Wall clock time and date at job start Sat Apr 11 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48496 * 109.47527 * 270.00225 * 3 2 1 5 5 H 1.48506 * 109.47127 * 30.00387 * 3 2 1 6 6 H 1.48502 * 109.47180 * 149.99761 * 3 2 1 7 7 C 1.38815 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00405 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99592 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99702 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.45981 * 155.00112 * 10 9 7 12 12 C 1.53194 * 109.31401 * 181.38416 * 11 10 9 13 13 N 1.46922 * 108.77344 * 305.36529 * 12 11 10 14 14 C 1.34775 * 120.62856 * 233.58306 * 13 12 11 15 15 O 1.21555 * 120.00326 * 7.18384 * 14 13 12 16 16 C 1.47925 * 120.00005 * 187.17969 * 14 13 12 17 17 C 1.38262 * 119.24422 * 196.44893 * 16 14 13 18 18 C 1.40696 * 118.65138 * 180.02562 * 17 16 14 19 19 C 1.40241 * 122.04752 * 179.97438 * 18 17 16 20 20 C 1.36315 * 119.47497 * 180.02562 * 19 18 17 21 21 C 1.39249 * 120.94678 * 359.72431 * 20 19 18 22 22 C 1.36367 * 121.05698 * 0.56445 * 21 20 19 23 23 C 1.40042 * 119.58838 * 359.44670 * 22 21 20 24 24 C 1.41354 * 121.85654 * 180.25507 * 23 22 21 25 25 O 1.35496 * 119.95148 * 0.02562 * 24 23 22 26 26 N 1.31384 * 120.09511 * 180.02562 * 24 23 22 27 27 C 1.46931 * 118.74238 * 53.85849 * 13 12 11 28 28 C 1.53040 * 109.45663 * 275.06876 * 10 9 7 29 29 H 0.96998 * 119.99882 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99652 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.46030 * 35.02434 * 10 9 7 32 32 H 1.08995 * 109.49793 * 61.42904 * 11 10 9 33 33 H 1.09001 * 109.49680 * 301.33184 * 11 10 9 34 34 H 1.08996 * 109.58829 * 185.56997 * 12 11 10 35 35 H 1.09005 * 109.70498 * 65.21966 * 12 11 10 36 36 H 1.08005 * 120.67453 * 0.05082 * 17 16 14 37 37 H 1.07992 * 120.26288 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.52220 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.46904 * 180.28872 * 21 20 19 40 40 H 1.08002 * 120.20065 * 179.71860 * 22 21 20 41 41 H 0.96695 * 113.99842 * 90.00439 * 25 24 23 42 42 H 1.09003 * 109.58370 * 65.92626 * 27 13 12 43 43 H 1.08998 * 109.58327 * 186.35170 * 27 13 12 44 44 H 1.09002 * 109.49580 * 298.56187 * 28 10 9 45 45 H 1.08996 * 109.50469 * 58.66573 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0022 11 6 5.4994 -2.2581 -0.6124 12 6 6.2494 -3.5936 -0.6436 13 7 6.2669 -4.1579 0.7128 14 6 7.4293 -4.5199 1.2909 15 8 8.4851 -4.2620 0.7466 16 6 7.4202 -5.2310 2.5880 17 6 8.5840 -5.2941 3.3319 18 6 8.5615 -5.9740 4.5634 19 6 9.7002 -6.0820 5.3748 20 6 9.6193 -6.7535 6.5583 21 6 8.4214 -7.3282 6.9751 22 6 7.2973 -7.2465 6.2073 23 6 7.3428 -6.5644 4.9851 24 6 6.2054 -6.4458 4.1542 25 8 5.0291 -7.0006 4.5342 26 7 6.2873 -5.7983 3.0139 27 6 4.9926 -4.3259 1.4246 28 6 4.2572 -2.9771 1.4348 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0014 31 1 3.5646 -3.2058 -0.5924 32 1 6.0566 -1.5420 -0.0085 33 1 5.3955 -1.8755 -1.6277 34 1 7.2717 -3.4307 -0.9849 35 1 5.7441 -4.2832 -1.3198 36 1 9.4919 -4.8304 2.9750 37 1 10.6338 -5.6367 5.0644 38 1 10.4959 -6.8375 7.1835 39 1 8.3831 -7.8508 7.9194 40 1 6.3766 -7.7013 6.5420 41 1 4.4663 -6.4113 5.0546 42 1 4.3846 -5.0728 0.9141 43 1 5.1855 -4.6463 2.4484 44 1 4.8262 -2.2542 2.0194 45 1 3.2692 -3.1061 1.8766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996681225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:50 Heat of formation + Delta-G solvation = -9.673921 kcal Electronic energy + Delta-G solvation = -29196.880054 eV Core-core repulsion = 25179.548217 eV Total energy + Delta-G solvation = -4017.331837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34760 -41.00973 -38.95158 -38.89808 -37.65945 -36.29370 -34.00647 -33.34218 -32.63717 -31.81226 -31.53343 -30.51346 -27.01700 -25.58517 -25.15492 -24.22727 -23.76329 -23.17202 -22.07369 -20.98740 -19.77095 -19.44181 -19.02733 -18.69828 -17.52269 -17.29728 -16.74629 -16.73049 -16.52854 -16.16307 -15.89428 -15.40253 -15.18551 -15.09486 -14.89576 -14.78478 -14.61594 -14.50881 -14.12502 -14.03731 -13.57742 -13.42968 -13.03048 -12.95600 -12.87360 -12.80174 -12.52268 -12.17918 -12.16832 -12.14175 -11.97718 -11.80309 -11.54454 -11.37071 -11.13991 -11.00426 -10.25859 -10.05788 -9.76493 -9.28079 -9.07753 -8.02012 -5.35135 -0.90628 -0.42397 0.76047 1.25332 1.37292 1.39649 1.46818 1.85175 2.15753 2.39416 2.47988 2.89273 3.17482 3.29392 3.50015 3.52279 3.60048 3.78079 3.84405 3.95855 4.09843 4.13223 4.24445 4.25622 4.35226 4.36688 4.38972 4.56410 4.61650 4.65699 4.74125 4.81743 4.86286 4.97778 4.99359 5.00702 5.16050 5.23590 5.36007 5.37770 5.43443 5.45334 5.62723 5.77885 5.83078 6.22058 6.26116 6.45741 6.64918 6.98350 7.07508 7.83685 8.03221 9.19473 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.002648 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.382607 B =10571.411252 C =11285.272177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.257 1.257 7 C -0.225 4.225 8 H 0.059 0.941 9 N -0.752 5.752 10 C 0.175 3.825 11 C -0.129 4.129 12 C 0.117 3.883 13 N -0.588 5.588 14 C 0.567 3.433 15 O -0.569 6.569 16 C 0.053 3.947 17 C -0.088 4.088 18 C -0.039 4.039 19 C -0.112 4.112 20 C -0.089 4.089 21 C -0.104 4.104 22 C -0.091 4.091 23 C -0.118 4.118 24 C 0.351 3.649 25 O -0.476 6.476 26 N -0.498 5.498 27 C 0.100 3.900 28 C -0.140 4.140 29 H 0.257 0.743 30 H 0.363 0.637 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.425 0.575 42 H 0.067 0.933 43 H 0.139 0.861 44 H 0.048 0.952 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.451 -17.156 17.013 32.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.181 1.181 7 C -0.356 4.356 8 H 0.077 0.923 9 N -0.395 5.395 10 C 0.067 3.933 11 C -0.168 4.168 12 C -0.005 4.005 13 N -0.318 5.318 14 C 0.356 3.644 15 O -0.450 6.450 16 C -0.071 4.071 17 C -0.109 4.109 18 C -0.044 4.044 19 C -0.130 4.130 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.110 4.110 23 C -0.121 4.121 24 C 0.157 3.843 25 O -0.287 6.287 26 N -0.220 5.220 27 C -0.023 4.023 28 C -0.180 4.180 29 H 0.066 0.934 30 H 0.196 0.804 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.181 0.819 39 H 0.180 0.820 40 H 0.173 0.827 41 H 0.288 0.712 42 H 0.085 0.915 43 H 0.155 0.845 44 H 0.067 0.933 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.268 -17.450 15.802 32.405 hybrid contribution -0.059 1.644 0.270 1.667 sum 22.209 -15.807 16.072 31.644 Atomic orbital electron populations 1.69877 1.07013 1.26551 1.59993 1.25458 0.96071 1.01053 1.02971 0.85433 0.78463 0.79957 0.78024 1.20489 1.22357 1.18146 1.19026 0.82451 0.93421 1.40678 0.92282 1.42833 1.02544 1.03799 1.90276 1.20406 0.91234 0.87277 0.94337 1.22094 0.95175 0.97345 1.02201 1.21673 1.02112 0.94230 0.82531 1.48072 1.06997 1.60056 1.16668 1.18163 0.83459 0.78578 0.84225 1.90733 1.31282 1.57888 1.65067 1.20305 0.90042 1.00784 0.95930 1.22271 0.98573 0.96861 0.93224 1.18266 0.94566 0.97142 0.94390 1.21336 0.97323 0.99698 0.94647 1.21512 0.99381 0.94337 0.95525 1.21497 0.91943 0.98016 1.00756 1.21249 1.01086 0.96925 0.91783 1.19247 0.93608 1.01810 0.97481 1.19515 0.87159 0.89311 0.88361 1.84687 1.28214 1.41165 1.74587 1.66948 1.27343 1.10459 1.17297 1.22782 0.82448 0.95772 1.01292 1.22544 0.99734 0.96703 0.99057 0.93411 0.80381 0.93423 0.92202 0.89629 0.88836 0.89824 0.82400 0.82713 0.81947 0.82049 0.82660 0.71196 0.91482 0.84475 0.93329 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.31 13.97 21.65 0.30 -63.01 16 2 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.95 46.18 27.73 68.60 1.90 48.08 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 6 H -0.26 -11.38 6.52 99.48 0.65 -10.74 16 7 C -0.22 -12.81 10.41 84.03 0.87 -11.94 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 9 N -0.75 -35.41 4.93 -322.80 -1.59 -37.00 16 10 C 0.18 6.72 2.73 45.02 0.12 6.84 16 11 C -0.13 -4.09 5.55 30.67 0.17 -3.92 16 12 C 0.12 3.34 6.44 86.36 0.56 3.90 16 13 N -0.59 -17.82 2.97 -821.35 -2.44 -20.25 16 14 C 0.57 17.71 7.61 86.81 0.66 18.37 16 15 O -0.57 -19.83 15.81 -3.89 -0.06 -19.89 16 16 C 0.05 1.42 6.45 41.44 0.27 1.69 16 17 C -0.09 -1.94 9.40 22.88 0.21 -1.73 16 18 C -0.04 -0.69 5.74 -21.30 -0.12 -0.82 16 19 C -0.11 -1.27 9.81 22.31 0.22 -1.05 16 20 C -0.09 -0.62 9.95 22.06 0.22 -0.40 16 21 C -0.10 -0.73 9.95 22.08 0.22 -0.51 16 22 C -0.09 -1.00 9.58 22.27 0.21 -0.78 16 23 C -0.12 -2.04 5.76 -21.19 -0.12 -2.16 16 24 C 0.35 7.16 7.80 85.53 0.67 7.83 16 25 O -0.48 -7.54 12.83 -87.97 -1.13 -8.67 16 26 N -0.50 -12.68 6.28 -297.68 -1.87 -14.55 16 27 C 0.10 2.98 5.84 86.51 0.51 3.48 16 28 C -0.14 -4.91 5.67 30.82 0.17 -4.74 16 29 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.36 16.62 5.66 -92.71 -0.52 16.10 16 31 H 0.05 1.92 8.08 -2.38 -0.02 1.90 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.09 2.65 7.00 -2.39 -0.02 2.63 16 35 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.16 3.19 7.69 -2.91 -0.02 3.17 16 37 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.16 0.13 8.06 -2.91 -0.02 0.11 16 39 H 0.16 0.15 8.06 -2.91 -0.02 0.12 16 40 H 0.16 1.11 7.65 -2.91 -0.02 1.09 16 41 H 0.43 2.77 9.06 -74.06 -0.67 2.10 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.14 3.91 4.22 -43.15 -0.18 3.72 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -78.36 368.19 0.05 -78.31 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.38 Total: 26.26 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 5.31 Total: 10.73 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -5.59 Total: -134.81 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -1.19 Total: -28.56 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Total: -78.36 0.05 -78.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996681225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.637 kcal (2) G-P(sol) polarization free energy of solvation -78.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds