Wall clock time and date at job start Sat Apr 11 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99776 * 2 1 4 4 H 1.48506 * 109.47228 * 84.60598 * 3 2 1 5 5 H 1.48506 * 109.47121 * 324.60574 * 3 2 1 6 6 H 1.48502 * 109.47096 * 204.60728 * 3 2 1 7 7 C 1.38813 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99658 * 200.71827 * 7 2 1 9 9 N 1.36933 * 119.99957 * 20.72608 * 7 2 1 10 10 C 1.43467 * 118.93854 * 202.89286 * 9 7 2 11 11 C 1.53803 * 107.95386 * 273.60942 * 10 9 7 12 12 C 1.47139 * 111.83949 * 281.66343 * 11 10 9 13 13 N 1.48212 * 110.34325 * 58.29827 * 12 11 10 14 14 C 1.34773 * 119.96679 * 102.51251 * 13 12 11 15 15 O 1.21650 * 119.99930 * 354.20373 * 14 13 12 16 16 C 1.47103 * 120.00035 * 174.20354 * 14 13 12 17 17 C 1.42462 * 128.38520 * 301.34440 * 16 14 13 18 18 N 1.29881 * 106.41329 * 179.97438 * 17 16 14 19 19 O 1.20744 * 112.75716 * 359.97438 * 18 17 16 20 20 C 1.34244 * 111.94957 * 359.75905 * 19 18 17 21 21 C 1.47548 * 127.17550 * 180.25960 * 20 19 18 22 22 C 1.39705 * 120.15732 * 173.13500 * 21 20 19 23 23 C 1.37926 * 119.84078 * 179.69566 * 22 21 20 24 24 C 1.38377 * 120.15801 * 0.57548 * 23 22 21 25 25 C 1.38384 * 120.31600 * 359.72219 * 24 23 22 26 26 C 1.37924 * 120.15742 * 359.97438 * 25 24 23 27 27 C 1.43621 * 120.06208 * 282.49239 * 13 12 11 28 28 C 1.48859 * 118.94217 * 22.61550 * 9 7 2 29 29 H 0.96994 * 120.00165 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.76619 * 33.21556 * 10 9 7 31 31 H 1.08996 * 109.76311 * 153.94381 * 10 9 7 32 32 H 1.08993 * 109.00794 * 42.27418 * 11 10 9 33 33 H 1.09005 * 109.00364 * 161.06056 * 11 10 9 34 34 H 1.08996 * 109.32436 * 178.56862 * 12 11 10 35 35 H 1.09011 * 109.32265 * 298.20924 * 12 11 10 36 36 H 1.08007 * 126.79277 * 359.97438 * 17 16 14 37 37 H 1.08009 * 120.07804 * 359.97438 * 22 21 20 38 38 H 1.08003 * 119.91710 * 180.30078 * 23 22 21 39 39 H 1.07996 * 119.84450 * 179.73888 * 24 23 22 40 40 H 1.07998 * 119.91997 * 179.97438 * 25 24 23 41 41 H 1.08007 * 120.07798 * 180.02562 * 26 25 24 42 42 H 1.08995 * 108.87404 * 211.44271 * 27 13 12 43 43 H 1.09000 * 108.87489 * 329.98654 * 27 13 12 44 44 H 1.08996 * 109.48022 * 260.62741 * 28 9 7 45 45 H 1.08996 * 109.47775 * 20.66628 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3837 2.1123 1.3939 5 1 1.5092 2.6171 -0.8110 6 1 3.6001 1.4100 -0.5830 7 6 2.0103 -1.2021 0.0005 8 1 3.0379 -1.2322 0.3314 9 7 1.3921 -2.3498 -0.4186 10 6 1.8983 -3.6148 0.0306 11 6 3.0193 -4.0452 -0.9303 12 6 2.4833 -4.5984 -2.1840 13 7 1.6200 -3.6010 -2.8597 14 6 2.0896 -2.9112 -3.9180 15 8 3.2530 -3.0290 -4.2531 16 6 1.1952 -2.0157 -4.6678 17 6 -0.0193 -2.3378 -5.3393 18 7 -0.4574 -1.2300 -5.8568 19 8 0.2637 -0.2894 -5.6261 20 6 1.3281 -0.6423 -4.8880 21 6 2.4135 0.2363 -4.4116 22 6 3.3794 -0.2561 -3.5305 23 6 4.3948 0.5691 -3.0943 24 6 4.4515 1.8853 -3.5179 25 6 3.4946 2.3815 -4.3858 26 6 2.4771 1.5660 -4.8351 27 6 0.2833 -3.3694 -2.3881 28 6 0.2127 -2.2446 -1.3208 29 1 -0.4850 0.8400 -0.0004 30 1 2.2966 -3.5149 1.0403 31 1 1.0991 -4.3559 0.0214 32 1 3.6407 -3.1800 -1.1612 33 1 3.6339 -4.8019 -0.4426 34 1 3.3095 -4.8656 -2.8427 35 1 1.8956 -5.4895 -1.9628 36 1 -0.4838 -3.3107 -5.4050 37 1 3.3337 -1.2818 -3.1953 38 1 5.1450 0.1884 -2.4170 39 1 5.2464 2.5281 -3.1699 40 1 3.5448 3.4099 -4.7120 41 1 1.7312 1.9546 -5.5128 42 1 -0.3461 -3.0931 -3.2339 43 1 -0.1004 -4.2904 -1.9494 44 1 -0.7018 -2.3497 -0.7372 45 1 0.2190 -1.2733 -1.8153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000983482221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:26 Heat of formation + Delta-G solvation = 98.858616 kcal Electronic energy + Delta-G solvation = -32070.992203 eV Core-core repulsion = 28058.366690 eV Total energy + Delta-G solvation = -4012.625513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.73755 -39.88337 -38.73814 -37.03717 -34.38782 -33.98062 -32.91162 -32.49785 -30.90359 -30.70372 -29.41311 -27.70806 -25.89127 -24.49215 -23.80813 -23.44104 -22.30439 -21.70400 -21.07629 -19.80820 -18.93729 -17.82199 -17.53587 -17.13190 -16.34480 -16.13256 -15.96251 -15.38514 -14.88418 -14.54376 -14.43328 -14.03300 -13.90495 -13.66433 -13.44836 -13.13256 -13.00728 -12.90924 -12.70961 -12.47613 -12.31509 -11.91131 -11.52086 -11.41156 -11.10617 -11.07678 -10.77926 -10.70831 -10.51762 -10.39028 -10.29007 -10.25316 -9.99183 -9.83887 -9.74302 -9.63992 -8.65310 -8.45976 -8.21249 -8.08090 -6.77276 -5.82765 -3.19530 0.68198 1.68617 2.05092 2.17712 2.84505 2.96875 3.36010 3.46217 3.47303 3.52155 4.08985 4.33157 4.50422 4.54349 4.89086 5.05319 5.15738 5.19393 5.25245 5.32506 5.36499 5.44099 5.51997 5.58477 5.66461 5.70489 5.81798 5.85345 5.90696 6.00316 6.06564 6.09661 6.23479 6.27931 6.38478 6.44887 6.59193 6.69125 6.76431 6.77118 6.82113 6.98417 7.15037 7.28270 7.40262 7.77343 7.80140 8.27118 8.38779 8.43308 9.16707 9.86542 10.30878 11.25701 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.007870 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.050700 B = 3556.823692 C = 4999.190830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.012 3.988 3 Si 0.878 3.122 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.162 3.838 11 C -0.171 4.171 12 C 0.131 3.869 13 N -0.571 5.571 14 C 0.602 3.398 15 O -0.540 6.540 16 C -0.235 4.235 17 C 0.028 3.972 18 N -0.364 5.364 19 O 0.105 5.895 20 C 0.083 3.917 21 C -0.041 4.041 22 C -0.052 4.052 23 C -0.111 4.111 24 C -0.101 4.101 25 C -0.133 4.133 26 C -0.090 4.090 27 C 0.075 3.925 28 C 0.167 3.833 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.197 0.803 37 H 0.144 0.856 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -3.780 -7.967 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.707 3.293 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.033 3.967 11 C -0.212 4.212 12 C 0.010 3.990 13 N -0.302 5.302 14 C 0.389 3.611 15 O -0.419 6.419 16 C -0.242 4.242 17 C -0.151 4.151 18 N -0.068 5.068 19 O 0.042 5.958 20 C 0.018 3.982 21 C -0.042 4.042 22 C -0.070 4.070 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.151 4.151 26 C -0.108 4.108 27 C -0.050 4.050 28 C 0.041 3.959 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.214 0.786 37 H 0.162 0.838 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.636 -3.430 -8.861 9.860 hybrid contribution 0.649 0.581 0.657 1.091 sum 3.285 -2.850 -8.204 9.285 Atomic orbital electron populations 1.70051 1.05237 1.25432 1.53915 1.24797 0.94991 0.98021 1.00884 0.86642 0.80530 0.84672 0.77467 1.21949 1.21475 1.19098 1.19065 0.94200 0.85681 1.39341 0.91745 1.43665 1.33739 1.01184 1.52426 1.20284 0.93325 0.88160 0.94919 1.21882 1.01278 1.01096 0.96924 1.20642 0.94264 0.89511 0.94628 1.47300 1.15282 1.39012 1.28557 1.16735 0.85873 0.78678 0.79790 1.90781 1.16726 1.65048 1.69360 1.21318 0.99885 0.94018 1.08962 1.24815 0.93460 0.98985 0.97874 1.73486 1.15772 0.96191 1.21335 1.84776 1.26201 1.31709 1.53066 1.22935 0.89754 0.92158 0.93368 1.17556 0.93239 0.92531 1.00910 1.21608 0.91501 1.01508 0.92383 1.21049 0.98729 0.93676 0.99472 1.21341 0.98511 0.95644 0.96440 1.20965 0.95314 0.99698 0.99091 1.21217 0.98266 0.92163 0.99195 1.22355 0.82133 1.01363 0.99160 1.21909 0.89700 0.95503 0.88799 0.93762 0.93545 0.94870 0.91189 0.92424 0.90280 0.91714 0.78645 0.83809 0.85430 0.85939 0.85645 0.85338 0.91514 0.91723 0.94021 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.23 11.15 55.49 0.62 -24.61 16 2 C 0.01 0.31 4.80 -17.43 -0.08 0.23 16 3 Si 0.88 21.24 29.60 -169.99 -5.03 16.21 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.08 6.51 56.52 0.37 -5.71 16 7 C -0.25 -6.51 9.26 -15.06 -0.14 -6.65 16 8 H 0.06 1.67 7.91 -52.49 -0.42 1.26 16 9 N -0.59 -13.38 2.54 -171.78 -0.44 -13.81 16 10 C 0.16 3.06 5.63 -5.23 -0.03 3.03 16 11 C -0.17 -2.83 5.64 -29.13 -0.16 -2.99 16 12 C 0.13 1.99 5.67 -5.91 -0.03 1.96 16 13 N -0.57 -9.76 2.46 -177.82 -0.44 -10.20 16 14 C 0.60 11.16 5.64 -12.67 -0.07 11.09 16 15 O -0.54 -11.04 14.79 5.23 0.08 -10.97 16 16 C -0.23 -4.16 5.06 -104.12 -0.53 -4.69 16 17 C 0.03 0.42 10.30 -16.75 -0.17 0.25 16 18 N -0.36 -6.00 11.98 30.84 0.37 -5.63 16 19 O 0.11 1.81 11.03 16.68 0.18 1.99 16 20 C 0.08 1.51 7.24 -35.23 -0.26 1.25 16 21 C -0.04 -0.76 5.87 -105.01 -0.62 -1.37 16 22 C -0.05 -1.01 9.16 -39.15 -0.36 -1.36 16 23 C -0.11 -1.95 9.44 -39.64 -0.37 -2.32 16 24 C -0.10 -1.54 10.04 -39.48 -0.40 -1.94 16 25 C -0.13 -1.93 10.03 -39.64 -0.40 -2.32 16 26 C -0.09 -1.43 9.74 -39.15 -0.38 -1.81 16 27 C 0.08 1.28 5.15 -4.39 -0.02 1.25 16 28 C 0.17 3.65 5.25 -1.56 -0.01 3.64 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.05 0.91 8.02 -51.93 -0.42 0.49 16 31 H 0.03 0.58 7.59 -51.93 -0.39 0.18 16 32 H 0.07 1.38 7.91 -51.93 -0.41 0.96 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.21 7.19 -51.93 -0.37 0.84 16 35 H 0.06 0.83 8.05 -51.92 -0.42 0.41 16 36 H 0.20 2.25 7.97 -52.48 -0.42 1.83 16 37 H 0.14 3.07 4.29 -52.48 -0.23 2.84 16 38 H 0.13 2.08 8.06 -52.48 -0.42 1.65 16 39 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.13 1.73 7.99 -52.48 -0.42 1.31 16 42 H 0.07 1.05 5.15 -51.93 -0.27 0.78 16 43 H 0.06 0.96 7.72 -51.93 -0.40 0.56 16 44 H 0.04 0.99 8.03 -51.93 -0.42 0.57 16 45 H 0.07 1.85 6.52 -51.93 -0.34 1.51 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -30.31 363.15 -8.99 -39.30 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.77 Total: 5.00 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -4.03 Total: -2.76 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.11 Total: -54.26 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.26 Total: -8.98 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.31 -8.99 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983482221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.162 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds