Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99776 * 2 1 4 4 H 1.48506 * 109.47228 * 84.60598 * 3 2 1 5 5 H 1.48506 * 109.47121 * 324.60574 * 3 2 1 6 6 H 1.48502 * 109.47096 * 204.60728 * 3 2 1 7 7 C 1.38813 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99658 * 200.71827 * 7 2 1 9 9 N 1.36933 * 119.99957 * 20.72608 * 7 2 1 10 10 C 1.43467 * 118.93854 * 202.89286 * 9 7 2 11 11 C 1.53803 * 107.95386 * 273.60942 * 10 9 7 12 12 C 1.47139 * 111.83949 * 281.66343 * 11 10 9 13 13 N 1.48212 * 110.34325 * 58.29827 * 12 11 10 14 14 C 1.34773 * 119.96679 * 102.51251 * 13 12 11 15 15 O 1.21650 * 119.99930 * 354.20373 * 14 13 12 16 16 C 1.47103 * 120.00035 * 174.20354 * 14 13 12 17 17 C 1.42462 * 128.38520 * 301.34440 * 16 14 13 18 18 N 1.29881 * 106.41329 * 179.97438 * 17 16 14 19 19 O 1.20744 * 112.75716 * 359.97438 * 18 17 16 20 20 C 1.34244 * 111.94957 * 359.75905 * 19 18 17 21 21 C 1.47548 * 127.17550 * 180.25960 * 20 19 18 22 22 C 1.39705 * 120.15732 * 173.13500 * 21 20 19 23 23 C 1.37926 * 119.84078 * 179.69566 * 22 21 20 24 24 C 1.38377 * 120.15801 * 0.57548 * 23 22 21 25 25 C 1.38384 * 120.31600 * 359.72219 * 24 23 22 26 26 C 1.37924 * 120.15742 * 359.97438 * 25 24 23 27 27 C 1.43621 * 120.06208 * 282.49239 * 13 12 11 28 28 C 1.48859 * 118.94217 * 22.61550 * 9 7 2 29 29 H 0.96994 * 120.00165 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.76619 * 33.21556 * 10 9 7 31 31 H 1.08996 * 109.76311 * 153.94381 * 10 9 7 32 32 H 1.08993 * 109.00794 * 42.27418 * 11 10 9 33 33 H 1.09005 * 109.00364 * 161.06056 * 11 10 9 34 34 H 1.08996 * 109.32436 * 178.56862 * 12 11 10 35 35 H 1.09011 * 109.32265 * 298.20924 * 12 11 10 36 36 H 1.08007 * 126.79277 * 359.97438 * 17 16 14 37 37 H 1.08009 * 120.07804 * 359.97438 * 22 21 20 38 38 H 1.08003 * 119.91710 * 180.30078 * 23 22 21 39 39 H 1.07996 * 119.84450 * 179.73888 * 24 23 22 40 40 H 1.07998 * 119.91997 * 179.97438 * 25 24 23 41 41 H 1.08007 * 120.07798 * 180.02562 * 26 25 24 42 42 H 1.08995 * 108.87404 * 211.44271 * 27 13 12 43 43 H 1.09000 * 108.87489 * 329.98654 * 27 13 12 44 44 H 1.08996 * 109.48022 * 260.62741 * 28 9 7 45 45 H 1.08996 * 109.47775 * 20.66628 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3837 2.1123 1.3939 5 1 1.5092 2.6171 -0.8110 6 1 3.6001 1.4100 -0.5830 7 6 2.0103 -1.2021 0.0005 8 1 3.0379 -1.2322 0.3314 9 7 1.3921 -2.3498 -0.4186 10 6 1.8983 -3.6148 0.0306 11 6 3.0193 -4.0452 -0.9303 12 6 2.4833 -4.5984 -2.1840 13 7 1.6200 -3.6010 -2.8597 14 6 2.0896 -2.9112 -3.9180 15 8 3.2530 -3.0290 -4.2531 16 6 1.1952 -2.0157 -4.6678 17 6 -0.0193 -2.3378 -5.3393 18 7 -0.4574 -1.2300 -5.8568 19 8 0.2637 -0.2894 -5.6261 20 6 1.3281 -0.6423 -4.8880 21 6 2.4135 0.2363 -4.4116 22 6 3.3794 -0.2561 -3.5305 23 6 4.3948 0.5691 -3.0943 24 6 4.4515 1.8853 -3.5179 25 6 3.4946 2.3815 -4.3858 26 6 2.4771 1.5660 -4.8351 27 6 0.2833 -3.3694 -2.3881 28 6 0.2127 -2.2446 -1.3208 29 1 -0.4850 0.8400 -0.0004 30 1 2.2966 -3.5149 1.0403 31 1 1.0991 -4.3559 0.0214 32 1 3.6407 -3.1800 -1.1612 33 1 3.6339 -4.8019 -0.4426 34 1 3.3095 -4.8656 -2.8427 35 1 1.8956 -5.4895 -1.9628 36 1 -0.4838 -3.3107 -5.4050 37 1 3.3337 -1.2818 -3.1953 38 1 5.1450 0.1884 -2.4170 39 1 5.2464 2.5281 -3.1699 40 1 3.5448 3.4099 -4.7120 41 1 1.7312 1.9546 -5.5128 42 1 -0.3461 -3.0931 -3.2339 43 1 -0.1004 -4.2904 -1.9494 44 1 -0.7018 -2.3497 -0.7372 45 1 0.2190 -1.2733 -1.8153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000983482221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = 82.682742 kcal Electronic energy + Delta-G solvation = -32071.693641 eV Core-core repulsion = 28058.366690 eV Total energy + Delta-G solvation = -4013.326952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.01175 -41.29284 -40.00734 -38.60282 -36.00815 -35.35582 -34.19532 -33.99736 -32.70641 -31.96938 -30.70628 -29.32679 -27.45299 -25.91981 -25.50228 -24.74737 -23.65895 -23.01809 -22.39839 -21.45246 -20.29414 -19.22491 -18.83804 -18.65807 -17.97189 -17.55359 -17.23732 -16.86728 -16.46012 -15.94577 -15.89308 -15.58239 -15.45427 -15.09111 -14.91067 -14.56873 -14.32074 -14.25615 -14.04218 -13.97157 -13.80239 -13.47247 -13.08920 -12.87588 -12.79417 -12.47706 -12.36615 -12.32133 -12.10509 -11.94945 -11.79895 -11.75317 -11.52068 -11.43568 -11.27556 -11.07806 -10.44152 -9.94718 -9.63951 -9.40087 -8.67022 -7.85194 -5.21477 -0.64144 0.40354 0.79463 0.86740 1.38577 1.45177 1.45683 1.53035 1.62927 2.19676 2.53564 2.80048 3.12814 3.27410 3.30760 3.55579 3.71052 3.81974 3.93174 3.97867 4.09736 4.15000 4.20446 4.23061 4.31595 4.42960 4.48787 4.54897 4.58709 4.70531 4.72869 4.82231 4.87221 4.94692 5.01671 5.06543 5.24039 5.28162 5.33942 5.41013 5.47694 5.53036 5.58960 5.71361 5.75865 5.90560 6.36049 6.40298 6.96158 7.03789 7.19649 7.98145 8.36349 9.19921 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.007870 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.050700 B = 3556.823692 C = 4999.190830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.033 4.033 3 Si 0.918 3.082 4 H -0.298 1.298 5 H -0.299 1.299 6 H -0.249 1.249 7 C -0.243 4.243 8 H 0.056 0.944 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.155 4.155 12 C 0.127 3.873 13 N -0.570 5.570 14 C 0.602 3.398 15 O -0.565 6.565 16 C -0.255 4.255 17 C 0.045 3.955 18 N -0.373 5.373 19 O 0.097 5.903 20 C 0.070 3.930 21 C -0.065 4.065 22 C -0.078 4.078 23 C -0.131 4.131 24 C -0.101 4.101 25 C -0.127 4.127 26 C -0.095 4.095 27 C 0.088 3.912 28 C 0.177 3.823 29 H 0.243 0.757 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.236 0.764 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.150 0.850 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.019 0.981 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 -4.673 -8.741 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.229 4.229 3 Si 0.747 3.253 4 H -0.226 1.226 5 H -0.226 1.226 6 H -0.172 1.172 7 C -0.373 4.373 8 H 0.074 0.926 9 N -0.323 5.323 10 C 0.029 3.971 11 C -0.196 4.196 12 C 0.006 3.994 13 N -0.299 5.299 14 C 0.390 3.610 15 O -0.447 6.447 16 C -0.262 4.262 17 C -0.134 4.134 18 N -0.079 5.079 19 O 0.038 5.962 20 C 0.005 3.995 21 C -0.066 4.066 22 C -0.097 4.097 23 C -0.149 4.149 24 C -0.119 4.119 25 C -0.145 4.145 26 C -0.114 4.114 27 C -0.038 4.038 28 C 0.051 3.949 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.252 0.748 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.174 0.826 40 H 0.184 0.816 41 H 0.168 0.832 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.037 0.963 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.955 -4.347 -9.630 10.971 hybrid contribution 0.617 0.822 0.936 1.390 sum 3.572 -3.525 -8.694 10.038 Atomic orbital electron populations 1.70170 1.06170 1.25053 1.56157 1.25254 0.95483 1.00091 1.02068 0.85983 0.80495 0.82018 0.76798 1.22575 1.22604 1.17221 1.19199 0.93788 0.86954 1.37409 0.92592 1.43869 1.33766 1.01734 1.52918 1.20482 0.94602 0.87068 0.94938 1.21675 1.00084 1.00537 0.97314 1.20844 0.94860 0.90123 0.93528 1.47394 1.15506 1.38919 1.28079 1.16872 0.85559 0.78475 0.80112 1.90755 1.17806 1.65843 1.70248 1.21479 1.00950 0.93995 1.09758 1.25362 0.92149 0.99994 0.95929 1.73462 1.15940 0.96530 1.22003 1.84763 1.26098 1.32106 1.53269 1.23158 0.90028 0.92741 0.93542 1.17786 0.93416 0.93887 1.01503 1.21504 0.93216 1.00872 0.94075 1.21236 0.98596 0.94900 1.00154 1.21763 0.99381 0.94902 0.95814 1.21474 0.93959 1.01268 0.97759 1.21597 0.99195 0.91322 0.99241 1.22155 0.82519 1.00831 0.98249 1.21640 0.88428 0.95550 0.89314 0.94733 0.94494 0.92342 0.95014 0.89137 0.90205 0.87699 0.74816 0.86398 0.85256 0.82621 0.81642 0.83229 0.90069 0.88272 0.96273 0.95052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.68 11.15 21.65 0.24 -53.44 16 2 C -0.03 -1.83 4.80 84.86 0.41 -1.42 16 3 Si 0.92 44.46 29.60 68.60 2.03 46.49 16 4 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.25 -11.13 6.51 99.48 0.65 -10.49 16 7 C -0.24 -12.75 9.26 84.03 0.78 -11.97 16 8 H 0.06 2.98 7.91 -2.91 -0.02 2.96 16 9 N -0.60 -27.42 2.54 -697.38 -1.77 -29.19 16 10 C 0.16 5.68 5.63 87.21 0.49 6.18 16 11 C -0.16 -4.88 5.64 29.04 0.16 -4.72 16 12 C 0.13 3.53 5.67 84.23 0.48 4.00 16 13 N -0.57 -18.58 2.46 -834.74 -2.05 -20.63 16 14 C 0.60 22.17 5.64 86.57 0.49 22.66 16 15 O -0.57 -23.47 14.79 -4.19 -0.06 -23.53 16 16 C -0.25 -9.00 5.06 -19.54 -0.10 -9.09 16 17 C 0.04 1.30 10.30 86.03 0.89 2.19 16 18 N -0.37 -12.00 11.98 -56.90 -0.68 -12.68 16 19 O 0.10 3.35 11.03 69.91 0.77 4.12 16 20 C 0.07 2.60 7.24 25.09 0.18 2.78 16 21 C -0.06 -2.43 5.87 -20.11 -0.12 -2.54 16 22 C -0.08 -3.14 9.16 22.55 0.21 -2.93 16 23 C -0.13 -4.62 9.44 22.23 0.21 -4.41 16 24 C -0.10 -2.89 10.04 22.34 0.22 -2.67 16 25 C -0.13 -3.40 10.03 22.23 0.22 -3.17 16 26 C -0.10 -2.94 9.74 22.55 0.22 -2.72 16 27 C 0.09 2.80 5.15 87.67 0.45 3.25 16 28 C 0.18 7.78 5.25 86.68 0.45 8.23 16 29 H 0.24 14.02 8.31 -92.71 -0.77 13.24 16 30 H 0.04 1.41 8.02 -2.39 -0.02 1.39 16 31 H 0.06 1.85 7.59 -2.39 -0.02 1.83 16 32 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 33 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.08 2.27 7.19 -2.39 -0.02 2.26 16 35 H 0.10 2.15 8.05 -2.38 -0.02 2.13 16 36 H 0.24 4.60 7.97 -2.91 -0.02 4.58 16 37 H 0.12 5.30 4.29 -2.91 -0.01 5.28 16 38 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.15 3.84 7.99 -2.91 -0.02 3.82 16 42 H 0.08 2.38 5.15 -2.39 -0.01 2.37 16 43 H 0.10 2.54 7.72 -2.39 -0.02 2.52 16 44 H 0.02 0.92 8.03 -2.39 -0.02 0.90 16 45 H 0.03 1.63 6.52 -2.39 -0.02 1.62 16 Total: -1.00 -69.85 363.15 5.08 -64.76 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.96 Total: 20.46 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 5.65 Total: 3.63 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -4.26 Total: -115.94 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.71 Total: -19.41 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -69.85 5.08 -64.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983482221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.446 kcal (2) G-P(sol) polarization free energy of solvation -69.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds