Wall clock time and date at job start Sat Apr 11 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99895 * 2 1 4 4 H 1.48493 * 109.47306 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47284 * 300.00499 * 3 2 1 6 6 H 1.48505 * 109.46829 * 60.00024 * 3 2 1 7 7 C 1.38810 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99659 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99979 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.46301 * 155.00515 * 10 9 7 12 12 C 1.53188 * 109.31406 * 181.38904 * 11 10 9 13 13 N 1.46925 * 108.77307 * 305.36042 * 12 11 10 14 14 C 1.34786 * 120.63016 * 233.58936 * 13 12 11 15 15 O 1.21494 * 119.99733 * 6.82628 * 14 13 12 16 16 C 1.48346 * 120.00053 * 186.82941 * 14 13 12 17 17 C 1.41914 * 126.84727 * 186.92943 * 16 14 13 18 18 C 1.36711 * 103.81651 * 180.13693 * 17 16 14 19 19 C 1.47855 * 126.81504 * 179.88018 * 18 17 16 20 20 C 1.39563 * 120.14288 * 179.71522 * 19 18 17 21 21 C 1.37955 * 119.85713 * 179.97438 * 20 19 18 22 22 C 1.38358 * 120.14290 * 359.97438 * 21 20 19 23 23 C 1.38354 * 120.28819 * 0.27454 * 22 21 20 24 24 C 1.37965 * 120.14287 * 359.45041 * 23 22 21 25 25 O 1.34455 * 106.36519 * 359.61602 * 18 17 16 26 26 N 1.20878 * 111.74023 * 0.26186 * 25 18 17 27 27 C 1.46918 * 118.73900 * 53.86341 * 13 12 11 28 28 C 1.53044 * 109.46019 * 275.07106 * 10 9 7 29 29 H 0.97005 * 120.00097 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99867 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46125 * 35.02777 * 10 9 7 32 32 H 1.08998 * 109.49858 * 61.43039 * 11 10 9 33 33 H 1.09007 * 109.52290 * 301.35642 * 11 10 9 34 34 H 1.09009 * 109.58552 * 185.57903 * 12 11 10 35 35 H 1.08993 * 109.70789 * 65.21858 * 12 11 10 36 36 H 1.08007 * 128.09063 * 0.02562 * 17 16 14 37 37 H 1.08002 * 120.07241 * 359.95300 * 20 19 18 38 38 H 1.08002 * 119.93309 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.85356 * 180.02562 * 22 21 20 40 40 H 1.08003 * 119.92668 * 179.72221 * 23 22 21 41 41 H 1.08003 * 120.06835 * 180.27547 * 24 23 22 42 42 H 1.08998 * 109.58669 * 65.92960 * 27 13 12 43 43 H 1.09009 * 109.58995 * 186.35287 * 27 13 12 44 44 H 1.08996 * 109.49706 * 298.56553 * 28 10 9 45 45 H 1.08997 * 109.49514 * 58.65897 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.1805 -4.7522 0.6091 12 6 1.9621 -6.0694 0.6393 13 7 2.4416 -6.3658 -0.7175 14 6 2.1737 -7.5531 -1.2965 15 8 1.4281 -8.3411 -0.7495 16 6 2.7893 -7.8977 -2.6014 17 6 2.5067 -9.0351 -3.4018 18 6 3.3305 -8.8864 -4.4827 19 6 3.4480 -9.7999 -5.6393 20 6 4.3360 -9.5078 -6.6757 21 6 4.4413 -10.3646 -7.7518 22 6 3.6694 -11.5116 -7.8049 23 6 2.7835 -11.8043 -6.7833 24 6 2.6727 -10.9588 -5.6987 25 8 4.0082 -7.7416 -4.2879 26 7 3.6987 -7.2095 -3.2477 27 6 3.2240 -5.3457 -1.4288 28 6 2.4235 -4.0345 -1.4379 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.9686 -3.5504 0.5894 32 1 0.2815 -4.8763 0.0054 33 1 0.9008 -4.4718 1.6247 34 1 1.3099 -6.8736 0.9801 35 1 2.8121 -5.9770 1.3152 36 1 1.8062 -9.8326 -3.2026 37 1 4.9391 -8.6128 -6.6354 38 1 5.1283 -10.1399 -8.5543 39 1 3.7559 -12.1793 -8.6494 40 1 2.1805 -12.6990 -6.8328 41 1 1.9840 -11.1908 -4.8998 42 1 4.1750 -5.1930 -0.9186 43 1 3.4047 -5.6722 -2.4530 44 1 1.5129 -4.1653 -2.0224 45 1 3.0291 -3.2430 -1.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996783111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:07 Heat of formation + Delta-G solvation = 78.682923 kcal Electronic energy + Delta-G solvation = -28405.336727 eV Core-core repulsion = 24391.836330 eV Total energy + Delta-G solvation = -4013.500397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.29014 -40.03700 -39.54575 -37.43631 -34.67559 -34.35844 -33.59694 -32.00211 -31.46539 -30.80519 -29.90035 -29.27449 -25.86442 -24.35861 -24.19966 -23.11871 -22.99193 -22.30025 -21.90827 -20.29183 -19.26878 -18.11390 -18.06127 -17.30381 -17.06406 -16.69462 -15.92386 -15.62540 -15.29948 -15.11007 -14.84183 -14.31888 -14.01277 -13.84082 -13.77663 -13.62788 -13.50980 -13.45717 -13.37801 -13.14351 -12.46923 -12.19214 -11.96308 -11.79013 -11.56069 -11.26160 -10.95187 -10.90127 -10.81518 -10.73820 -10.64089 -10.45308 -10.21008 -10.13545 -9.82689 -9.67471 -9.47836 -8.92106 -8.79772 -8.59635 -6.98451 -5.78456 -3.07706 0.16185 0.88793 1.05717 1.74316 2.46688 2.80533 3.04859 3.33715 3.41834 3.47489 3.49763 3.70695 4.01098 4.38994 4.45997 4.56039 4.57004 4.68017 4.71123 4.82186 4.92657 5.11623 5.21770 5.29485 5.33499 5.34658 5.43706 5.50234 5.53857 5.55135 5.68544 5.78078 5.91829 5.92124 5.92959 5.98991 6.06389 6.23096 6.34152 6.38861 6.39246 6.49146 6.59482 6.87843 7.03067 7.31955 7.68362 7.71752 8.01693 8.39682 9.51013 10.08269 10.43176 11.44137 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.002131 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.334629 B =13135.624714 C =14166.399999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.588 5.588 14 C 0.594 3.406 15 O -0.532 6.532 16 C -0.013 4.013 17 C -0.166 4.166 18 C 0.010 3.990 19 C -0.023 4.023 20 C -0.093 4.093 21 C -0.118 4.118 22 C -0.106 4.106 23 C -0.118 4.118 24 C -0.089 4.089 25 O 0.122 5.878 26 N -0.319 5.319 27 C 0.087 3.913 28 C -0.148 4.148 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.183 0.817 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.548 -25.701 -13.847 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.067 3.933 11 C -0.178 4.178 12 C -0.006 4.006 13 N -0.320 5.320 14 C 0.380 3.620 15 O -0.408 6.408 16 C -0.170 4.170 17 C -0.188 4.188 18 C -0.053 4.053 19 C -0.024 4.024 20 C -0.111 4.111 21 C -0.136 4.136 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.108 4.108 25 O 0.048 5.952 26 N -0.022 5.022 27 C -0.036 4.036 28 C -0.189 4.189 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.200 0.800 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.076 0.924 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.876 -24.770 -13.180 29.429 hybrid contribution -0.325 0.514 -0.066 0.612 sum 8.550 -24.256 -13.246 28.930 Atomic orbital electron populations 1.69678 1.05119 1.25556 1.57689 1.24761 0.95522 0.97735 1.03008 0.86127 0.78785 0.84154 0.77182 1.20537 1.21890 1.21873 1.19283 0.91019 0.84066 1.42630 0.91086 1.42436 1.05807 0.99687 1.88483 1.20192 0.94453 0.86103 0.92511 1.22207 0.99220 0.93890 1.02438 1.21739 0.99010 0.98502 0.81344 1.48058 1.52824 1.14087 1.17016 1.16943 0.80764 0.82158 0.82159 1.90769 1.36361 1.50063 1.63583 1.23408 0.99125 0.95341 0.99154 1.22566 1.02915 1.00481 0.92863 1.22438 0.96032 0.89499 0.97338 1.17600 0.99736 0.93518 0.91526 1.21342 0.97083 0.99824 0.92849 1.21142 0.99748 0.94535 0.98190 1.21374 0.95487 0.96992 0.98614 1.21101 0.98998 0.99733 0.93735 1.21161 0.98123 0.92722 0.98755 1.84894 1.50542 1.28836 1.30929 1.74141 1.14775 1.18059 0.95179 1.22605 0.94059 0.88448 0.98513 1.22739 0.99908 0.94664 1.01601 0.93551 0.78256 0.93320 0.91702 0.90248 0.89079 0.91032 0.79982 0.84821 0.85219 0.85527 0.85136 0.85066 0.91285 0.87464 0.92351 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -18.07 5.12 -53.39 -0.27 -18.34 16 10 C 0.18 3.50 2.73 -67.89 -0.19 3.31 16 11 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 12 C 0.12 1.72 6.44 -3.71 -0.02 1.69 16 13 N -0.59 -9.08 2.97 -173.43 -0.51 -9.59 16 14 C 0.59 9.42 7.71 -12.10 -0.09 9.33 16 15 O -0.53 -9.40 16.38 5.37 0.09 -9.31 16 16 C -0.01 -0.17 6.87 -82.62 -0.57 -0.74 16 17 C -0.17 -1.84 10.35 -38.73 -0.40 -2.24 16 18 C 0.01 0.10 7.15 -36.20 -0.26 -0.16 16 19 C -0.02 -0.18 5.87 -104.98 -0.62 -0.80 16 20 C -0.09 -0.64 9.73 -39.19 -0.38 -1.03 16 21 C -0.12 -0.65 10.03 -39.64 -0.40 -1.05 16 22 C -0.11 -0.53 10.04 -39.49 -0.40 -0.93 16 23 C -0.12 -0.63 10.03 -39.64 -0.40 -1.03 16 24 C -0.09 -0.59 9.58 -39.19 -0.38 -0.97 16 25 O 0.12 1.39 11.01 16.07 0.18 1.57 16 26 N -0.32 -4.25 8.62 33.35 0.29 -3.96 16 27 C 0.09 1.32 6.16 -3.49 -0.02 1.29 16 28 C -0.15 -2.67 5.67 -26.38 -0.15 -2.82 16 29 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 31 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.34 7.00 -51.92 -0.36 0.97 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.18 1.63 7.46 -52.48 -0.39 1.24 16 37 H 0.13 0.80 7.96 -52.49 -0.42 0.39 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 40 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 41 H 0.13 0.69 7.15 -52.48 -0.38 0.32 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.11 1.60 4.18 -57.68 -0.24 1.36 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -32.74 376.16 -9.40 -42.14 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.88 Total: 7.84 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -4.66 Total: -5.86 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.22 Total: -59.40 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.26 Total: -7.74 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.74 -9.40 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996783111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.823 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds