Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48501 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47206 * 299.99465 * 3 2 1 6 6 H 1.48499 * 109.47396 * 59.99600 * 3 2 1 7 7 C 1.38809 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00283 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.49959 * 325.06428 * 10 9 7 12 12 C 1.53045 * 109.49871 * 204.99671 * 10 9 7 13 13 C 1.53043 * 109.53769 * 178.64826 * 12 10 9 14 14 C 1.53193 * 109.33820 * 61.35108 * 13 12 10 15 15 N 1.46938 * 108.77131 * 305.41556 * 14 13 12 16 16 C 1.34773 * 120.60190 * 233.53189 * 15 14 13 17 17 O 1.21646 * 120.00202 * 174.20726 * 16 15 14 18 18 C 1.47142 * 120.00505 * 354.21458 * 16 15 14 19 19 C 1.37940 * 120.54350 * 306.17231 * 18 16 15 20 20 N 1.33958 * 122.19876 * 179.97438 * 19 18 16 21 21 H 0.96995 * 118.60479 * 179.97438 * 20 19 18 22 22 C 1.37799 * 122.80277 * 0.02562 * 20 19 18 23 23 C 1.39280 * 120.51686 * 179.97438 * 22 20 19 24 24 C 1.37735 * 119.97600 * 180.02562 * 23 22 20 25 25 C 1.38783 * 120.72079 * 359.96090 * 24 23 22 26 26 C 1.37720 * 120.29448 * 0.02562 * 25 24 23 27 27 C 1.39489 * 119.60859 * 359.97438 * 26 25 24 28 28 C 1.47144 * 120.55550 * 125.88768 * 18 16 15 29 29 O 1.21861 * 121.40801 * 0.02693 * 28 18 16 30 30 C 1.46918 * 118.76797 * 53.55340 * 15 14 13 31 31 H 0.97000 * 119.99461 * 0.02562 * 1 2 3 32 32 H 0.97004 * 120.00011 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.45836 * 58.63445 * 12 10 9 34 34 H 1.08999 * 109.45974 * 298.66836 * 12 10 9 35 35 H 1.08993 * 109.49984 * 181.31613 * 13 12 10 36 36 H 1.09000 * 109.50034 * 301.38720 * 13 12 10 37 37 H 1.09003 * 109.58659 * 65.16290 * 14 13 12 38 38 H 1.08997 * 109.59035 * 185.59223 * 14 13 12 39 39 H 1.08000 * 118.90547 * 359.96987 * 19 18 16 40 40 H 1.08005 * 120.01155 * 0.04509 * 23 22 20 41 41 H 1.07998 * 119.63601 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.85660 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.19647 * 180.02562 * 26 25 24 44 44 H 1.08996 * 109.59324 * 186.62605 * 30 15 14 45 45 H 1.09005 * 109.58793 * 66.20102 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9694 -3.5507 -0.5878 12 6 1.1810 -4.7529 -0.6091 13 6 1.9575 -6.0713 -0.6404 14 6 2.3189 -6.4814 0.7907 15 7 3.0373 -5.3722 1.4332 16 6 4.2401 -5.5745 2.0066 17 8 4.8728 -4.6311 2.4419 18 6 4.7880 -6.9365 2.1062 19 6 4.0524 -7.9472 2.6894 20 7 4.5184 -9.1985 2.7970 21 1 3.9569 -9.8686 3.2170 22 6 5.7620 -9.5741 2.3373 23 6 6.1991 -10.8894 2.4745 24 6 7.4445 -11.2525 2.0115 25 6 8.2751 -10.3203 1.4055 26 6 7.8633 -9.0143 1.2590 27 6 6.6046 -8.6324 1.7232 28 6 6.1272 -7.2443 1.5798 29 8 6.8143 -6.3877 1.0517 30 6 2.4199 -4.0391 1.4392 31 1 -0.4849 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 0.9018 -4.4718 -1.6245 34 1 0.2814 -4.8755 -0.0060 35 1 1.3409 -6.8460 -1.0960 36 1 2.8696 -5.9427 -1.2232 37 1 1.4086 -6.6988 1.3494 38 1 2.9560 -7.3655 0.7677 39 1 3.0679 -7.7222 3.0721 40 1 5.5617 -11.6243 2.9435 41 1 7.7781 -12.2738 2.1211 42 1 9.2490 -10.6202 1.0479 43 1 8.5109 -8.2903 0.7868 44 1 3.1238 -3.3122 1.8444 45 1 1.5176 -4.0570 2.0505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999592707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = -7.737106 kcal Electronic energy + Delta-G solvation = -29300.284105 eV Core-core repulsion = 25283.036255 eV Total energy + Delta-G solvation = -4017.247851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42588 -39.70129 -38.14600 -37.65645 -36.93852 -34.42928 -32.61974 -32.00540 -31.27798 -30.98851 -30.27141 -28.14290 -25.60118 -24.47801 -24.05605 -23.73155 -22.64257 -21.82604 -20.77475 -19.46121 -18.82092 -18.28051 -17.91123 -17.02420 -16.51913 -16.08997 -15.65362 -15.32938 -15.20216 -14.86549 -14.76930 -14.39294 -14.27961 -14.11199 -13.70150 -13.57184 -13.53043 -13.26450 -13.19015 -12.61410 -12.54006 -12.40178 -12.30690 -12.16965 -11.75108 -11.30672 -11.01032 -10.80131 -10.61490 -10.52263 -10.10815 -9.97558 -9.76904 -9.65946 -9.64856 -9.48860 -9.35606 -9.01252 -8.27418 -8.06417 -6.93527 -5.73176 -3.02385 0.37222 0.46027 1.31514 2.32147 2.57518 2.96556 3.33702 3.49784 3.56113 3.60136 3.65856 3.90628 4.12280 4.32277 4.36840 4.61683 4.64584 4.69324 4.82578 4.93419 5.04459 5.12146 5.18829 5.32090 5.37471 5.49052 5.51205 5.52393 5.56600 5.68479 5.83990 5.90468 5.98927 6.08449 6.09026 6.14921 6.22527 6.27266 6.40433 6.47460 6.54800 6.56587 6.83738 6.91241 7.09777 7.71243 7.76027 7.80468 8.45112 8.54912 9.57425 10.11201 10.46764 11.49254 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.002556 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.696732 B =10951.531544 C =11612.475226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.718 5.718 10 C 0.167 3.833 11 H 0.052 0.948 12 C -0.125 4.125 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.605 5.605 16 C 0.579 3.421 17 O -0.522 6.522 18 C -0.311 4.311 19 C 0.197 3.803 20 N -0.599 5.599 21 H 0.421 0.579 22 C 0.184 3.816 23 C -0.171 4.171 24 C -0.060 4.060 25 C -0.156 4.156 26 C -0.030 4.030 27 C -0.183 4.183 28 C 0.433 3.567 29 O -0.460 6.460 30 C 0.095 3.905 31 H 0.254 0.746 32 H 0.385 0.615 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.170 0.830 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.091 0.909 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.813 -31.740 5.579 33.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.359 5.359 10 C 0.056 3.944 11 H 0.070 0.930 12 C -0.163 4.163 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.340 5.340 16 C 0.366 3.634 17 O -0.397 6.397 18 C -0.323 4.323 19 C 0.066 3.934 20 N -0.208 5.208 21 H 0.258 0.742 22 C 0.083 3.917 23 C -0.192 4.192 24 C -0.079 4.079 25 C -0.175 4.175 26 C -0.048 4.048 27 C -0.187 4.187 28 C 0.315 3.685 29 O -0.338 6.338 30 C -0.029 4.029 31 H 0.064 0.936 32 H 0.219 0.781 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.187 0.813 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.110 0.890 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.682 -30.541 5.489 32.222 hybrid contribution -0.329 0.511 0.299 0.677 sum 8.353 -30.030 5.788 31.703 Atomic orbital electron populations 1.69676 1.05097 1.25548 1.57927 1.24736 0.95526 0.97731 1.02846 0.86117 0.79106 0.83986 0.77095 1.20341 1.21896 1.21839 1.19355 0.91221 0.83953 1.42406 0.90914 1.42378 1.05752 0.99629 1.88136 1.20503 0.94957 0.86360 0.92578 0.93013 1.21814 0.98566 0.94127 1.01793 1.21873 1.00956 0.98166 0.95893 1.21777 0.96339 0.89538 0.94090 1.48215 1.18873 1.11084 1.55814 1.17431 0.80564 0.87122 0.78325 1.90820 1.57984 1.42880 1.48055 1.21938 0.99208 0.94953 1.16177 1.21886 0.97352 0.82593 0.91560 1.40777 1.15346 1.10032 1.54604 0.74245 1.17893 0.84837 0.93846 0.95127 1.20694 0.98542 0.93419 1.06495 1.21113 0.92638 0.99792 0.94362 1.21166 1.00904 0.93072 1.02313 1.21197 0.93493 0.96360 0.93798 1.20261 0.96691 0.95224 1.06552 1.19391 0.85156 0.86522 0.77478 1.90752 1.57199 1.49207 1.36653 1.22754 0.97577 0.81573 1.01032 0.93611 0.78134 0.91448 0.92082 0.91164 0.91531 0.91619 0.90633 0.81270 0.84848 0.84983 0.85007 0.84111 0.89044 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 23.38 29.55 -169.99 -5.02 18.36 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 7 C -0.24 -6.87 9.93 -15.06 -0.15 -7.02 16 8 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.72 -18.33 5.12 -53.31 -0.27 -18.60 16 10 C 0.17 3.47 2.92 -67.81 -0.20 3.27 16 11 H 0.05 1.19 8.08 -51.93 -0.42 0.77 16 12 C -0.12 -2.01 5.36 -26.69 -0.14 -2.15 16 13 C -0.13 -1.63 6.08 -26.61 -0.16 -1.80 16 14 C 0.11 1.21 5.54 -3.70 -0.02 1.19 16 15 N -0.61 -9.77 2.97 -174.13 -0.52 -10.29 16 16 C 0.58 10.42 6.94 -12.65 -0.09 10.34 16 17 O -0.52 -12.12 16.38 5.24 0.09 -12.04 16 18 C -0.31 -4.27 4.78 -102.78 -0.49 -4.76 16 19 C 0.20 1.54 8.85 -16.73 -0.15 1.39 16 20 N -0.60 -3.10 5.21 -10.42 -0.05 -3.15 16 21 H 0.42 0.39 8.73 -40.82 -0.36 0.03 16 22 C 0.18 1.38 6.66 -83.94 -0.56 0.82 16 23 C -0.17 -0.84 9.86 -39.38 -0.39 -1.23 16 24 C -0.06 -0.30 10.01 -39.56 -0.40 -0.70 16 25 C -0.16 -1.02 10.03 -39.57 -0.40 -1.42 16 26 C -0.03 -0.29 9.65 -39.30 -0.38 -0.67 16 27 C -0.18 -2.04 5.89 -104.81 -0.62 -2.66 16 28 C 0.43 6.66 7.14 -32.20 -0.23 6.43 16 29 O -0.46 -9.12 16.89 5.04 0.09 -9.04 16 30 C 0.09 1.86 6.03 -3.71 -0.02 1.84 16 31 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.38 10.19 7.80 -40.82 -0.32 9.88 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.71 5.39 -51.93 -0.28 0.43 16 39 H 0.17 0.81 7.70 -52.49 -0.40 0.41 16 40 H 0.13 0.24 8.06 -52.48 -0.42 -0.18 16 41 H 0.13 0.30 8.06 -52.49 -0.42 -0.13 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.14 1.41 7.79 -52.49 -0.41 1.00 16 44 H 0.09 2.14 7.00 -51.93 -0.36 1.77 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -39.82 373.31 -9.73 -49.55 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.90 Total: 4.99 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -4.48 Total: 2.42 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.12 Total: -59.87 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.17 Total: -21.07 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.82 -9.73 -49.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999592707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.814 kcal (2) G-P(sol) polarization free energy of solvation -39.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds