Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46792 * 269.99958 * 3 2 1 5 5 H 1.48497 * 109.47128 * 29.99700 * 3 2 1 6 6 H 1.48498 * 109.46871 * 150.00165 * 3 2 1 7 7 C 1.38814 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99717 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99623 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.45987 * 154.99497 * 10 9 7 12 12 C 1.53192 * 109.31498 * 181.38528 * 11 10 9 13 13 N 1.46927 * 108.77573 * 305.36898 * 12 11 10 14 14 C 1.34776 * 120.63028 * 233.58187 * 13 12 11 15 15 O 1.21637 * 120.00047 * 355.85110 * 14 13 12 16 16 C 1.47139 * 119.99944 * 175.84819 * 14 13 12 17 17 C 1.37945 * 120.55163 * 54.36220 * 16 14 13 18 18 N 1.33952 * 122.19796 * 179.76983 * 17 16 14 19 19 H 0.97009 * 118.59650 * 180.26549 * 18 17 16 20 20 C 1.37796 * 122.80783 * 0.50561 * 18 17 16 21 21 C 1.39285 * 120.52314 * 179.75264 * 20 18 17 22 22 C 1.37737 * 119.96851 * 180.02562 * 21 20 18 23 23 C 1.38785 * 120.72748 * 359.97438 * 22 21 20 24 24 C 1.37712 * 120.29301 * 0.02562 * 23 22 21 25 25 C 1.39493 * 119.60811 * 359.95322 * 24 23 22 26 26 C 1.47145 * 120.54843 * 234.65042 * 16 14 13 27 27 O 1.21850 * 121.41711 * 359.94753 * 26 16 14 28 28 C 1.46926 * 118.73611 * 53.85872 * 13 12 11 29 29 C 1.53040 * 109.46349 * 275.06791 * 10 9 7 30 30 H 0.96999 * 120.00130 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00592 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.44619 * 35.03487 * 10 9 7 33 33 H 1.09003 * 109.49494 * 61.43524 * 11 10 9 34 34 H 1.08994 * 109.49928 * 301.34159 * 11 10 9 35 35 H 1.09000 * 109.58659 * 185.57982 * 12 11 10 36 36 H 1.08998 * 109.69860 * 65.22697 * 12 11 10 37 37 H 1.07996 * 118.89909 * 0.02984 * 17 16 14 38 38 H 1.07997 * 120.01488 * 0.02562 * 21 20 18 39 39 H 1.08001 * 119.63207 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.84985 * 179.97438 * 23 22 21 41 41 H 1.08005 * 120.19679 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.58711 * 65.92626 * 28 13 12 43 43 H 1.09005 * 109.58674 * 186.35247 * 28 13 12 44 44 H 1.09003 * 109.49215 * 298.56799 * 29 10 9 45 45 H 1.08997 * 109.49412 * 58.66136 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1805 -4.7522 0.6105 12 6 1.9620 -6.0694 0.6406 13 7 2.4415 -6.3659 -0.7162 14 6 2.1736 -7.5532 -1.2950 15 8 1.5949 -8.4193 -0.6668 16 6 2.5810 -7.8018 -2.6869 17 6 3.8928 -7.6258 -3.0756 18 7 4.3006 -7.8467 -4.3322 19 1 5.2367 -7.7102 -4.5474 20 6 3.4465 -8.2550 -5.3335 21 6 3.9211 -8.4660 -6.6259 22 6 3.0572 -8.8736 -7.6182 23 6 1.7117 -9.0789 -7.3467 24 6 1.2206 -8.8764 -6.0761 25 6 2.0841 -8.4640 -5.0611 26 6 1.5946 -8.2360 -3.6887 27 8 0.4233 -8.4016 -3.3966 28 6 3.2238 -5.3458 -1.4276 29 6 2.4234 -4.0346 -1.4368 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.9684 -3.5502 0.5906 33 1 0.2814 -4.8763 0.0068 34 1 0.9014 -4.4714 1.6260 35 1 1.3098 -6.8735 0.9816 36 1 2.8121 -5.9769 1.3165 37 1 4.6159 -7.3031 -2.3412 38 1 4.9661 -8.3101 -6.8498 39 1 3.4309 -9.0351 -8.6185 40 1 1.0468 -9.3981 -8.1356 41 1 0.1734 -9.0371 -5.8665 42 1 4.1748 -5.1931 -0.9174 43 1 3.4045 -5.6723 -2.4518 44 1 1.5127 -4.1655 -2.0212 45 1 3.0290 -3.2431 -1.8782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996756464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = -6.805242 kcal Electronic energy + Delta-G solvation = -29269.430962 eV Core-core repulsion = 25252.223520 eV Total energy + Delta-G solvation = -4017.207442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43951 -39.80004 -38.15399 -37.64212 -37.04724 -34.44729 -32.69452 -31.88764 -31.33505 -30.59481 -30.11392 -29.08419 -25.38075 -24.51518 -24.15996 -23.00252 -22.70235 -22.37919 -20.71679 -19.50038 -18.81274 -18.37729 -17.94281 -17.05902 -16.58192 -16.07969 -15.70695 -15.41044 -15.20157 -14.81116 -14.78196 -14.56152 -14.31359 -13.82781 -13.74241 -13.55200 -13.53752 -13.34094 -13.27190 -12.77367 -12.59101 -12.37406 -12.18941 -11.87890 -11.72828 -11.52474 -10.96351 -10.87692 -10.80661 -10.44740 -10.23752 -10.04523 -9.81556 -9.67008 -9.65503 -9.49308 -9.40449 -8.90542 -8.44076 -8.06896 -6.97255 -5.77212 -3.06534 0.38708 0.47666 1.32570 2.32711 2.55958 2.84663 3.25433 3.41332 3.46029 3.48593 3.65051 3.90040 4.13598 4.30203 4.37432 4.56884 4.61649 4.72108 4.85664 4.99396 5.08304 5.18920 5.35305 5.39075 5.40427 5.41935 5.51121 5.53816 5.55126 5.62847 5.76317 5.92893 5.97767 6.05171 6.09741 6.15924 6.25554 6.40222 6.44951 6.49104 6.54155 6.56056 6.69612 6.92254 7.06862 7.58237 7.67226 7.71511 8.37298 8.40898 9.51879 10.10373 10.45030 11.45351 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.002729 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.139257 B =10256.024241 C =11142.892273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.140 4.140 12 C 0.119 3.881 13 N -0.604 5.604 14 C 0.585 3.415 15 O -0.532 6.532 16 C -0.315 4.315 17 C 0.201 3.799 18 N -0.598 5.598 19 H 0.422 0.578 20 C 0.184 3.816 21 C -0.170 4.170 22 C -0.060 4.060 23 C -0.155 4.155 24 C -0.030 4.030 25 C -0.183 4.183 26 C 0.436 3.564 27 O -0.464 6.464 28 C 0.101 3.899 29 C -0.150 4.150 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.171 0.829 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.590 -19.567 -14.512 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.070 3.930 11 C -0.179 4.179 12 C -0.003 4.003 13 N -0.338 5.338 14 C 0.373 3.627 15 O -0.408 6.408 16 C -0.328 4.328 17 C 0.069 3.931 18 N -0.206 5.206 19 H 0.258 0.742 20 C 0.083 3.917 21 C -0.190 4.190 22 C -0.079 4.079 23 C -0.174 4.174 24 C -0.049 4.049 25 C -0.186 4.186 26 C 0.318 3.682 27 O -0.341 6.341 28 C -0.022 4.022 29 C -0.191 4.191 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.188 0.812 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.696 -19.963 -13.972 27.476 hybrid contribution 0.731 1.268 -0.278 1.490 sum 13.427 -18.695 -14.250 27.071 Atomic orbital electron populations 1.69666 1.05121 1.25667 1.57494 1.24759 0.95491 0.97692 1.03032 0.86212 0.78640 0.83998 0.77456 1.21788 1.21788 1.20786 1.19215 0.90906 0.84114 1.42837 0.91214 1.42449 1.05865 0.99699 1.88445 1.20155 0.94417 0.86110 0.92334 1.22215 0.99353 0.94084 1.02249 1.21606 0.98695 0.98129 0.81902 1.48090 1.54186 1.14499 1.16985 1.17382 0.78824 0.81844 0.84647 1.90774 1.41847 1.44287 1.63919 1.21818 0.94321 1.19652 0.96965 1.21916 0.96502 0.89225 0.85463 1.40784 1.12317 1.60735 1.06794 0.74155 1.17891 0.89519 0.95826 0.88513 1.20703 1.00812 1.06754 0.90754 1.21121 0.93177 0.94726 0.98853 1.21172 0.95823 1.03410 0.96948 1.21189 1.00044 0.92310 0.91308 1.20237 0.92313 1.09046 0.97050 1.19326 0.87853 0.75316 0.85711 1.90734 1.18307 1.43273 1.81835 1.22096 0.94505 0.89167 0.96425 1.22739 1.00075 0.94460 1.01867 0.93478 0.78218 0.93444 0.91731 0.90493 0.89301 0.91535 0.81193 0.84793 0.84938 0.84968 0.84100 0.91386 0.90776 0.92104 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.97 5.12 -53.38 -0.27 -18.25 16 10 C 0.18 3.47 2.73 -67.89 -0.19 3.28 16 11 C -0.14 -2.43 5.55 -26.61 -0.15 -2.57 16 12 C 0.12 1.80 6.42 -3.71 -0.02 1.77 16 13 N -0.60 -8.95 2.97 -173.88 -0.52 -9.46 16 14 C 0.59 9.68 6.96 -12.65 -0.09 9.59 16 15 O -0.53 -10.86 16.41 5.24 0.09 -10.77 16 16 C -0.32 -4.29 5.06 -102.78 -0.52 -4.81 16 17 C 0.20 1.61 8.51 -16.73 -0.14 1.46 16 18 N -0.60 -3.41 5.21 -10.42 -0.05 -3.46 16 19 H 0.42 0.62 8.73 -40.82 -0.36 0.27 16 20 C 0.18 1.48 6.66 -83.94 -0.56 0.93 16 21 C -0.17 -0.95 9.87 -39.38 -0.39 -1.34 16 22 C -0.06 -0.34 10.01 -39.56 -0.40 -0.73 16 23 C -0.15 -1.10 10.03 -39.57 -0.40 -1.50 16 24 C -0.03 -0.30 9.65 -39.31 -0.38 -0.68 16 25 C -0.18 -2.12 5.89 -104.81 -0.62 -2.74 16 26 C 0.44 6.77 7.14 -32.20 -0.23 6.54 16 27 O -0.46 -9.09 16.90 5.05 0.09 -9.00 16 28 C 0.10 1.28 5.54 -3.49 -0.02 1.26 16 29 C -0.15 -2.55 5.67 -26.39 -0.15 -2.70 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 32 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.09 1.42 7.03 -51.93 -0.36 1.06 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.17 0.80 7.30 -52.49 -0.38 0.42 16 38 H 0.13 0.33 8.06 -52.49 -0.42 -0.10 16 39 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.14 1.46 7.79 -52.48 -0.41 1.05 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.79 4.73 -51.93 -0.25 0.54 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -38.57 372.27 -9.70 -48.27 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.85 Total: 6.83 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -4.49 Total: 0.64 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.12 Total: -58.63 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.17 Total: -19.78 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.57 -9.70 -48.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996756464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.466 kcal (2) G-P(sol) polarization free energy of solvation -38.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds