Wall clock time and date at job start Sat Apr 11 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00182 * 2 1 4 4 H 1.48503 * 109.47161 * 240.00028 * 3 2 1 5 5 H 1.48503 * 109.46983 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47491 * 119.99952 * 3 2 1 7 7 C 1.38816 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99653 * 359.97438 * 7 2 1 10 10 C 1.46491 * 119.99885 * 180.02562 * 9 7 2 11 11 C 1.53043 * 109.45976 * 154.99867 * 10 9 7 12 12 C 1.53193 * 109.31238 * 181.38797 * 11 10 9 13 13 N 1.46938 * 108.77343 * 305.36452 * 12 11 10 14 14 C 1.34778 * 120.62661 * 233.33748 * 13 12 11 15 15 O 1.21584 * 119.99556 * 176.06985 * 14 13 12 16 16 C 1.47552 * 119.99991 * 356.06566 * 14 13 12 17 17 C 1.38905 * 120.30066 * 320.67793 * 16 14 13 18 18 C 1.40562 * 118.06646 * 179.97438 * 17 16 14 19 19 C 1.40543 * 121.12682 * 180.02562 * 18 17 16 20 20 C 1.36144 * 119.63657 * 180.02562 * 19 18 17 21 21 C 1.39330 * 120.83518 * 359.95923 * 20 19 18 22 22 C 1.36145 * 121.07418 * 0.02562 * 21 20 19 23 23 C 1.40530 * 119.82746 * 359.97438 * 22 21 20 24 24 N 1.33811 * 120.74286 * 180.02562 * 23 22 21 25 25 C 1.31379 * 121.66097 * 179.71693 * 24 23 22 26 26 O 1.35411 * 119.32140 * 180.28967 * 25 24 23 27 27 C 1.46920 * 118.73813 * 53.61120 * 13 12 11 28 28 C 1.53035 * 109.46069 * 275.06596 * 10 9 7 29 29 H 0.96998 * 119.99867 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99804 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.45318 * 35.03378 * 10 9 7 32 32 H 1.08996 * 109.49796 * 61.43323 * 11 10 9 33 33 H 1.09000 * 109.49560 * 301.32920 * 11 10 9 34 34 H 1.09000 * 109.58947 * 185.58315 * 12 11 10 35 35 H 1.08998 * 109.71071 * 65.21576 * 12 11 10 36 36 H 1.08001 * 120.96654 * 0.02975 * 17 16 14 37 37 H 1.08000 * 120.18333 * 359.96544 * 19 18 17 38 38 H 1.08009 * 119.58463 * 180.02562 * 20 19 18 39 39 H 1.07993 * 119.46484 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.08345 * 180.02562 * 22 21 20 41 41 H 0.96705 * 113.99584 * 270.25772 * 26 25 24 42 42 H 1.08993 * 109.58964 * 66.18108 * 27 13 12 43 43 H 1.09004 * 109.58880 * 186.60889 * 27 13 12 44 44 H 1.09001 * 109.49816 * 298.56773 * 28 10 9 45 45 H 1.09010 * 109.49804 * 58.66283 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.1803 -4.7522 0.6093 12 6 1.9619 -6.0694 0.6395 13 7 2.4414 -6.3659 -0.7175 14 6 2.1777 -7.5551 -1.2943 15 8 2.5177 -7.7622 -2.4431 16 6 1.4764 -8.6057 -0.5317 17 6 1.7660 -8.8081 0.8117 18 6 1.0696 -9.8213 1.4930 19 6 1.3113 -10.0810 2.8529 20 6 0.6197 -11.0701 3.4828 21 6 -0.3262 -11.8287 2.7964 22 6 -0.5856 -11.6040 1.4789 23 6 0.1072 -10.5919 0.7929 24 7 -0.1336 -10.3550 -0.5019 25 6 0.4995 -9.4100 -1.1594 26 8 0.2144 -9.2072 -2.4675 27 6 3.2190 -5.3438 -1.4310 28 6 2.4233 -4.0346 -1.4378 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.9684 -3.5504 0.5895 32 1 0.2813 -4.8763 0.0057 33 1 0.9014 -4.4715 1.6250 34 1 1.3098 -6.8736 0.9803 35 1 2.8121 -5.9771 1.3153 36 1 2.5041 -8.2039 1.3182 37 1 2.0424 -9.4996 3.3951 38 1 0.8058 -11.2687 4.5280 39 1 -0.8624 -12.6077 3.3179 40 1 -1.3225 -12.2013 0.9627 41 1 0.7570 -9.7297 -3.0739 42 1 4.1717 -5.1897 -0.9245 43 1 3.3962 -5.6689 -2.4562 44 1 1.5125 -4.1654 -2.0223 45 1 3.0289 -3.2431 -1.8794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996863678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:10 Heat of formation + Delta-G solvation = 5.106638 kcal Electronic energy + Delta-G solvation = -29259.165523 eV Core-core repulsion = 25242.474619 eV Total energy + Delta-G solvation = -4016.690904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53113 -39.93654 -38.52753 -37.26488 -36.14820 -34.70177 -33.93392 -32.07994 -31.26276 -30.33091 -30.09221 -29.17208 -25.68481 -24.48747 -24.16350 -23.10087 -22.68061 -22.35420 -20.73290 -19.56877 -19.25786 -18.38969 -17.55134 -16.99659 -16.87583 -16.18606 -15.87305 -15.56752 -14.93864 -14.83402 -14.79166 -14.43739 -14.13892 -13.92823 -13.88289 -13.60393 -13.58674 -13.26289 -13.02051 -12.46940 -12.36143 -12.08658 -12.02041 -11.75571 -11.71151 -11.55838 -11.05254 -10.91926 -10.87684 -10.75896 -10.45499 -10.33859 -10.25315 -9.91529 -9.72332 -9.58667 -9.06433 -8.92613 -8.64415 -8.57664 -7.00688 -5.79738 -3.09315 -0.15370 0.23652 1.47878 2.19740 2.72265 3.01446 3.27802 3.41511 3.46152 3.47236 3.66416 4.01695 4.14164 4.24837 4.40647 4.55012 4.57504 4.70547 4.83179 4.88619 4.96720 5.15122 5.25630 5.29145 5.31516 5.36583 5.43088 5.53646 5.57240 5.59194 5.73328 5.83302 5.88831 5.91186 5.96000 6.01669 6.15426 6.22896 6.35871 6.40282 6.50841 6.53650 6.86561 7.01722 7.24377 7.34608 7.54173 7.65570 8.06195 8.38353 9.49500 10.06466 10.41005 11.42709 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.002574 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.759373 B =10875.287315 C =11706.887360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.140 4.140 12 C 0.098 3.902 13 N -0.597 5.597 14 C 0.569 3.431 15 O -0.533 6.533 16 C -0.193 4.193 17 C -0.007 4.007 18 C -0.122 4.122 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.087 4.087 22 C -0.102 4.102 23 C 0.166 3.834 24 N -0.499 5.499 25 C 0.392 3.608 26 O -0.469 6.469 27 C 0.114 3.886 28 C -0.151 4.151 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.411 0.589 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 -25.766 6.668 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.179 4.179 12 C -0.025 4.025 13 N -0.329 5.329 14 C 0.356 3.644 15 O -0.411 6.411 16 C -0.200 4.200 17 C -0.033 4.033 18 C -0.124 4.124 19 C -0.100 4.100 20 C -0.141 4.141 21 C -0.107 4.107 22 C -0.121 4.121 23 C 0.044 3.956 24 N -0.219 5.219 25 C 0.198 3.802 26 O -0.277 6.277 27 C -0.008 4.008 28 C -0.192 4.192 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.271 0.729 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.782 -25.823 5.846 26.622 hybrid contribution 0.911 1.279 0.146 1.577 sum 3.693 -24.544 5.992 25.533 Atomic orbital electron populations 1.69652 1.05137 1.25844 1.57391 1.24755 0.95503 0.97728 1.02877 0.86276 0.78532 0.83572 0.77839 1.21239 1.21701 1.21270 1.19180 0.90930 0.84069 1.43073 0.91202 1.42419 1.05801 0.99667 1.88536 1.20158 0.94294 0.86011 0.92589 1.22219 0.99336 0.93934 1.02443 1.22194 0.98734 0.98734 0.82817 1.48056 1.53536 1.14279 1.17039 1.17772 0.78882 0.81768 0.85970 1.90753 1.53297 1.80342 1.16732 1.21087 1.01277 1.01945 0.95694 1.22131 0.95861 0.93410 0.91856 1.18781 0.99658 0.98198 0.95780 1.21056 0.99129 0.97481 0.92373 1.20956 0.96594 0.96009 1.00585 1.21001 0.96857 0.98854 0.94015 1.20836 0.99870 0.97045 0.94307 1.18666 0.93685 0.94858 0.88343 1.67538 1.26725 1.18644 1.08949 1.19093 0.87081 0.87680 0.86368 1.84667 1.63890 1.67434 1.11698 1.21770 0.93615 0.87652 0.97781 1.22684 1.00285 0.94746 1.01476 0.93410 0.78250 0.93370 0.91631 0.90321 0.89854 0.90794 0.82703 0.84694 0.85136 0.84982 0.84405 0.72882 0.91486 0.89397 0.92117 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.53 9.93 -15.05 -0.15 -6.68 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.63 5.12 -53.39 -0.27 -17.91 16 10 C 0.18 3.36 2.73 -67.89 -0.19 3.18 16 11 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 12 C 0.10 1.17 4.89 -3.70 -0.02 1.15 16 13 N -0.60 -8.23 2.97 -173.98 -0.52 -8.74 16 14 C 0.57 8.33 7.16 -12.46 -0.09 8.24 16 15 O -0.53 -9.10 15.53 -10.95 -0.17 -9.27 16 16 C -0.19 -2.44 5.22 -104.71 -0.55 -2.99 16 17 C -0.01 -0.07 7.20 -38.46 -0.28 -0.34 16 18 C -0.12 -1.18 5.74 -106.80 -0.61 -1.79 16 19 C -0.08 -0.57 9.77 -39.47 -0.39 -0.95 16 20 C -0.12 -0.74 9.96 -39.93 -0.40 -1.13 16 21 C -0.09 -0.55 9.94 -39.93 -0.40 -0.95 16 22 C -0.10 -0.88 9.97 -39.47 -0.39 -1.27 16 23 C 0.17 1.85 6.61 -84.79 -0.56 1.29 16 24 N -0.50 -6.54 10.33 -10.76 -0.11 -6.66 16 25 C 0.39 5.27 7.71 -16.60 -0.13 5.15 16 26 O -0.47 -6.26 12.28 -34.17 -0.42 -6.68 16 27 C 0.11 1.66 6.44 -3.71 -0.02 1.63 16 28 C -0.15 -2.65 5.66 -26.61 -0.15 -2.80 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 31 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 0.88 4.54 -51.93 -0.24 0.65 16 35 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 36 H 0.16 1.14 6.43 -52.49 -0.34 0.80 16 37 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 39 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.41 3.81 9.06 45.56 0.41 4.22 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -34.47 370.23 -9.80 -44.28 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.03 Total: 10.57 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -4.56 Total: -1.02 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.18 Total: -60.53 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.59 Total: -15.96 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.47 -9.80 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996863678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.384 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds