Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46634 * 85.32726 * 3 2 1 5 5 H 1.48492 * 109.47307 * 325.32774 * 3 2 1 6 6 H 1.48499 * 109.47169 * 205.32124 * 3 2 1 7 7 C 1.38806 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00304 * 196.33443 * 7 2 1 9 9 N 1.36940 * 119.99803 * 16.32770 * 7 2 1 10 10 C 1.43464 * 118.93914 * 205.65543 * 9 7 2 11 11 C 1.53788 * 107.95998 * 273.60993 * 10 9 7 12 12 C 1.47140 * 111.84326 * 281.66528 * 11 10 9 13 13 N 1.48211 * 110.34045 * 58.30017 * 12 11 10 14 14 C 1.34783 * 119.97201 * 102.46572 * 13 12 11 15 15 O 1.21607 * 119.99828 * 355.99201 * 14 13 12 16 16 C 1.47464 * 119.99645 * 175.98683 * 14 13 12 17 17 C 1.36233 * 126.36162 * 186.06932 * 16 14 13 18 18 O 1.34277 * 107.12315 * 179.84458 * 17 16 14 19 19 C 1.34479 * 108.16889 * 0.42411 * 18 17 16 20 20 C 1.47864 * 125.49003 * 179.69923 * 19 18 17 21 21 C 1.39545 * 120.14240 * 179.76445 * 20 19 18 22 22 C 1.37973 * 119.85886 * 179.74670 * 21 20 19 23 23 C 1.38353 * 120.13566 * 0.52850 * 22 21 20 24 24 C 1.38343 * 120.29278 * 359.74559 * 23 22 21 25 25 C 1.37973 * 120.14343 * 359.97438 * 24 23 22 26 26 N 1.30899 * 109.01819 * 359.73271 * 19 18 17 27 27 C 1.43626 * 120.05972 * 282.49319 * 13 12 11 28 28 C 1.48854 * 118.94000 * 25.38517 * 9 7 2 29 29 H 0.97008 * 119.99664 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.76468 * 33.23154 * 10 9 7 31 31 H 1.09000 * 109.76078 * 153.94311 * 10 9 7 32 32 H 1.09004 * 109.00902 * 42.27710 * 11 10 9 33 33 H 1.09005 * 109.01071 * 161.06095 * 11 10 9 34 34 H 1.09003 * 109.32337 * 178.56484 * 12 11 10 35 35 H 1.08997 * 109.32863 * 298.20855 * 12 11 10 36 36 H 1.08008 * 126.43959 * 359.97438 * 17 16 14 37 37 H 1.08000 * 120.07199 * 0.02562 * 21 20 19 38 38 H 1.07994 * 119.93432 * 180.25580 * 22 21 20 39 39 H 1.07997 * 119.85371 * 179.76612 * 23 22 21 40 40 H 1.07999 * 119.93286 * 179.97438 * 24 23 22 41 41 H 1.07991 * 120.07920 * 180.02562 * 25 24 23 42 42 H 1.08998 * 108.87437 * 211.44782 * 27 13 12 43 43 H 1.09001 * 108.87040 * 329.87871 * 27 13 12 44 44 H 1.08998 * 109.48293 * 260.62552 * 28 9 7 45 45 H 1.08999 * 109.47841 * 20.65953 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3988 2.1034 1.3955 5 1 1.5006 2.6222 -0.7964 6 1 3.5937 1.4137 -0.5988 7 6 2.0102 -1.2021 -0.0005 8 1 3.0576 -1.2210 0.2625 9 7 1.3670 -2.3639 -0.3345 10 6 1.8689 -3.6069 0.1767 11 6 2.9589 -4.1095 -0.7848 12 6 2.3835 -4.7287 -1.9891 13 7 1.5155 -3.7613 -2.7013 14 6 1.9663 -3.1415 -3.8100 15 8 3.1094 -3.3204 -4.1844 16 6 1.0732 -2.2466 -4.5691 17 6 1.3516 -1.6492 -5.7614 18 8 0.2730 -0.9258 -6.1025 19 6 -0.6497 -1.0667 -5.1344 20 6 -1.9831 -0.4277 -5.1197 21 6 -2.8578 -0.6559 -4.0566 22 6 -4.0985 -0.0525 -4.0463 23 6 -4.4802 0.7687 -5.0923 24 6 -3.6200 0.9946 -6.1520 25 6 -2.3743 0.4017 -6.1716 26 7 -0.1770 -1.8602 -4.2068 27 6 0.1946 -3.4831 -2.2107 28 6 0.1659 -2.2960 -1.2112 29 1 -0.4850 0.8401 0.0004 30 1 2.2945 -3.4527 1.1682 31 1 1.0605 -4.3359 0.2321 32 1 3.5849 -3.2683 -1.0827 33 1 3.5765 -4.8444 -0.2684 34 1 3.1890 -5.0462 -2.6514 35 1 1.7907 -5.5967 -1.7004 36 1 2.2670 -1.7418 -6.3271 37 1 -2.5625 -1.2999 -3.2415 38 1 -4.7749 -0.2249 -3.2223 39 1 -5.4540 1.2357 -5.0814 40 1 -3.9241 1.6363 -6.9657 41 1 -1.7034 0.5791 -6.9990 42 1 -0.4532 -3.2489 -3.0554 43 1 -0.1898 -4.3716 -1.7098 44 1 -0.7344 -2.3533 -0.5994 45 1 0.1714 -1.3560 -1.7629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989501310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = 45.582419 kcal Electronic energy + Delta-G solvation = -30728.291764 eV Core-core repulsion = 26713.356021 eV Total energy + Delta-G solvation = -4014.935742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.48262 -41.07198 -39.92618 -38.59567 -36.27923 -35.84517 -34.15894 -33.32725 -32.68216 -31.89685 -30.23574 -29.23097 -27.38883 -25.54476 -25.41112 -24.83532 -23.69240 -22.71082 -22.12316 -21.43501 -20.45569 -18.99657 -18.52112 -18.02863 -17.80583 -17.45038 -17.33931 -16.77801 -16.43691 -16.09310 -15.91943 -15.59649 -15.49367 -14.99759 -14.74876 -14.57712 -14.42658 -14.34899 -14.00384 -13.93778 -13.87661 -13.48984 -13.15616 -12.92947 -12.59845 -12.51155 -12.43543 -12.37879 -12.11305 -12.02235 -11.77929 -11.72215 -11.46520 -11.40897 -10.98133 -10.83274 -10.46138 -9.91774 -9.61501 -9.30220 -8.63347 -7.85087 -5.27415 -0.39219 0.25337 0.45129 1.25539 1.34762 1.37284 1.42358 1.45849 1.95369 2.26211 2.47200 2.72238 2.88126 3.27104 3.49910 3.71030 3.81946 4.00850 4.05271 4.07235 4.21515 4.24981 4.33132 4.38798 4.47654 4.49327 4.52070 4.57374 4.64664 4.69497 4.77444 4.89282 4.92829 5.03154 5.11145 5.21528 5.27927 5.35686 5.42744 5.48887 5.51289 5.56259 5.60696 5.79198 5.83694 5.97646 6.32312 6.41001 6.50641 7.06633 7.18943 7.97555 8.36326 9.18454 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.004949 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.770789 B = 5656.636117 C = 6984.310776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.039 4.039 3 Si 0.944 3.056 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.260 4.260 8 H 0.050 0.950 9 N -0.607 5.607 10 C 0.157 3.843 11 C -0.155 4.155 12 C 0.126 3.874 13 N -0.568 5.568 14 C 0.594 3.406 15 O -0.577 6.577 16 C -0.090 4.090 17 C 0.026 3.974 18 O -0.187 6.187 19 C 0.230 3.770 20 C -0.045 4.045 21 C -0.083 4.083 22 C -0.126 4.126 23 C -0.093 4.093 24 C -0.120 4.120 25 C -0.093 4.093 26 N -0.451 5.451 27 C 0.078 3.922 28 C 0.187 3.813 29 H 0.247 0.753 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.263 0.737 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.012 0.988 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.010 -3.631 -13.901 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.235 4.235 3 Si 0.773 3.227 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.391 4.391 8 H 0.068 0.932 9 N -0.330 5.330 10 C 0.030 3.970 11 C -0.195 4.195 12 C 0.005 3.995 13 N -0.296 5.296 14 C 0.383 3.617 15 O -0.459 6.459 16 C -0.211 4.211 17 C -0.048 4.048 18 O -0.072 6.072 19 C 0.024 3.976 20 C -0.046 4.046 21 C -0.102 4.102 22 C -0.143 4.143 23 C -0.111 4.111 24 C -0.138 4.138 25 C -0.113 4.113 26 N -0.180 5.180 27 C -0.047 4.047 28 C 0.061 3.939 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.279 0.721 37 H 0.136 0.864 38 H 0.165 0.835 39 H 0.178 0.822 40 H 0.180 0.820 41 H 0.160 0.840 42 H 0.131 0.869 43 H 0.091 0.909 44 H 0.030 0.970 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.864 -3.833 -13.507 16.604 hybrid contribution 1.266 1.279 0.063 1.801 sum -7.598 -2.554 -13.444 15.652 Atomic orbital electron populations 1.70151 1.05754 1.25157 1.55460 1.25475 0.95989 1.00297 1.01721 0.85623 0.78071 0.81418 0.77601 1.20678 1.21884 1.20967 1.19277 0.92212 0.86845 1.40783 0.93219 1.43977 1.32086 1.02177 1.54737 1.20450 0.94652 0.87522 0.94403 1.21674 1.00027 1.00133 0.97705 1.20814 0.94617 0.90657 0.93393 1.47339 1.16733 1.41352 1.24173 1.17051 0.85131 0.78806 0.80746 1.90704 1.18522 1.65461 1.71247 1.21843 0.94187 1.06896 0.98152 1.25826 0.91127 0.91387 0.96439 1.84401 1.22664 1.56065 1.44114 1.24459 0.92486 0.97141 0.83474 1.17489 0.86723 1.01431 0.98979 1.21277 0.93833 0.98812 0.96293 1.21401 0.95454 0.97363 1.00122 1.21784 1.00884 0.95884 0.92572 1.21459 0.92614 0.99787 0.99892 1.21448 0.97971 0.95026 0.96837 1.71118 1.08663 1.12838 1.25396 1.22506 0.83193 0.98824 1.00156 1.21572 0.86978 0.96101 0.89203 0.94365 0.94513 0.92739 0.95434 0.88988 0.90120 0.88284 0.72103 0.86351 0.83517 0.82170 0.81961 0.84039 0.86879 0.90861 0.97028 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.72 11.04 21.65 0.24 -54.48 16 2 C -0.04 -2.25 4.90 84.86 0.42 -1.83 16 3 Si 0.94 47.64 29.58 68.60 2.03 49.67 16 4 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 6 H -0.28 -14.33 7.11 99.48 0.71 -13.63 16 7 C -0.26 -15.04 9.26 84.03 0.78 -14.26 16 8 H 0.05 2.92 7.88 -2.91 -0.02 2.90 16 9 N -0.61 -31.12 2.53 -697.43 -1.76 -32.88 16 10 C 0.16 6.55 5.63 87.21 0.49 7.04 16 11 C -0.15 -5.67 5.64 29.04 0.16 -5.50 16 12 C 0.13 4.19 5.68 84.23 0.48 4.67 16 13 N -0.57 -22.10 2.46 -834.33 -2.05 -24.15 16 14 C 0.59 24.53 7.66 86.67 0.66 25.19 16 15 O -0.58 -25.34 16.36 -4.05 -0.07 -25.41 16 16 C -0.09 -3.41 6.65 40.50 0.27 -3.14 16 17 C 0.03 0.78 11.94 67.35 0.80 1.59 16 18 O -0.19 -5.52 10.45 -3.94 -0.04 -5.56 16 19 C 0.23 7.63 7.88 87.38 0.69 8.32 16 20 C -0.04 -1.29 5.87 -20.10 -0.12 -1.41 16 21 C -0.08 -2.36 9.68 22.52 0.22 -2.14 16 22 C -0.13 -2.70 10.03 22.23 0.22 -2.48 16 23 C -0.09 -1.51 10.04 22.32 0.22 -1.29 16 24 C -0.12 -1.94 10.03 22.23 0.22 -1.72 16 25 C -0.09 -2.02 9.71 22.52 0.22 -1.80 16 26 N -0.45 -17.09 6.54 -294.26 -1.92 -19.01 16 27 C 0.08 3.05 4.83 87.67 0.42 3.48 16 28 C 0.19 9.15 5.08 86.68 0.44 9.59 16 29 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 30 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 31 H 0.05 2.03 7.59 -2.39 -0.02 2.01 16 32 H 0.03 1.23 7.91 -2.39 -0.02 1.21 16 33 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 34 H 0.08 2.67 7.17 -2.39 -0.02 2.65 16 35 H 0.10 2.62 8.05 -2.39 -0.02 2.60 16 36 H 0.26 5.69 8.06 -2.91 -0.02 5.66 16 37 H 0.12 3.89 7.82 -2.91 -0.02 3.87 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.14 2.58 7.89 -2.92 -0.02 2.56 16 42 H 0.11 4.35 4.81 -2.39 -0.01 4.34 16 43 H 0.07 2.49 7.73 -2.39 -0.02 2.47 16 44 H 0.01 0.62 7.99 -2.39 -0.02 0.60 16 45 H 0.05 2.76 5.82 -2.39 -0.01 2.75 16 Total: -1.00 -75.27 368.16 4.04 -71.23 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 1.01 Total: 16.30 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 6.61 Total: 24.30 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -5.50 Total: -130.53 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.11 Total: -30.97 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -75.27 4.04 -71.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989501310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.816 kcal (2) G-P(sol) polarization free energy of solvation -75.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds