Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46634 * 85.32726 * 3 2 1 5 5 H 1.48492 * 109.47307 * 325.32774 * 3 2 1 6 6 H 1.48499 * 109.47169 * 205.32124 * 3 2 1 7 7 C 1.38806 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00304 * 196.33443 * 7 2 1 9 9 N 1.36940 * 119.99803 * 16.32770 * 7 2 1 10 10 C 1.43464 * 118.93914 * 205.65543 * 9 7 2 11 11 C 1.53788 * 107.95998 * 273.60993 * 10 9 7 12 12 C 1.47140 * 111.84326 * 281.66528 * 11 10 9 13 13 N 1.48211 * 110.34045 * 58.30017 * 12 11 10 14 14 C 1.34783 * 119.97201 * 102.46572 * 13 12 11 15 15 O 1.21607 * 119.99828 * 355.99201 * 14 13 12 16 16 C 1.47464 * 119.99645 * 175.98683 * 14 13 12 17 17 C 1.36233 * 126.36162 * 186.06932 * 16 14 13 18 18 O 1.34277 * 107.12315 * 179.84458 * 17 16 14 19 19 C 1.34479 * 108.16889 * 0.42411 * 18 17 16 20 20 C 1.47864 * 125.49003 * 179.69923 * 19 18 17 21 21 C 1.39545 * 120.14240 * 179.76445 * 20 19 18 22 22 C 1.37973 * 119.85886 * 179.74670 * 21 20 19 23 23 C 1.38353 * 120.13566 * 0.52850 * 22 21 20 24 24 C 1.38343 * 120.29278 * 359.74559 * 23 22 21 25 25 C 1.37973 * 120.14343 * 359.97438 * 24 23 22 26 26 N 1.30899 * 109.01819 * 359.73271 * 19 18 17 27 27 C 1.43626 * 120.05972 * 282.49319 * 13 12 11 28 28 C 1.48854 * 118.94000 * 25.38517 * 9 7 2 29 29 H 0.97008 * 119.99664 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.76468 * 33.23154 * 10 9 7 31 31 H 1.09000 * 109.76078 * 153.94311 * 10 9 7 32 32 H 1.09004 * 109.00902 * 42.27710 * 11 10 9 33 33 H 1.09005 * 109.01071 * 161.06095 * 11 10 9 34 34 H 1.09003 * 109.32337 * 178.56484 * 12 11 10 35 35 H 1.08997 * 109.32863 * 298.20855 * 12 11 10 36 36 H 1.08008 * 126.43959 * 359.97438 * 17 16 14 37 37 H 1.08000 * 120.07199 * 0.02562 * 21 20 19 38 38 H 1.07994 * 119.93432 * 180.25580 * 22 21 20 39 39 H 1.07997 * 119.85371 * 179.76612 * 23 22 21 40 40 H 1.07999 * 119.93286 * 179.97438 * 24 23 22 41 41 H 1.07991 * 120.07920 * 180.02562 * 25 24 23 42 42 H 1.08998 * 108.87437 * 211.44782 * 27 13 12 43 43 H 1.09001 * 108.87040 * 329.87871 * 27 13 12 44 44 H 1.08998 * 109.48293 * 260.62552 * 28 9 7 45 45 H 1.08999 * 109.47841 * 20.65953 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3988 2.1034 1.3955 5 1 1.5006 2.6222 -0.7964 6 1 3.5937 1.4137 -0.5988 7 6 2.0102 -1.2021 -0.0005 8 1 3.0576 -1.2210 0.2625 9 7 1.3670 -2.3639 -0.3345 10 6 1.8689 -3.6069 0.1767 11 6 2.9589 -4.1095 -0.7848 12 6 2.3835 -4.7287 -1.9891 13 7 1.5155 -3.7613 -2.7013 14 6 1.9663 -3.1415 -3.8100 15 8 3.1094 -3.3204 -4.1844 16 6 1.0732 -2.2466 -4.5691 17 6 1.3516 -1.6492 -5.7614 18 8 0.2730 -0.9258 -6.1025 19 6 -0.6497 -1.0667 -5.1344 20 6 -1.9831 -0.4277 -5.1197 21 6 -2.8578 -0.6559 -4.0566 22 6 -4.0985 -0.0525 -4.0463 23 6 -4.4802 0.7687 -5.0923 24 6 -3.6200 0.9946 -6.1520 25 6 -2.3743 0.4017 -6.1716 26 7 -0.1770 -1.8602 -4.2068 27 6 0.1946 -3.4831 -2.2107 28 6 0.1659 -2.2960 -1.2112 29 1 -0.4850 0.8401 0.0004 30 1 2.2945 -3.4527 1.1682 31 1 1.0605 -4.3359 0.2321 32 1 3.5849 -3.2683 -1.0827 33 1 3.5765 -4.8444 -0.2684 34 1 3.1890 -5.0462 -2.6514 35 1 1.7907 -5.5967 -1.7004 36 1 2.2670 -1.7418 -6.3271 37 1 -2.5625 -1.2999 -3.2415 38 1 -4.7749 -0.2249 -3.2223 39 1 -5.4540 1.2357 -5.0814 40 1 -3.9241 1.6363 -6.9657 41 1 -1.7034 0.5791 -6.9990 42 1 -0.4532 -3.2489 -3.0554 43 1 -0.1898 -4.3716 -1.7098 44 1 -0.7344 -2.3533 -0.5994 45 1 0.1714 -1.3560 -1.7629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989501310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = 65.485223 kcal Electronic energy + Delta-G solvation = -30727.428713 eV Core-core repulsion = 26713.356021 eV Total energy + Delta-G solvation = -4014.072692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.23732 -39.53159 -39.03497 -36.88627 -34.90832 -34.10015 -32.61574 -32.15147 -31.02435 -30.74722 -29.06324 -27.47138 -25.68290 -24.04754 -23.84258 -23.48485 -22.62787 -21.44797 -20.88779 -19.65398 -19.11517 -17.52797 -17.01994 -16.66538 -16.42122 -16.05728 -15.89122 -15.53752 -14.94308 -14.81924 -14.34212 -14.07550 -13.74254 -13.65345 -13.50212 -13.47447 -13.04341 -12.95136 -12.85556 -12.42129 -12.16395 -11.85690 -11.55825 -11.36589 -11.20006 -11.14741 -10.97825 -10.71060 -10.48037 -10.27715 -10.09993 -10.05016 -9.75325 -9.74147 -9.58280 -9.42206 -9.04220 -8.38302 -8.28332 -7.92430 -6.59006 -5.70798 -3.11175 0.64315 1.32119 1.51336 2.45066 2.60099 3.37599 3.39860 3.47238 3.51499 3.67559 3.82535 3.94309 4.57079 4.76319 4.83431 4.90453 4.99181 5.04834 5.31469 5.40261 5.42858 5.52793 5.55167 5.63367 5.74062 5.77570 5.80963 5.87657 5.93470 5.98849 5.99872 6.27795 6.31491 6.36299 6.38555 6.43664 6.52306 6.60565 6.77177 6.82190 6.88863 7.01874 7.14259 7.54412 7.60165 7.73232 7.89794 8.03695 8.53979 8.60185 9.30557 9.99169 10.44598 11.36625 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.004949 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.770789 B = 5656.636117 C = 6984.310776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.251 4.251 8 H 0.061 0.939 9 N -0.593 5.593 10 C 0.163 3.837 11 C -0.171 4.171 12 C 0.130 3.870 13 N -0.563 5.563 14 C 0.601 3.399 15 O -0.555 6.555 16 C -0.047 4.047 17 C 0.002 3.998 18 O -0.194 6.194 19 C 0.229 3.771 20 C -0.016 4.016 21 C -0.061 4.061 22 C -0.119 4.119 23 C -0.104 4.104 24 C -0.126 4.126 25 C -0.092 4.092 26 N -0.423 5.423 27 C 0.063 3.937 28 C 0.173 3.827 29 H 0.251 0.749 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.230 0.770 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.998 -3.754 -12.366 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.722 3.278 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.381 4.381 8 H 0.079 0.921 9 N -0.314 5.314 10 C 0.034 3.966 11 C -0.212 4.212 12 C 0.009 3.991 13 N -0.291 5.291 14 C 0.388 3.612 15 O -0.435 6.435 16 C -0.169 4.169 17 C -0.071 4.071 18 O -0.081 6.081 19 C 0.024 3.976 20 C -0.017 4.017 21 C -0.080 4.080 22 C -0.137 4.137 23 C -0.122 4.122 24 C -0.144 4.144 25 C -0.112 4.112 26 N -0.153 5.153 27 C -0.062 4.062 28 C 0.048 3.952 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.125 0.875 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.859 -3.918 -11.992 14.864 hybrid contribution 1.011 1.289 -0.405 1.687 sum -6.848 -2.630 -12.397 14.405 Atomic orbital electron populations 1.70027 1.04971 1.25052 1.54551 1.24902 0.95222 0.97940 1.01100 0.86443 0.79440 0.84423 0.77531 1.21495 1.21684 1.20627 1.19123 0.92465 0.85277 1.41269 0.92101 1.43750 1.31957 1.01666 1.54054 1.20264 0.93485 0.88537 0.94332 1.21882 1.01138 1.00756 0.97394 1.20619 0.94058 0.90178 0.94238 1.47196 1.16584 1.41173 1.24176 1.16725 0.85116 0.78837 0.80474 1.90742 1.17705 1.64512 1.70534 1.21835 0.93542 1.04996 0.96528 1.25227 0.90708 0.93564 0.97607 1.84374 1.22841 1.56296 1.44547 1.23990 0.91818 0.97828 0.83923 1.17287 0.87356 0.99591 0.97441 1.21331 0.92310 0.97772 0.96553 1.21154 0.96320 0.97363 0.98859 1.21346 0.99609 0.97460 0.93806 1.21012 0.93771 1.00517 0.99125 1.21200 0.96790 0.95748 0.97415 1.71230 1.08346 1.11437 1.24247 1.22777 0.82692 0.99873 1.00876 1.21875 0.88394 0.95607 0.89311 0.93916 0.93762 0.94933 0.91300 0.92605 0.90501 0.91886 0.75391 0.83753 0.84966 0.85687 0.85509 0.85360 0.87534 0.93233 0.94637 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 11.04 55.49 0.61 -25.36 16 2 C 0.01 0.19 4.90 -17.43 -0.09 0.10 16 3 Si 0.89 22.64 29.58 -169.99 -5.03 17.61 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.25 -7.06 9.26 -15.06 -0.14 -7.20 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.87 2.53 -171.79 -0.43 -15.30 16 10 C 0.16 3.43 5.63 -5.24 -0.03 3.40 16 11 C -0.17 -3.21 5.64 -29.14 -0.16 -3.38 16 12 C 0.13 2.28 5.68 -5.91 -0.03 2.24 16 13 N -0.56 -11.00 2.46 -177.69 -0.44 -11.43 16 14 C 0.60 12.27 7.66 -12.50 -0.10 12.18 16 15 O -0.56 -12.11 16.36 5.27 0.09 -12.02 16 16 C -0.05 -0.88 6.65 -83.08 -0.55 -1.43 16 17 C 0.00 0.04 11.94 30.01 0.36 0.40 16 18 O -0.19 -2.91 10.45 5.30 0.06 -2.86 16 19 C 0.23 3.72 7.88 -14.01 -0.11 3.61 16 20 C -0.02 -0.22 5.87 -104.98 -0.62 -0.84 16 21 C -0.06 -0.83 9.68 -39.19 -0.38 -1.21 16 22 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16 23 C -0.10 -1.00 10.04 -39.50 -0.40 -1.39 16 24 C -0.13 -1.23 10.03 -39.64 -0.40 -1.62 16 25 C -0.09 -1.07 9.71 -39.19 -0.38 -1.45 16 26 N -0.42 -7.72 6.54 -8.26 -0.05 -7.78 16 27 C 0.06 1.22 4.83 -4.39 -0.02 1.19 16 28 C 0.17 4.10 5.08 -1.57 -0.01 4.10 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.04 0.95 8.02 -51.93 -0.42 0.53 16 31 H 0.03 0.63 7.59 -51.93 -0.39 0.24 16 32 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.33 7.17 -51.93 -0.37 0.96 16 35 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 36 H 0.23 2.66 8.06 -52.48 -0.42 2.24 16 37 H 0.14 2.15 7.82 -52.49 -0.41 1.74 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.13 1.30 7.89 -52.49 -0.41 0.89 16 42 H 0.11 1.99 4.81 -51.93 -0.25 1.74 16 43 H 0.05 0.87 7.73 -51.93 -0.40 0.47 16 44 H 0.04 0.90 7.99 -51.93 -0.42 0.48 16 45 H 0.08 2.21 5.82 -51.93 -0.30 1.91 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -33.21 368.16 -8.97 -42.18 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.87 Total: 2.43 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -3.45 Total: 6.97 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.31 Total: -59.87 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.14 Total: -14.88 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.21 -8.97 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989501310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.666 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds