Wall clock time and date at job start Sat Apr 11 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00376 * 2 1 4 4 H 1.48502 * 109.47503 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47256 * 300.00154 * 3 2 1 6 6 H 1.48504 * 109.47269 * 59.99960 * 3 2 1 7 7 C 1.38817 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99419 * 196.56146 * 7 2 1 9 9 N 1.36934 * 120.00146 * 16.56170 * 7 2 1 10 10 C 1.46927 * 120.62972 * 208.29110 * 9 7 2 11 11 C 1.53195 * 108.77146 * 233.62630 * 10 9 7 12 12 C 1.53034 * 109.31652 * 305.36695 * 11 10 9 13 13 C 1.53042 * 109.53731 * 61.36839 * 12 11 10 14 14 H 1.09000 * 109.52416 * 58.60234 * 13 12 11 15 15 N 1.46497 * 109.49714 * 178.68276 * 13 12 11 16 16 C 1.34775 * 119.99957 * 204.83778 * 15 13 12 17 17 O 1.21726 * 120.00183 * 359.97438 * 16 15 13 18 18 C 1.46400 * 120.00095 * 179.97438 * 16 15 13 19 19 O 1.35387 * 126.81925 * 6.04723 * 18 16 15 20 20 C 1.33653 * 107.95531 * 180.02562 * 19 18 16 21 21 N 1.30367 * 109.72812 * 359.71722 * 20 19 18 22 22 C 1.34545 * 109.01025 * 0.45384 * 21 20 19 23 23 C 1.48138 * 126.52529 * 179.82143 * 22 21 20 24 24 C 1.39472 * 120.12902 * 224.11398 * 23 22 21 25 25 C 1.37986 * 119.85777 * 180.25762 * 24 23 22 26 26 C 1.38349 * 120.13360 * 359.44202 * 25 24 23 27 27 C 1.38341 * 120.26966 * 0.56157 * 26 25 24 28 28 C 1.37975 * 120.13688 * 359.71991 * 27 26 25 29 29 C 1.46930 * 120.63004 * 28.31098 * 9 7 2 30 30 H 0.97001 * 119.99750 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.58768 * 353.41794 * 10 9 7 32 32 H 1.09006 * 109.58243 * 113.70263 * 10 9 7 33 33 H 1.09001 * 109.49494 * 65.32460 * 11 10 9 34 34 H 1.09000 * 109.49474 * 185.41362 * 11 10 9 35 35 H 1.09005 * 109.46206 * 301.34367 * 12 11 10 36 36 H 1.09004 * 109.45689 * 181.38788 * 12 11 10 37 37 H 0.96998 * 120.00157 * 24.83386 * 15 13 12 38 38 H 1.08003 * 125.13452 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.07439 * 359.97438 * 24 23 22 40 40 H 1.08005 * 119.93357 * 179.72331 * 25 24 23 41 41 H 1.08008 * 119.86050 * 180.28146 * 26 25 24 42 42 H 1.08008 * 119.93029 * 179.69571 * 27 26 25 43 43 H 1.08007 * 120.07021 * 179.97438 * 28 27 26 44 44 H 1.09000 * 109.58563 * 6.59058 * 29 9 7 45 45 H 1.08995 * 109.58836 * 246.15472 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0566 -1.2217 0.2661 9 7 1.3681 -2.3633 -0.3391 10 6 1.8132 -3.6520 0.2086 11 6 2.0628 -4.6209 -0.9516 12 6 0.8047 -4.7073 -1.8185 13 6 0.4887 -3.3277 -2.4009 14 1 1.3363 -2.9784 -2.9905 15 7 -0.6975 -3.4179 -3.2558 16 6 -0.8857 -2.5210 -4.2440 17 8 -0.0702 -1.6358 -4.4260 18 6 -2.0708 -2.6114 -5.0988 19 8 -3.1149 -3.4607 -4.9510 20 6 -3.9841 -3.2205 -5.9375 21 7 -3.5370 -2.2568 -6.6931 22 6 -2.3467 -1.8452 -6.2199 23 6 -1.4960 -0.7726 -6.7859 24 6 -0.1206 -0.9647 -6.9150 25 6 0.6673 0.0402 -7.4381 26 6 0.0939 1.2318 -7.8447 27 6 -1.2697 1.4281 -7.7192 28 6 -2.0672 0.4331 -7.1923 29 6 0.2211 -2.3442 -1.2572 30 1 -0.4850 0.8401 0.0004 31 1 2.7358 -3.5107 0.7716 32 1 1.0425 -4.0557 0.8652 33 1 2.8960 -4.2596 -1.5544 34 1 2.3006 -5.6084 -0.5560 35 1 -0.0337 -5.0450 -1.2092 36 1 0.9713 -5.4149 -2.6307 37 1 -1.3475 -4.1231 -3.1107 38 1 -4.9183 -3.7424 -6.0835 39 1 0.3275 -1.8961 -6.6020 40 1 1.7331 -0.1056 -7.5344 41 1 0.7142 2.0136 -8.2578 42 1 -1.7108 2.3624 -8.0339 43 1 -3.1317 0.5877 -7.0944 44 1 0.0934 -1.3400 -1.6614 45 1 -0.6803 -2.6426 -0.7221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007476583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:32 Heat of formation + Delta-G solvation = 14.403505 kcal Electronic energy + Delta-G solvation = -29844.081910 eV Core-core repulsion = 25827.794149 eV Total energy + Delta-G solvation = -4016.287762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.42916 -40.93965 -39.94584 -38.92740 -36.35556 -35.76668 -34.47318 -32.98527 -31.96911 -31.87120 -31.12885 -29.78497 -27.26624 -25.72246 -24.45768 -24.01308 -23.74039 -23.09768 -22.17633 -21.56421 -21.01430 -19.46033 -18.77541 -18.25835 -17.91644 -17.32124 -17.24393 -16.81019 -16.13530 -15.97067 -15.82288 -15.75177 -15.35026 -15.25177 -15.03484 -14.76299 -14.37325 -14.31793 -14.17004 -14.03405 -13.74146 -13.51364 -12.97242 -12.69257 -12.61972 -12.54772 -12.33600 -12.26327 -12.11698 -12.05848 -11.89798 -11.75851 -11.66566 -11.30271 -11.25273 -10.59766 -10.53310 -10.20027 -9.83621 -9.43306 -8.70910 -7.91267 -5.37598 -0.55061 0.38947 0.49047 1.28028 1.39501 1.40890 1.43837 1.52357 1.95502 2.11443 2.47767 2.81265 2.94930 3.25742 3.55341 3.63078 3.79290 3.92642 4.02170 4.04999 4.11413 4.19504 4.23194 4.29577 4.33168 4.45947 4.55319 4.58317 4.63887 4.80050 4.88927 4.89727 5.08022 5.08337 5.11015 5.16341 5.18751 5.27791 5.34645 5.48611 5.51099 5.52646 5.55755 5.60402 5.73075 6.01528 6.24545 6.35853 6.50674 7.00484 7.11014 7.82861 8.32029 9.13575 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.004172 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.786563 B = 6709.867268 C = 8465.543126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.049 4.049 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.299 1.299 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.134 3.866 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.133 3.867 14 H 0.061 0.939 15 N -0.695 5.695 16 C 0.596 3.404 17 O -0.536 6.536 18 C -0.116 4.116 19 O -0.184 6.184 20 C 0.232 3.768 21 N -0.512 5.512 22 C 0.107 3.893 23 C -0.053 4.053 24 C -0.072 4.072 25 C -0.137 4.137 26 C -0.107 4.107 27 C -0.132 4.132 28 C -0.098 4.098 29 C 0.179 3.821 30 H 0.246 0.754 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.413 0.587 38 H 0.317 0.683 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.129 0.871 44 H 0.044 0.956 45 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 -9.759 -15.107 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.787 3.213 4 H -0.185 1.185 5 H -0.226 1.226 6 H -0.213 1.213 7 C -0.393 4.393 8 H 0.088 0.912 9 N -0.332 5.332 10 C 0.010 3.990 11 C -0.159 4.159 12 C -0.145 4.145 13 C 0.027 3.973 14 H 0.079 0.921 15 N -0.345 5.345 16 C 0.381 3.619 17 O -0.414 6.414 18 C -0.172 4.172 19 O -0.070 6.070 20 C 0.007 3.993 21 N -0.239 5.239 22 C -0.015 4.015 23 C -0.054 4.054 24 C -0.091 4.091 25 C -0.155 4.155 26 C -0.125 4.125 27 C -0.149 4.149 28 C -0.117 4.117 29 C 0.052 3.948 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.250 0.750 38 H 0.332 0.668 39 H 0.127 0.873 40 H 0.157 0.843 41 H 0.171 0.829 42 H 0.172 0.828 43 H 0.147 0.853 44 H 0.063 0.937 45 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -6.165 -8.849 -15.650 19.006 hybrid contribution 0.024 0.584 1.011 1.168 sum -6.141 -8.265 -14.639 17.898 Atomic orbital electron populations 1.70170 1.06741 1.25468 1.55329 1.25782 0.95987 1.01543 1.01129 0.85324 0.79081 0.80252 0.76600 1.18490 1.22593 1.21328 1.19537 0.92816 0.86001 1.40916 0.91247 1.44241 1.35672 1.02970 1.50366 1.21200 0.97624 0.85627 0.94597 1.21894 0.96867 1.00135 0.97048 1.21657 0.99235 0.93750 0.99875 1.21647 0.86322 0.98352 0.90992 0.92060 1.45814 1.26141 1.31118 1.31441 1.16507 0.83056 0.82237 0.80069 1.90954 1.44498 1.34921 1.71071 1.23114 0.92565 0.99231 1.02296 1.84493 1.26248 1.49332 1.46938 1.29642 0.96141 0.93033 0.80500 1.70509 1.09379 1.13910 1.30085 1.20705 0.92358 0.96196 0.92251 1.17884 0.92288 0.92879 1.02319 1.21134 0.92219 0.99913 0.95807 1.21330 1.00632 0.93921 0.99586 1.21634 0.95498 0.97271 0.98110 1.21395 0.94037 0.99577 0.99925 1.21318 1.00502 0.92318 0.97512 1.20776 0.88105 0.97423 0.88518 0.94501 0.92525 0.96102 0.92729 0.88323 0.90777 0.89441 0.74992 0.66829 0.87267 0.84311 0.82922 0.82844 0.85267 0.93709 0.98412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.29 11.18 21.65 0.24 -58.05 16 2 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 3 Si 0.96 47.72 29.58 68.60 2.03 49.75 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.26 -15.01 9.58 84.04 0.81 -14.20 16 8 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 9 N -0.61 -31.27 2.99 -699.07 -2.09 -33.36 16 10 C 0.13 5.37 6.52 86.36 0.56 5.93 16 11 C -0.12 -3.63 6.08 30.67 0.19 -3.44 16 12 C -0.11 -3.08 5.35 30.62 0.16 -2.92 16 13 C 0.13 5.09 2.60 45.07 0.12 5.21 16 14 H 0.06 2.68 7.58 -2.39 -0.02 2.67 16 15 N -0.69 -23.16 5.08 -446.39 -2.27 -25.42 16 16 C 0.60 22.40 7.51 86.37 0.65 23.05 16 17 O -0.54 -24.39 12.91 -4.43 -0.06 -24.45 16 18 C -0.12 -3.69 7.21 24.48 0.18 -3.51 16 19 O -0.18 -4.25 10.57 -7.45 -0.08 -4.33 16 20 C 0.23 3.92 13.16 130.46 1.72 5.64 16 21 N -0.51 -13.16 11.28 -303.70 -3.43 -16.58 16 22 C 0.11 3.42 6.64 41.44 0.28 3.70 16 23 C -0.05 -1.76 5.43 -20.05 -0.11 -1.87 16 24 C -0.07 -2.40 7.58 22.51 0.17 -2.23 16 25 C -0.14 -3.92 10.03 22.24 0.22 -3.70 16 26 C -0.11 -2.63 10.04 22.32 0.22 -2.41 16 27 C -0.13 -3.25 10.03 22.23 0.22 -3.03 16 28 C -0.10 -2.87 9.78 22.50 0.22 -2.65 16 29 C 0.18 8.99 4.88 86.36 0.42 9.41 16 30 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.06 2.21 7.93 -2.39 -0.02 2.20 16 32 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.09 1.99 8.14 -2.38 -0.02 1.98 16 37 H 0.41 10.81 8.41 -92.71 -0.78 10.03 16 38 H 0.32 0.70 8.06 -2.91 -0.02 0.67 16 39 H 0.11 3.82 6.88 -2.91 -0.02 3.80 16 40 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 43 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.04 2.71 6.06 -2.39 -0.01 2.70 16 45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -81.31 374.48 1.04 -80.27 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.24 Total: 21.66 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.44 Total: 10.52 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -7.54 Total: -133.41 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.14 Total: -28.78 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -81.31 1.04 -80.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007476583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.674 kcal (2) G-P(sol) polarization free energy of solvation -81.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds