.921 9 N -0.309 5.309 10 C 0.035 3.965 11 C -0.213 4.213 12 C 0.010 3.990 13 N -0.308 5.308 14 C 0.343 3.657 15 O -0.385 6.385 16 C 0.056 3.944 17 C -0.281 4.281 18 C 0.309 3.691 19 O -0.379 6.379 20 C -0.209 4.209 21 C -0.050 4.050 22 C -0.183 4.183 23 C -0.072 4.072 24 C -0.187 4.187 25 C 0.092 3.908 26 N -0.245 5.245 27 H 0.294 0.706 28 C -0.088 4.088 29 C -0.009 4.009 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.320 -3.821 -8.790 10.513 hybrid contribution 0.030 -1.675 0.797 1.855 sum -4.290 -5.496 -7.993 10.607 Atomic orbital electron populations 1.70890 1.06758 1.29829 1.46091 1.25627 0.96018 1.01225 0.98629 0.83926 0.75674 0.76921 0.76849 1.20823 1.21878 1.21551 1.19876 1.04440 0.91326 1.33734 0.92145 1.43580 1.52587 1.02067 1.32627 1.20345 0.92575 0.86524 0.97089 1.21843 1.02241 1.01936 0.95266 1.20723 0.97636 0.87476 0.93119 1.47335 1.08979 1.32884 1.41591 1.18112 0.87068 0.80607 0.79950 1.90788 1.12378 1.67902 1.67442 1.20173 0.85110 0.94314 0.94814 1.22311 1.03868 1.05186 0.96701 1.18441 0.84883 0.80574 0.85158 1.90675 1.67664 1.55492 1.24080 1.20356 0.99121 1.04447 0.96981 1.20808 0.93143 0.92745 0.98273 1.20846 0.96726 1.02840 0.97878 1.21131 0.99184 0.93630 0.93290 1.20829 0.93633 1.02017 1.02202 1.18072 0.91928 0.89734 0.91048 1.43838 1.15857 1.38758 1.26065 0.70559 1.22882 0.82056 1.03314 1.00510 1.22432 0.94530 0.96454 0.87528 0.92256 0.92839 0.94784 0.90737 0.91871 0.89734 0.91287 0.82313 0.84611 0.85391 0.84932 0.84403 0.89351 0.89485 0.93276 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.71 12.65 55.49 0.70 -23.01 16 2 C -0.01 -0.29 4.37 -17.43 -0.08 -0.37 16 3 Si 1.04 24.37 30.03 -169.99 -5.11 19.26 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.37 -9.22 9.05 -15.06 -0.14 -9.36 16 8 H 0.06 1.61 8.02 -52.48 -0.42 1.18 16 9 N -0.59 -12.40 2.41 -171.79 -0.41 -12.82 16 10 C 0.16 2.87 5.63 -5.23 -0.03 2.84 16 11 C -0.17 -2.74 5.64 -29.14 -0.16 -2.90 16 12 C 0.13 1.87 5.66 -5.91 -0.03 1.84 16 13 N -0.58 -9.20 2.46 -177.47 -0.44 -9.64 16 14 C 0.56 10.08 7.55 -12.13 -0.09 9.99 16 15 O -0.51 -10.39 15.90 5.37 0.09 -10.31 16 16 C 0.17 2.89 6.37 -82.59 -0.53 2.37 16 17 C -0.25 -4.42 9.46 -39.03 -0.37 -4.79 16 18 C 0.42 7.55 6.97 -34.47 -0.24 7.31 16 19 O -0.50 -9.80 17.34 4.98 0.09 -9.72 16 20 C -0.20 -3.29 5.89 -104.81 -0.62 -3.91 16 21 C -0.03 -0.42 9.61 -39.66 -0.38 -0.81 16 22 C -0.16 -1.85 9.97 -39.92 -0.40 -2.25 16 23 C -0.05 -0.61 10.01 -39.54 -0.40 -1.00 16 24 C -0.17 -2.24 9.91 -39.38 -0.39 -2.63 16 25 C 0.20 3.05 6.66 -84.00 -0.56 2.49 16 26 N -0.61 -9.92 3.95 -7.43 -0.03 -9.95 16 27 H 0.44 6.93 1.61 -40.94 -0.07 6.87 16 28 C 0.04 0.56 4.73 -4.39 -0.02 0.54 16 29 C 0.12 2.18 4.55 -1.57 -0.01 2.17 16 30 H 0.27 6.98 7.04 -40.82 -0.29 6.70 16 31 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 32 H 0.03 0.53 7.59 -51.93 -0.39 0.13 16 33 H 0.07 1.47 7.91 -51.93 -0.41 1.06 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.23 7.20 -51.93 -0.37 0.85 16 36 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.16 2.72 7.67 -52.49 -0.40 2.32 16 38 H 0.14 1.73 7.78 -52.48 -0.41 1.32 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.09 1.17 4.81 -51.93 -0.25 0.92 16 43 H 0.09 1.04 7.72 -51.93 -0.40 0.64 16 44 H 0.05 0.90 7.41 -51.93 -0.38 0.52 16 45 H 0.07 1.55 5.14 -51.93 -0.27 1.29 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -30.90 356.37 -9.57 -40.46 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.39 Total: 8.80 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -4.44 Total: 1.54 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.18 Total: -55.41 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.17 Total: -20.02 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.11 Total: 19.26 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.90 -9.57 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981575689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.785 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds