Wall clock time and date at job start Sat Apr 11 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48496 * 109.47527 * 270.00225 * 3 2 1 5 5 H 1.48506 * 109.47127 * 30.00387 * 3 2 1 6 6 H 1.48502 * 109.47180 * 149.99761 * 3 2 1 7 7 C 1.38815 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00405 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99592 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99702 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.45981 * 155.00112 * 10 9 7 12 12 C 1.53194 * 109.31401 * 181.38416 * 11 10 9 13 13 N 1.46922 * 108.77344 * 305.36529 * 12 11 10 14 14 C 1.34775 * 120.62856 * 233.58306 * 13 12 11 15 15 O 1.21555 * 120.00326 * 7.18384 * 14 13 12 16 16 C 1.47925 * 120.00005 * 187.17969 * 14 13 12 17 17 C 1.38262 * 119.24422 * 196.44893 * 16 14 13 18 18 C 1.40696 * 118.65138 * 180.02562 * 17 16 14 19 19 C 1.40241 * 122.04752 * 179.97438 * 18 17 16 20 20 C 1.36315 * 119.47497 * 180.02562 * 19 18 17 21 21 C 1.39249 * 120.94678 * 359.72431 * 20 19 18 22 22 C 1.36367 * 121.05698 * 0.56445 * 21 20 19 23 23 C 1.40042 * 119.58838 * 359.44670 * 22 21 20 24 24 C 1.41354 * 121.85654 * 180.25507 * 23 22 21 25 25 O 1.35496 * 119.95148 * 0.02562 * 24 23 22 26 26 N 1.31384 * 120.09511 * 180.02562 * 24 23 22 27 27 C 1.46931 * 118.74238 * 53.85849 * 13 12 11 28 28 C 1.53040 * 109.45663 * 275.06876 * 10 9 7 29 29 H 0.96998 * 119.99882 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99652 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.46030 * 35.02434 * 10 9 7 32 32 H 1.08995 * 109.49793 * 61.42904 * 11 10 9 33 33 H 1.09001 * 109.49680 * 301.33184 * 11 10 9 34 34 H 1.08996 * 109.58829 * 185.56997 * 12 11 10 35 35 H 1.09005 * 109.70498 * 65.21966 * 12 11 10 36 36 H 1.08005 * 120.67453 * 0.05082 * 17 16 14 37 37 H 1.07992 * 120.26288 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.52220 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.46904 * 180.28872 * 21 20 19 40 40 H 1.08002 * 120.20065 * 179.71860 * 22 21 20 41 41 H 0.96695 * 113.99842 * 90.00439 * 25 24 23 42 42 H 1.09003 * 109.58370 * 65.92626 * 27 13 12 43 43 H 1.08998 * 109.58327 * 186.35170 * 27 13 12 44 44 H 1.09002 * 109.49580 * 298.56187 * 28 10 9 45 45 H 1.08996 * 109.50469 * 58.66573 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0022 11 6 5.4994 -2.2581 -0.6124 12 6 6.2494 -3.5936 -0.6436 13 7 6.2669 -4.1579 0.7128 14 6 7.4293 -4.5199 1.2909 15 8 8.4851 -4.2620 0.7466 16 6 7.4202 -5.2310 2.5880 17 6 8.5840 -5.2941 3.3319 18 6 8.5615 -5.9740 4.5634 19 6 9.7002 -6.0820 5.3748 20 6 9.6193 -6.7535 6.5583 21 6 8.4214 -7.3282 6.9751 22 6 7.2973 -7.2465 6.2073 23 6 7.3428 -6.5644 4.9851 24 6 6.2054 -6.4458 4.1542 25 8 5.0291 -7.0006 4.5342 26 7 6.2873 -5.7983 3.0139 27 6 4.9926 -4.3259 1.4246 28 6 4.2572 -2.9771 1.4348 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0014 31 1 3.5646 -3.2058 -0.5924 32 1 6.0566 -1.5420 -0.0085 33 1 5.3955 -1.8755 -1.6277 34 1 7.2717 -3.4307 -0.9849 35 1 5.7441 -4.2832 -1.3198 36 1 9.4919 -4.8304 2.9750 37 1 10.6338 -5.6367 5.0644 38 1 10.4959 -6.8375 7.1835 39 1 8.3831 -7.8508 7.9194 40 1 6.3766 -7.7013 6.5420 41 1 4.4663 -6.4113 5.0546 42 1 4.3846 -5.0728 0.9141 43 1 5.1855 -4.6463 2.4484 44 1 4.8262 -2.2542 2.0194 45 1 3.2692 -3.1061 1.8766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996681225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:50 Heat of formation + Delta-G solvation = 15.821863 kcal Electronic energy + Delta-G solvation = -29195.774474 eV Core-core repulsion = 25179.548217 eV Total energy + Delta-G solvation = -4016.226257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57333 -39.93286 -38.32134 -37.57684 -36.84077 -34.62042 -32.75254 -32.19299 -31.64374 -30.71895 -29.98236 -29.54125 -25.73246 -24.59129 -24.19379 -22.88391 -22.55638 -22.26821 -20.77594 -19.73766 -18.71992 -18.32932 -18.04517 -17.43198 -16.66510 -16.34694 -15.82799 -15.67213 -15.19413 -14.91173 -14.65395 -14.44087 -14.12084 -13.91325 -13.90272 -13.63226 -13.44199 -13.12746 -12.94086 -12.62014 -12.42177 -12.22941 -12.20236 -12.00828 -11.68396 -11.63532 -11.01234 -10.97187 -10.84534 -10.58748 -10.54134 -10.31997 -10.24020 -9.85094 -9.62037 -9.58576 -9.23435 -8.83283 -8.57485 -8.34122 -7.25562 -5.77021 -3.12241 -0.21715 0.24568 1.36759 2.09464 2.90482 2.98349 3.20242 3.37763 3.41266 3.45438 3.59004 4.04413 4.13969 4.27752 4.36332 4.58501 4.59339 4.70655 4.74853 4.96335 5.13425 5.18000 5.24779 5.29500 5.38687 5.39494 5.47511 5.51229 5.60799 5.68429 5.78982 5.87289 5.91400 5.94935 5.96947 6.09463 6.23802 6.28487 6.32810 6.38741 6.46142 6.62636 6.87631 6.99859 7.07045 7.32745 7.51397 7.99543 8.12060 8.42314 9.20860 9.93760 10.14014 11.41343 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.002648 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.382607 B =10571.411252 C =11285.272177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.182 3.818 11 C -0.141 4.141 12 C 0.114 3.886 13 N -0.583 5.583 14 C 0.569 3.431 15 O -0.544 6.544 16 C 0.084 3.916 17 C -0.095 4.095 18 C -0.022 4.022 19 C -0.104 4.104 20 C -0.096 4.096 21 C -0.115 4.115 22 C -0.081 4.081 23 C -0.109 4.109 24 C 0.350 3.650 25 O -0.471 6.471 26 N -0.470 5.470 27 C 0.087 3.913 28 C -0.151 4.151 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.407 0.593 42 H 0.066 0.934 43 H 0.126 0.874 44 H 0.053 0.947 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.661 -16.219 14.668 29.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.072 3.928 11 C -0.180 4.180 12 C -0.008 4.008 13 N -0.313 5.313 14 C 0.356 3.644 15 O -0.422 6.422 16 C -0.041 4.041 17 C -0.116 4.116 18 C -0.026 4.026 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.101 4.101 23 C -0.112 4.112 24 C 0.156 3.844 25 O -0.279 6.279 26 N -0.192 5.192 27 C -0.035 4.035 28 C -0.192 4.192 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.173 0.827 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.266 0.734 42 H 0.085 0.915 43 H 0.143 0.857 44 H 0.072 0.928 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.437 -16.485 13.446 28.816 hybrid contribution 0.753 1.570 0.812 1.922 sum 20.191 -14.915 14.258 28.869 Atomic orbital electron populations 1.69702 1.05082 1.25780 1.57677 1.24671 0.95224 0.97179 1.02138 0.86556 0.79180 0.85035 0.77782 1.21099 1.21823 1.20398 1.19081 0.80573 0.94672 1.42786 0.89165 1.42815 1.04004 1.02017 1.90274 1.20182 0.90110 0.89273 0.93193 1.22231 0.97268 0.96358 1.02172 1.21682 1.02049 0.94879 0.82239 1.48023 1.06935 1.59861 1.16519 1.17801 0.83992 0.79032 0.83607 1.90769 1.30646 1.56702 1.64120 1.20609 0.88782 0.98662 0.96013 1.22165 0.99279 0.97350 0.92797 1.18058 0.93375 0.96696 0.94507 1.21050 0.97482 0.99334 0.94359 1.21063 0.98214 0.96184 0.96104 1.21035 0.92684 0.99460 1.00144 1.20987 0.99575 0.96998 0.92550 1.19069 0.94141 1.01399 0.96618 1.19361 0.86212 0.89970 0.88823 1.84728 1.28369 1.40587 1.74231 1.67223 1.27195 1.08841 1.15932 1.22874 0.82790 0.97671 1.00204 1.22743 1.00419 0.95312 1.00754 0.93099 0.80723 0.92508 0.91958 0.90429 0.89245 0.91073 0.82706 0.84462 0.85150 0.85193 0.84319 0.73359 0.91533 0.85725 0.92796 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.23 27.73 -169.99 -4.71 17.51 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 7 C -0.24 -6.73 10.41 -15.05 -0.16 -6.89 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.64 4.93 -53.38 -0.26 -17.90 16 10 C 0.18 3.47 2.73 -67.89 -0.19 3.28 16 11 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 12 C 0.11 1.66 6.44 -3.71 -0.02 1.64 16 13 N -0.58 -8.84 2.97 -173.58 -0.51 -9.35 16 14 C 0.57 8.80 7.61 -12.29 -0.09 8.71 16 15 O -0.54 -9.40 15.81 5.32 0.08 -9.31 16 16 C 0.08 1.12 6.45 -83.09 -0.54 0.59 16 17 C -0.09 -1.06 9.40 -38.65 -0.36 -1.42 16 18 C -0.02 -0.21 5.74 -106.84 -0.61 -0.82 16 19 C -0.10 -0.73 9.81 -39.52 -0.39 -1.12 16 20 C -0.10 -0.54 9.95 -39.90 -0.40 -0.94 16 21 C -0.12 -0.65 9.95 -39.88 -0.40 -1.04 16 22 C -0.08 -0.56 9.58 -39.58 -0.38 -0.94 16 23 C -0.11 -1.02 5.76 -106.66 -0.61 -1.64 16 24 C 0.35 3.69 7.80 -16.56 -0.13 3.56 16 25 O -0.47 -3.98 12.83 -18.18 -0.23 -4.22 16 26 N -0.47 -5.98 6.28 -9.60 -0.06 -6.04 16 27 C 0.09 1.29 5.84 -3.48 -0.02 1.27 16 28 C -0.15 -2.63 5.67 -26.38 -0.15 -2.78 16 29 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 30 H 0.36 8.45 5.66 -40.82 -0.23 8.21 16 31 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.16 1.57 7.69 -52.48 -0.40 1.16 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.14 0.71 7.65 -52.49 -0.40 0.31 16 41 H 0.41 1.56 9.06 45.56 0.41 1.97 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.13 1.76 4.22 -72.57 -0.31 1.45 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -35.34 368.19 -9.18 -44.52 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.11 Total: 8.69 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -4.69 Total: -0.96 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.06 Total: -61.78 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.15 Total: -13.53 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.34 -9.18 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996681225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.342 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds