Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00200 * 2 1 4 4 H 1.48506 * 109.47167 * 89.99948 * 3 2 1 5 5 H 1.48499 * 109.47080 * 330.00081 * 3 2 1 6 6 H 1.48503 * 109.47324 * 209.99979 * 3 2 1 7 7 C 1.38814 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00115 * 323.54363 * 7 2 1 9 9 N 1.36938 * 120.00015 * 143.54858 * 7 2 1 10 10 C 1.46930 * 120.62755 * 331.83490 * 9 7 2 11 11 C 1.52763 * 109.00464 * 233.58316 * 10 9 7 12 12 C 1.53047 * 109.38089 * 305.58723 * 11 10 9 13 13 C 1.53043 * 109.53795 * 61.24418 * 12 11 10 14 14 H 1.09000 * 109.49926 * 58.58367 * 13 12 11 15 15 N 1.46500 * 109.49670 * 178.68170 * 13 12 11 16 16 C 1.34775 * 119.99847 * 204.83242 * 15 13 12 17 17 O 1.21651 * 120.00057 * 0.02562 * 16 15 13 18 18 C 1.47133 * 119.99748 * 179.97438 * 16 15 13 19 19 N 1.35878 * 126.62208 * 356.02381 * 18 16 15 20 20 C 1.29926 * 108.74594 * 180.02562 * 19 18 16 21 21 O 1.34048 * 109.78159 * 359.97438 * 20 19 18 22 22 C 1.34771 * 108.23240 * 359.72808 * 21 20 19 23 23 C 1.47581 * 126.75890 * 180.29589 * 22 21 20 24 24 C 1.39681 * 120.15224 * 129.59852 * 23 22 21 25 25 C 1.37930 * 119.84235 * 179.74239 * 24 23 22 26 26 C 1.38381 * 120.15310 * 0.53050 * 25 24 23 27 27 C 1.38374 * 120.31701 * 359.71964 * 26 25 24 28 28 C 1.37934 * 120.15446 * 0.02562 * 27 26 25 29 29 C 1.46926 * 120.62955 * 152.10852 * 9 7 2 30 30 H 0.96998 * 120.00053 * 175.90257 * 1 2 3 31 31 H 1.09000 * 109.58534 * 353.41592 * 10 9 7 32 32 H 1.08990 * 109.58885 * 113.84467 * 10 9 7 33 33 H 1.08995 * 109.56396 * 185.55435 * 11 10 9 34 34 H 1.08996 * 109.36058 * 65.49729 * 11 10 9 35 35 H 1.08992 * 109.45987 * 301.22249 * 12 11 10 36 36 H 1.08997 * 109.44602 * 181.25437 * 12 11 10 37 37 H 0.96998 * 119.99684 * 24.83683 * 15 13 12 38 38 H 1.08006 * 125.11140 * 180.02562 * 20 19 18 39 39 H 1.08005 * 120.08205 * 359.97438 * 24 23 22 40 40 H 1.08005 * 119.92786 * 180.23122 * 25 24 23 41 41 H 1.07998 * 119.84150 * 179.69894 * 26 25 24 42 42 H 1.08001 * 119.92439 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.07654 * 179.97438 * 28 27 26 44 44 H 1.08998 * 109.58472 * 246.15459 * 29 9 7 45 45 H 1.08994 * 109.58624 * 6.44053 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 1.4477 2.6526 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.6287 -2.0458 0.5567 9 7 3.1787 -1.3186 -0.7040 10 6 3.4159 -0.4997 -1.9007 11 6 3.7837 -1.4166 -3.0659 12 6 4.9671 -2.2997 -2.6634 13 6 4.5728 -3.1699 -1.4677 14 1 3.7104 -3.7820 -1.7318 15 7 5.6956 -4.0374 -1.1030 16 6 5.4682 -5.1979 -0.4566 17 8 4.3306 -5.5254 -0.1764 18 6 6.5958 -6.0694 -0.0908 19 7 7.9042 -5.8755 -0.4019 20 6 8.6005 -6.8547 0.0925 21 8 7.7905 -7.7090 0.7336 22 6 6.5293 -7.2428 0.6429 23 6 5.3158 -7.8622 1.2102 24 6 4.4341 -7.1007 1.9808 25 6 3.2991 -7.6848 2.5034 26 6 3.0386 -9.0245 2.2750 27 6 3.9103 -9.7862 1.5169 28 6 5.0465 -9.2140 0.9837 29 6 4.2163 -2.2689 -0.2811 30 1 -0.4850 -0.8379 -0.0600 31 1 2.5122 0.0575 -2.1472 32 1 4.2354 0.1938 -1.7123 33 1 4.0575 -0.8141 -3.9320 34 1 2.9288 -2.0451 -3.3149 35 1 5.8139 -1.6701 -2.3907 36 1 5.2447 -2.9387 -3.5016 37 1 6.6027 -3.7764 -1.3266 38 1 9.6712 -6.9636 0.0015 39 1 4.6386 -6.0561 2.1639 40 1 2.6145 -7.0964 3.0964 41 1 2.1509 -9.4779 2.6907 42 1 3.7006 -10.8312 1.3423 43 1 5.7262 -9.8098 0.3925 44 1 5.1024 -1.7225 0.0420 45 1 3.8414 -2.8768 0.5423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007457760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = 41.193731 kcal Electronic energy + Delta-G solvation = -29459.299434 eV Core-core repulsion = 25444.173384 eV Total energy + Delta-G solvation = -4015.126050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.55118 -39.61685 -39.06920 -37.50803 -35.09750 -34.36917 -32.65247 -32.50969 -31.09857 -30.74298 -29.63822 -28.62524 -24.98032 -24.76344 -23.60694 -22.78341 -22.24263 -21.73617 -21.29388 -20.28951 -19.64376 -18.38263 -17.31713 -17.22213 -16.99352 -16.28300 -15.95093 -15.55887 -15.01256 -14.94965 -14.59231 -14.37202 -14.03286 -13.89426 -13.62392 -13.59206 -13.56780 -13.28902 -12.86165 -12.76027 -12.33712 -11.98938 -11.68044 -11.66087 -11.50899 -11.30788 -11.06030 -11.01307 -10.60142 -10.58042 -10.19196 -9.98370 -9.87162 -9.64509 -9.57820 -9.22180 -9.05500 -8.89675 -8.55268 -8.18319 -6.95816 -6.31942 -3.19938 0.43585 1.28006 1.37113 1.86068 2.28106 3.20590 3.35275 3.54153 3.60271 3.62306 3.74732 3.82173 4.31178 4.66448 4.69459 4.73548 4.81102 4.95844 5.05565 5.14260 5.20239 5.23766 5.32019 5.35583 5.47327 5.50165 5.58607 5.71137 5.81615 5.87599 5.89862 6.01917 6.11181 6.22691 6.29879 6.33145 6.37709 6.38840 6.50989 6.56749 6.67893 6.75799 6.82606 6.85315 7.03176 7.16559 7.72644 8.13419 8.34998 8.50760 9.09059 9.69489 10.28890 11.08392 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.003219 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.029923 B = 8695.628593 C =10148.289943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.004 3.996 3 Si 1.016 2.984 4 H -0.298 1.298 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.361 4.361 8 H 0.064 0.936 9 N -0.594 5.594 10 C 0.139 3.861 11 C -0.135 4.135 12 C -0.115 4.115 13 C 0.126 3.874 14 H 0.089 0.911 15 N -0.704 5.704 16 C 0.594 3.406 17 O -0.519 6.519 18 C -0.052 4.052 19 N -0.461 5.461 20 C 0.174 3.826 21 O -0.193 6.193 22 C 0.079 3.921 23 C -0.033 4.033 24 C -0.041 4.041 25 C -0.119 4.119 26 C -0.099 4.099 27 C -0.130 4.130 28 C -0.089 4.089 29 C 0.142 3.858 30 H 0.267 0.733 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.403 0.597 38 H 0.256 0.744 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.019 0.981 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.875 -18.002 -0.041 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.200 4.200 3 Si 0.846 3.154 4 H -0.226 1.226 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.082 0.918 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.175 4.175 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.107 0.893 15 N -0.354 5.354 16 C 0.378 3.622 17 O -0.395 6.395 18 C -0.173 4.173 19 N -0.189 5.189 20 C -0.054 4.054 21 O -0.079 6.079 22 C 0.022 3.978 23 C -0.034 4.034 24 C -0.059 4.059 25 C -0.137 4.137 26 C -0.117 4.117 27 C -0.148 4.148 28 C -0.108 4.108 29 C 0.014 3.986 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.237 0.763 38 H 0.271 0.729 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.037 0.963 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.066 -16.092 -0.109 22.740 hybrid contribution 0.764 -2.001 0.112 2.145 sum 16.831 -18.093 0.003 24.711 Atomic orbital electron populations 1.70890 1.06980 1.29802 1.45824 1.26104 0.95896 1.00700 0.97266 0.84617 0.76592 0.77319 0.76896 1.22638 1.22061 1.19584 1.20051 0.98303 0.98152 1.32346 0.91799 1.44261 1.16923 1.44156 1.26465 1.21338 0.99211 0.92435 0.85659 1.22002 0.97344 0.98922 0.99209 1.21667 0.99087 0.97949 0.96627 1.21763 0.88245 0.91256 0.96624 0.89281 1.45922 1.11297 1.20174 1.58057 1.16624 0.86203 0.80756 0.78634 1.90902 1.21231 1.73256 1.54066 1.22141 0.92056 0.97782 1.05360 1.70647 1.02320 1.24590 1.21364 1.27999 0.98508 0.84920 0.93947 1.84478 1.16578 1.47158 1.59686 1.21854 0.83120 0.93743 0.99046 1.17447 0.90803 0.93821 1.01293 1.21120 0.92710 0.99288 0.92798 1.21116 0.96951 0.95112 1.00517 1.21352 0.98911 0.94186 0.97230 1.20999 0.94722 1.00147 0.98908 1.21167 0.97677 0.93016 0.98910 1.21231 0.91824 0.91342 0.94178 0.92287 0.91435 0.95220 0.92245 0.91811 0.92017 0.92582 0.76277 0.72875 0.85399 0.85077 0.85615 0.85543 0.85856 0.96323 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.70 55.49 0.76 -27.04 16 2 C 0.00 0.13 4.80 -17.43 -0.08 0.05 16 3 Si 1.02 25.44 27.03 -169.99 -4.60 20.84 16 4 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.27 -6.17 4.78 56.52 0.27 -5.90 16 7 C -0.36 -10.35 9.69 -15.06 -0.15 -10.50 16 8 H 0.06 2.00 8.06 -52.49 -0.42 1.57 16 9 N -0.59 -14.57 2.71 -172.58 -0.47 -15.04 16 10 C 0.14 3.03 4.35 -3.93 -0.02 3.01 16 11 C -0.13 -2.38 6.07 -26.83 -0.16 -2.55 16 12 C -0.12 -1.81 5.36 -26.68 -0.14 -1.95 16 13 C 0.13 2.28 2.60 -67.81 -0.18 2.10 16 14 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 15 N -0.70 -11.00 5.08 -54.85 -0.28 -11.28 16 16 C 0.59 9.93 7.72 -12.65 -0.10 9.83 16 17 O -0.52 -10.14 13.41 5.23 0.07 -10.07 16 18 C -0.05 -0.75 7.04 -82.35 -0.58 -1.33 16 19 N -0.46 -5.51 11.04 -11.04 -0.12 -5.64 16 20 C 0.17 1.47 13.16 51.96 0.68 2.16 16 21 O -0.19 -2.04 10.75 5.10 0.05 -1.98 16 22 C 0.08 1.03 6.85 -35.66 -0.24 0.79 16 23 C -0.03 -0.44 5.28 -105.01 -0.55 -0.99 16 24 C -0.04 -0.57 7.71 -39.16 -0.30 -0.87 16 25 C -0.12 -1.44 10.03 -39.64 -0.40 -1.84 16 26 C -0.10 -1.02 10.04 -39.48 -0.40 -1.41 16 27 C -0.13 -1.28 10.03 -39.64 -0.40 -1.68 16 28 C -0.09 -0.99 9.79 -39.15 -0.38 -1.38 16 29 C 0.14 3.03 6.09 -3.71 -0.02 3.00 16 30 H 0.27 8.24 8.73 -40.82 -0.36 7.89 16 31 H 0.07 1.59 5.86 -51.93 -0.30 1.28 16 32 H 0.03 0.63 6.61 -51.93 -0.34 0.29 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 5.44 8.34 -40.82 -0.34 5.09 16 38 H 0.26 0.68 8.06 -52.48 -0.42 0.25 16 39 H 0.13 1.89 7.54 -52.48 -0.40 1.49 16 40 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -34.48 370.99 -8.53 -43.02 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.12 Total: 5.14 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -3.42 Total: -3.55 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.11 Total: -58.99 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.12 Total: -12.05 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -4.60 Total: 20.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.48 -8.53 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007457760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.211 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds