Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99951 * 2 1 4 4 H 1.48493 * 109.47382 * 180.27457 * 3 2 1 5 5 H 1.48499 * 109.47027 * 300.28010 * 3 2 1 6 6 H 1.48504 * 109.46747 * 60.27808 * 3 2 1 7 7 C 1.38806 * 120.00029 * 180.28156 * 2 1 3 8 8 H 1.08009 * 119.99691 * 179.72497 * 7 2 1 9 9 N 1.36934 * 120.00201 * 359.72108 * 7 2 1 10 10 C 1.46498 * 120.00215 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.50173 * 34.92923 * 10 9 7 12 12 C 1.53039 * 109.50329 * 154.99726 * 10 9 7 13 13 C 1.53037 * 109.54259 * 181.31288 * 12 10 9 14 14 C 1.53194 * 109.31490 * 298.63961 * 13 12 10 15 15 N 1.46922 * 108.77628 * 54.62993 * 14 13 12 16 16 C 1.34779 * 120.63280 * 126.41549 * 15 14 13 17 17 O 1.21486 * 120.00568 * 174.11348 * 16 15 14 18 18 C 1.48349 * 119.99496 * 354.11604 * 16 15 14 19 19 C 1.41914 * 126.84171 * 173.42456 * 18 16 15 20 20 C 1.36722 * 103.81408 * 179.85468 * 19 18 16 21 21 C 1.47859 * 126.81619 * 180.12362 * 20 19 18 22 22 C 1.39565 * 120.13968 * 0.03228 * 21 20 19 23 23 C 1.37965 * 119.84842 * 179.71422 * 22 21 20 24 24 C 1.38361 * 120.14462 * 0.58109 * 23 22 21 25 25 C 1.38362 * 120.28808 * 359.66767 * 24 23 22 26 26 C 1.37956 * 120.14214 * 0.05235 * 25 24 23 27 27 O 1.34456 * 106.36057 * 0.40169 * 20 19 18 28 28 N 1.20873 * 111.74496 * 359.72477 * 27 20 19 29 29 C 1.46930 * 118.74263 * 306.39507 * 15 14 13 30 30 H 0.96995 * 120.00044 * 359.71999 * 1 2 3 31 31 H 0.96993 * 119.99872 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.45934 * 301.33969 * 12 10 9 33 33 H 1.09003 * 109.45704 * 61.30595 * 12 10 9 34 34 H 1.09004 * 109.49705 * 58.58462 * 13 12 10 35 35 H 1.08993 * 109.49895 * 178.68631 * 13 12 10 36 36 H 1.08992 * 109.58706 * 174.42049 * 14 13 12 37 37 H 1.09003 * 109.58004 * 294.70341 * 14 13 12 38 38 H 1.08000 * 128.09643 * 359.97438 * 19 18 16 39 39 H 1.07990 * 120.07627 * 359.97438 * 22 21 20 40 40 H 1.07999 * 119.93166 * 180.29510 * 23 22 21 41 41 H 1.07998 * 119.85638 * 179.69874 * 24 23 22 42 42 H 1.07995 * 119.92537 * 180.02562 * 25 24 23 43 43 H 1.08005 * 120.07046 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.58275 * 293.82014 * 29 15 14 45 45 H 1.08998 * 109.59073 * 173.39403 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0067 5 1 1.8863 2.3994 -1.2091 6 1 1.8965 2.3935 1.2159 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2020 -0.0104 9 7 1.3257 -2.3880 -0.0060 10 6 2.0581 -3.6567 -0.0116 11 1 2.9719 -3.5519 0.5734 12 6 1.1837 -4.7543 0.5990 13 6 1.9600 -6.0729 0.6235 14 6 2.3145 -6.4789 -0.8105 15 7 3.0310 -5.3687 -1.4529 16 6 4.2315 -5.5695 -2.0318 17 8 4.7649 -4.6712 -2.6519 18 6 4.9015 -6.8876 -1.9117 19 6 6.0929 -7.2991 -2.5638 20 6 6.2830 -8.5782 -2.1198 21 6 7.3904 -9.4874 -2.4848 22 6 8.3827 -9.0631 -3.3697 23 6 9.4166 -9.9143 -3.7015 24 6 9.4644 -11.1902 -3.1684 25 6 8.4809 -11.6187 -2.2945 26 6 7.4449 -10.7753 -1.9502 27 8 5.2595 -8.8472 -1.2904 28 7 4.5080 -7.9062 -1.1866 29 6 2.4138 -4.0353 -1.4529 30 1 -0.4850 0.8400 0.0041 31 1 0.3557 -2.3880 -0.0015 32 1 0.9089 -4.4757 1.6163 33 1 0.2815 -4.8753 -0.0006 34 1 2.8750 -5.9457 1.2022 35 1 1.3452 -6.8486 1.0797 36 1 2.9513 -7.3633 -0.7930 37 1 1.4016 -6.6968 -1.3648 38 1 6.7071 -6.7334 -3.2488 39 1 8.3438 -8.0693 -3.7905 40 1 10.1877 -9.5857 -4.3824 41 1 10.2731 -11.8544 -3.4351 42 1 8.5242 -12.6156 -1.8816 43 1 6.6775 -11.1112 -1.2683 44 1 1.5089 -4.0516 -2.0603 45 1 3.1161 -3.3075 -1.8592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999647393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = 80.317267 kcal Electronic energy + Delta-G solvation = -28540.101514 eV Core-core repulsion = 24526.671987 eV Total energy + Delta-G solvation = -4013.429526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.27251 -39.90787 -39.54474 -37.36720 -34.71499 -34.25995 -33.51947 -32.24129 -31.46703 -31.15829 -29.97801 -28.32594 -26.12065 -24.32608 -24.08226 -23.84206 -22.64906 -22.17764 -21.84207 -20.22448 -19.23162 -18.12051 -17.98441 -17.26947 -17.08803 -16.70248 -15.75182 -15.65804 -15.29760 -15.03368 -14.57611 -14.31086 -14.21407 -14.01527 -13.80584 -13.59413 -13.49176 -13.43521 -13.40728 -12.91158 -12.45911 -12.32096 -12.03593 -11.77483 -11.55296 -11.27471 -10.94563 -10.84676 -10.72662 -10.67148 -10.58610 -10.35778 -10.18376 -10.05457 -9.83276 -9.64990 -9.48167 -9.10206 -8.80370 -8.40849 -7.01477 -5.79561 -3.09509 0.16274 0.88464 1.09948 1.76280 2.46949 2.93292 3.17298 3.33662 3.44057 3.50404 3.52793 3.74901 4.03719 4.39375 4.45964 4.56775 4.58481 4.69814 4.72615 4.83613 4.92465 5.10147 5.14324 5.18917 5.33505 5.34807 5.47811 5.50150 5.57081 5.59982 5.80359 5.89253 5.90565 5.91694 5.98471 6.00619 6.08208 6.18267 6.22165 6.36757 6.38860 6.46442 6.70003 6.80166 6.97926 7.48568 7.71115 7.76772 8.17507 8.38461 9.50392 10.03919 10.39587 11.42639 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021584 B = 0.002165 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.937367 B =12930.285461 C =13897.930697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.125 4.125 14 C 0.077 3.923 15 N -0.587 5.587 16 C 0.588 3.412 17 O -0.524 6.524 18 C -0.006 4.006 19 C -0.166 4.166 20 C 0.010 3.990 21 C -0.022 4.022 22 C -0.089 4.089 23 C -0.117 4.117 24 C -0.107 4.107 25 C -0.119 4.119 26 C -0.093 4.093 27 O 0.117 5.883 28 N -0.325 5.325 29 C 0.092 3.908 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.183 0.817 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.066 0.934 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.654 -27.425 -5.154 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.166 4.166 13 C -0.164 4.164 14 C -0.046 4.046 15 N -0.320 5.320 16 C 0.372 3.628 17 O -0.399 6.399 18 C -0.164 4.164 19 C -0.188 4.188 20 C -0.053 4.053 21 C -0.023 4.023 22 C -0.107 4.107 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.137 4.137 26 C -0.112 4.112 27 O 0.045 5.955 28 N -0.029 5.029 29 C -0.032 4.032 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.200 0.800 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.084 0.916 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.957 -26.880 -4.665 31.113 hybrid contribution 0.507 1.278 -0.513 1.467 sum 15.464 -25.602 -5.178 30.355 Atomic orbital electron populations 1.69673 1.05116 1.25680 1.57446 1.24759 0.95539 0.97788 1.02627 0.86108 0.78950 0.83944 0.77175 1.20425 1.21761 1.21829 1.19322 0.91144 0.83950 1.42984 0.90973 1.42382 1.05840 0.99533 1.87963 1.20492 0.95085 0.86568 0.92134 0.93067 1.21850 0.98704 0.94166 1.01832 1.21817 1.00768 0.97998 0.95770 1.22529 0.97968 0.90426 0.93665 1.48171 1.17917 1.11749 1.54127 1.17013 0.81266 0.84357 0.80135 1.90804 1.64997 1.42535 1.41520 1.23567 0.97353 0.96152 0.99337 1.22606 0.97967 0.94215 1.04006 1.22419 0.92101 0.95001 0.95785 1.17604 0.92292 0.92668 0.99762 1.21182 0.93069 1.00353 0.96137 1.21110 0.98218 0.93919 1.00274 1.21374 0.98584 0.96123 0.96415 1.21133 0.94340 0.99994 0.98197 1.21323 0.98640 0.92331 0.98874 1.84870 1.26938 1.33877 1.49784 1.73885 1.13049 0.96341 1.19585 1.22942 0.97989 0.80746 1.01489 0.93492 0.78001 0.91316 0.91999 0.91740 0.90918 0.86426 0.91554 0.79958 0.85009 0.85118 0.85537 0.85257 0.84881 0.91577 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 7 C -0.24 -6.84 9.93 -15.06 -0.15 -6.99 16 8 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.72 -18.05 5.12 -53.31 -0.27 -18.33 16 10 C 0.17 3.45 2.92 -67.81 -0.20 3.26 16 11 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 12 C -0.13 -2.11 5.35 -26.69 -0.14 -2.25 16 13 C -0.12 -1.70 6.08 -26.61 -0.16 -1.87 16 14 C 0.08 1.07 6.33 -3.71 -0.02 1.05 16 15 N -0.59 -9.98 2.97 -173.69 -0.52 -10.49 16 16 C 0.59 10.28 7.71 -12.10 -0.09 10.19 16 17 O -0.52 -10.71 16.39 5.38 0.09 -10.62 16 18 C -0.01 -0.09 6.91 -82.62 -0.57 -0.66 16 19 C -0.17 -1.91 10.35 -38.72 -0.40 -2.31 16 20 C 0.01 0.10 7.15 -36.19 -0.26 -0.16 16 21 C -0.02 -0.18 5.87 -104.97 -0.62 -0.79 16 22 C -0.09 -0.60 9.58 -39.19 -0.38 -0.98 16 23 C -0.12 -0.64 10.03 -39.64 -0.40 -1.03 16 24 C -0.11 -0.53 10.04 -39.49 -0.40 -0.92 16 25 C -0.12 -0.63 10.03 -39.64 -0.40 -1.03 16 26 C -0.09 -0.62 9.73 -39.19 -0.38 -1.00 16 27 O 0.12 1.28 11.01 16.07 0.18 1.46 16 28 N -0.32 -4.17 8.53 33.35 0.28 -3.89 16 29 C 0.09 1.82 6.00 -3.71 -0.02 1.79 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.39 10.19 7.80 -40.82 -0.32 9.87 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.12 1.55 3.79 -71.70 -0.27 1.28 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.18 1.77 7.46 -52.49 -0.39 1.38 16 39 H 0.13 0.74 7.15 -52.49 -0.38 0.37 16 40 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 41 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 42 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.13 0.74 7.96 -52.48 -0.42 0.32 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.09 2.07 7.04 -51.93 -0.37 1.70 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -33.00 375.95 -9.47 -42.47 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.91 Total: 7.50 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -4.68 Total: -4.11 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.22 Total: -60.15 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.27 Total: -9.17 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.00 -9.47 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999647393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.784 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds