Wall clock time and date at job start Sat Apr 11 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00029 * 2 1 4 4 H 1.48499 * 109.47033 * 274.28183 * 3 2 1 5 5 H 1.48498 * 109.47340 * 34.28280 * 3 2 1 6 6 H 1.48501 * 109.47254 * 154.28281 * 3 2 1 7 7 C 1.38813 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99943 * 189.07027 * 7 2 1 9 9 N 1.36942 * 120.00358 * 9.07475 * 7 2 1 10 10 C 1.47373 * 125.57522 * 10.98863 * 9 7 2 11 11 C 1.56225 * 104.45853 * 154.62959 * 10 9 7 12 12 C 1.54910 * 101.15646 * 38.11746 * 11 10 9 13 13 N 1.46504 * 112.33569 * 85.12937 * 12 11 10 14 14 C 1.34777 * 119.99900 * 64.36413 * 13 12 11 15 15 O 1.21627 * 119.99912 * 359.97438 * 14 13 12 16 16 C 1.47160 * 119.99836 * 180.02562 * 14 13 12 17 17 C 1.35760 * 125.13088 * 179.71677 * 16 14 13 18 18 C 1.46417 * 106.14187 * 180.26695 * 17 16 14 19 19 N 1.32941 * 133.88879 * 180.02562 * 18 17 16 20 20 C 1.31436 * 121.38454 * 179.97438 * 19 18 17 21 21 C 1.38858 * 121.18350 * 359.97046 * 20 19 18 22 22 C 1.38213 * 119.71260 * 0.10117 * 21 20 19 23 23 C 1.39299 * 118.33258 * 359.85413 * 22 21 20 24 24 O 1.34585 * 133.41905 * 180.08118 * 23 22 21 25 25 C 1.53585 * 109.57386 * 210.61005 * 12 11 10 26 26 C 1.54176 * 106.69898 * 112.45060 * 25 12 11 27 27 C 1.54760 * 104.36305 * 335.86699 * 26 25 12 28 28 C 1.46974 * 125.57907 * 190.95357 * 9 7 2 29 29 H 1.09006 * 111.81787 * 59.09541 * 28 9 7 30 30 H 0.97001 * 120.00124 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.36921 * 274.11221 * 10 9 7 32 32 H 1.08993 * 110.36952 * 36.33410 * 10 9 7 33 33 H 1.08998 * 112.19178 * 279.78991 * 11 10 9 34 34 H 1.09005 * 110.31789 * 155.62826 * 11 10 9 35 35 H 0.96998 * 119.99829 * 244.35699 * 13 12 11 36 36 H 1.08006 * 126.92529 * 0.23631 * 17 16 14 37 37 H 1.08006 * 119.40483 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.14297 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.83004 * 179.97438 * 22 21 20 40 40 H 1.08995 * 110.01846 * 232.59955 * 25 12 11 41 41 H 1.08995 * 110.01611 * 353.99018 * 25 12 11 42 42 H 1.09000 * 110.80107 * 216.92931 * 26 25 12 43 43 H 1.08994 * 110.09562 * 94.45676 * 26 25 12 44 44 H 1.08998 * 110.67409 * 278.89653 * 27 26 25 45 45 H 1.09003 * 110.81237 * 155.82999 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4071 2.0986 -1.3962 5 1 1.4958 2.6248 0.7886 6 1 3.5901 1.4157 0.6075 7 6 2.0102 -1.2022 -0.0005 8 1 3.0800 -1.2082 0.1469 9 7 1.3383 -2.3806 -0.1881 10 6 -0.0638 -2.5083 -0.6237 11 6 -0.1359 -3.9153 -1.2988 12 6 0.7891 -4.7410 -0.3703 13 7 0.0806 -5.2613 0.8018 14 6 -0.9146 -6.1566 0.6451 15 8 -1.2248 -6.5321 -0.4694 16 6 -1.6266 -6.6788 1.8223 17 6 -2.6448 -7.5760 1.7851 18 6 -3.0443 -7.7963 3.1764 19 7 -3.9678 -8.5528 3.7613 20 6 -4.1180 -8.5627 5.0670 21 6 -3.3158 -7.7823 5.8890 22 6 -2.3414 -6.9767 5.3305 23 6 -2.1955 -6.9794 3.9451 24 8 -1.3700 -6.3339 3.1007 25 6 1.4695 -5.8547 -1.1801 26 6 2.9710 -5.5089 -1.2343 27 6 3.0198 -3.9763 -1.0246 28 6 1.8977 -3.7250 0.0113 29 1 2.2486 -3.8704 1.0331 30 1 -0.4850 0.8400 0.0004 31 1 -0.7343 -2.4497 0.2337 32 1 -0.3079 -1.7322 -1.3490 33 1 0.2466 -3.9024 -2.3194 34 1 -1.1568 -4.2964 -1.2713 35 1 0.3279 -4.9616 1.6905 36 1 -3.0739 -8.0344 0.9063 37 1 -4.8789 -9.1892 5.5086 38 1 -3.4534 -7.8038 6.9599 39 1 -1.7077 -6.3622 5.9527 40 1 1.3131 -6.8179 -0.6945 41 1 1.0682 -5.8776 -2.1932 42 1 3.3948 -5.7752 -2.2026 43 1 3.5024 -6.0209 -0.4323 44 1 2.8068 -3.4534 -1.9570 45 1 3.9871 -3.6706 -0.6259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991884668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:42 Heat of formation + Delta-G solvation = 38.669127 kcal Electronic energy + Delta-G solvation = -29747.634723 eV Core-core repulsion = 25732.399198 eV Total energy + Delta-G solvation = -4015.235525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.91405 -40.29479 -39.16386 -38.12769 -34.32922 -33.66370 -33.44901 -31.77697 -31.53300 -30.47526 -29.57810 -26.80624 -26.42056 -24.81106 -23.89380 -23.65498 -22.24847 -21.23702 -20.20417 -20.04291 -18.94535 -18.31681 -17.91837 -17.04487 -16.76471 -16.71527 -15.96729 -15.64565 -15.02027 -14.70595 -14.66867 -14.12608 -14.06190 -13.61718 -13.54278 -13.41695 -13.34564 -13.16613 -12.92389 -12.84629 -12.24366 -11.93966 -11.80487 -11.26195 -11.10136 -10.86851 -10.81631 -10.77120 -10.59892 -10.37800 -10.22157 -9.97711 -9.93447 -9.80545 -9.75187 -9.65491 -9.31983 -8.99218 -8.72062 -8.59587 -6.86283 -5.78050 -3.12434 0.20091 0.80502 1.54350 2.13230 3.00323 3.10091 3.37111 3.42251 3.42769 3.44604 3.82000 4.11711 4.40845 4.45100 4.53499 4.65857 4.78701 4.91522 5.06894 5.07371 5.24224 5.30389 5.46509 5.47973 5.58617 5.60702 5.71434 5.78021 5.85556 5.89913 5.98922 6.01744 6.05984 6.13891 6.25963 6.33786 6.45393 6.49059 6.55228 6.67262 6.71084 6.86916 7.01415 7.47944 7.51632 7.55107 7.58718 7.76007 8.12507 8.21515 9.14855 9.76861 10.43560 11.34212 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.003046 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.703366 B = 9188.786696 C =10389.994909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.174 3.826 11 C -0.145 4.145 12 C 0.158 3.842 13 N -0.686 5.686 14 C 0.597 3.403 15 O -0.507 6.507 16 C 0.006 3.994 17 C -0.112 4.112 18 C 0.065 3.935 19 N -0.441 5.441 20 C 0.100 3.900 21 C -0.146 4.146 22 C -0.059 4.059 23 C 0.016 3.984 24 O -0.175 6.175 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.129 4.129 28 C 0.163 3.837 29 H 0.047 0.953 30 H 0.253 0.747 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.407 0.593 36 H 0.178 0.822 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 -16.612 8.760 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.184 4.184 12 C 0.072 3.928 13 N -0.334 5.334 14 C 0.380 3.620 15 O -0.384 6.384 16 C -0.047 4.047 17 C -0.134 4.134 18 C -0.065 4.065 19 N -0.150 5.150 20 C -0.066 4.066 21 C -0.166 4.166 22 C -0.085 4.085 23 C -0.034 4.034 24 O -0.075 6.075 25 C -0.151 4.151 26 C -0.162 4.162 27 C -0.169 4.169 28 C 0.054 3.946 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.243 0.757 36 H 0.196 0.804 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.812 -16.902 7.466 18.867 hybrid contribution 0.886 1.531 1.157 2.114 sum -2.927 -15.371 8.623 17.866 Atomic orbital electron populations 1.69957 1.04970 1.25222 1.56089 1.24837 0.95590 0.97830 1.01963 0.86136 0.78680 0.83591 0.77531 1.21604 1.21828 1.20604 1.18989 0.90996 0.82541 1.43160 0.90589 1.44478 1.09716 0.99232 1.78397 1.21699 0.85528 0.91238 0.96619 1.23586 0.98686 0.98182 0.97959 1.21788 0.92797 0.93071 0.85123 1.45870 1.34319 1.42113 1.11140 1.16595 0.79996 0.79934 0.85444 1.90883 1.65632 1.59543 1.22303 1.22386 0.99689 1.00011 0.82572 1.22475 0.96548 0.98962 0.95376 1.20656 0.95117 0.96829 0.93860 1.67037 1.17191 1.18380 1.12377 1.22848 0.98368 0.97453 0.87934 1.22065 0.95675 0.96879 1.01933 1.20544 0.99057 0.99658 0.89251 1.20590 0.93423 0.96422 0.92985 1.84053 1.51094 1.57530 1.14823 1.22262 0.95161 0.97299 1.00347 1.22339 0.95649 0.97259 1.00938 1.22906 0.99318 0.93884 1.00834 1.21775 0.90819 0.85759 0.96221 0.93529 0.93688 0.95448 0.91231 0.90818 0.91448 0.75738 0.80424 0.81616 0.83128 0.83406 0.92011 0.90941 0.92009 0.92318 0.90719 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 10.69 55.49 0.59 -25.74 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.61 29.56 -169.99 -5.03 16.59 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.06 9.99 -15.06 -0.15 -6.22 16 8 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 9 N -0.59 -14.26 3.07 -160.27 -0.49 -14.75 16 10 C 0.17 4.14 5.47 -1.83 -0.01 4.13 16 11 C -0.14 -2.83 5.85 -23.99 -0.14 -2.97 16 12 C 0.16 2.74 0.71 -129.37 -0.09 2.65 16 13 N -0.69 -10.99 5.23 -46.49 -0.24 -11.23 16 14 C 0.60 9.50 6.95 -12.64 -0.09 9.41 16 15 O -0.51 -9.01 14.70 5.25 0.08 -8.93 16 16 C 0.01 0.08 7.07 -36.85 -0.26 -0.18 16 17 C -0.11 -1.52 10.81 -37.18 -0.40 -1.92 16 18 C 0.06 0.86 7.52 -83.18 -0.63 0.24 16 19 N -0.44 -5.41 10.41 -9.87 -0.10 -5.51 16 20 C 0.10 0.85 11.17 -17.49 -0.20 0.65 16 21 C -0.15 -1.03 10.09 -39.36 -0.40 -1.42 16 22 C -0.06 -0.53 10.19 -39.20 -0.40 -0.93 16 23 C 0.02 0.21 7.42 -38.27 -0.28 -0.08 16 24 O -0.17 -2.40 10.28 3.36 0.03 -2.37 16 25 C -0.11 -1.72 5.24 -25.81 -0.14 -1.86 16 26 C -0.12 -1.75 6.83 -25.19 -0.17 -1.92 16 27 C -0.13 -2.22 6.26 -24.87 -0.16 -2.37 16 28 C 0.16 3.14 3.60 -65.61 -0.24 2.91 16 29 H 0.05 0.90 7.99 -51.93 -0.42 0.49 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.07 1.86 6.93 -51.93 -0.36 1.50 16 33 H 0.07 1.40 7.65 -51.93 -0.40 1.00 16 34 H 0.07 1.33 6.82 -51.93 -0.35 0.97 16 35 H 0.41 6.15 8.22 -40.82 -0.34 5.81 16 36 H 0.18 2.17 8.06 -52.48 -0.42 1.75 16 37 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.06 0.93 7.40 -51.93 -0.38 0.55 16 41 H 0.07 1.13 7.41 -51.93 -0.38 0.75 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -31.56 367.24 -9.44 -40.99 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.98 Total: 5.53 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.84 Total: -0.11 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.24 Total: -57.23 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.11 Total: -11.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.56 -9.44 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991884668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.664 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds