Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48497 * 109.46812 * 270.00210 * 3 2 1 5 5 H 1.48507 * 109.46940 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.47456 * 149.99774 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53036 * 109.34322 * 54.61625 * 11 10 9 13 13 C 1.53035 * 109.54208 * 298.68633 * 12 11 10 14 14 H 1.09008 * 109.46838 * 301.36435 * 13 12 11 15 15 N 1.46494 * 109.52558 * 181.29577 * 13 12 11 16 16 C 1.34783 * 119.99847 * 155.11155 * 15 13 12 17 17 O 1.21545 * 119.99949 * 359.97438 * 16 15 13 18 18 C 1.47925 * 119.99946 * 180.02562 * 16 15 13 19 19 C 1.38260 * 119.24482 * 180.02562 * 18 16 15 20 20 C 1.40692 * 118.65137 * 179.97438 * 19 18 16 21 21 C 1.40235 * 122.05218 * 180.02562 * 20 19 18 22 22 C 1.36313 * 119.47979 * 179.97438 * 21 20 19 23 23 C 1.39244 * 120.94351 * 0.02562 * 22 21 20 24 24 C 1.36358 * 121.06012 * 359.97438 * 23 22 21 25 25 C 1.40043 * 119.58959 * 359.97438 * 24 23 22 26 26 C 1.41356 * 121.85258 * 180.02562 * 25 24 23 27 27 O 1.35490 * 119.95171 * 0.02562 * 26 25 24 28 28 N 1.31387 * 120.09280 * 179.72890 * 26 25 24 29 29 C 1.46924 * 120.62987 * 207.68989 * 9 7 2 30 30 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58722 * 6.62827 * 10 9 7 32 32 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 33 33 H 1.09003 * 109.49294 * 174.58737 * 11 10 9 34 34 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 35 35 H 1.09004 * 109.45659 * 58.67099 * 12 11 10 36 36 H 1.09004 * 109.46253 * 178.62448 * 12 11 10 37 37 H 0.97001 * 120.00015 * 335.11127 * 15 13 12 38 38 H 1.08001 * 120.66866 * 359.94587 * 19 18 16 39 39 H 1.08002 * 120.25978 * 359.96571 * 21 20 19 40 40 H 1.08001 * 119.52723 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.46867 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.20476 * 180.02562 * 24 23 22 43 43 H 0.96698 * 114.00096 * 89.99614 * 27 26 25 44 44 H 1.08995 * 109.58607 * 353.37922 * 29 9 7 45 45 H 1.09010 * 109.58203 * 113.79897 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8189 -4.6906 -1.8594 13 6 2.0741 -4.6104 -0.9876 14 1 2.9079 -4.2407 -1.5844 15 7 2.3962 -5.9423 -0.4694 16 6 3.6629 -6.2406 -0.1185 17 8 4.5380 -5.4047 -0.2324 18 6 3.9884 -7.5856 0.4042 19 6 5.2928 -7.8746 0.7599 20 6 5.5882 -9.1575 1.2561 21 6 6.8859 -9.5269 1.6385 22 6 7.1130 -10.7844 2.1131 23 6 6.0754 -11.7065 2.2229 24 6 4.8024 -11.3796 1.8598 25 6 4.5312 -10.0964 1.3689 26 6 3.2296 -9.7064 0.9793 27 8 2.2026 -10.5847 1.0768 28 7 3.0132 -8.4915 0.5282 29 6 1.8192 -3.6546 0.1821 30 1 -0.4851 0.8401 -0.0004 31 1 0.0985 -1.3268 -1.6674 32 1 -0.6758 -2.6397 -0.7456 33 1 -0.3803 -3.3679 -3.0661 34 1 1.3488 -2.9479 -3.0106 35 1 -0.0201 -5.0374 -1.2561 36 1 0.9894 -5.3887 -2.6791 37 1 1.6979 -6.6094 -0.3789 38 1 6.0692 -7.1307 0.6585 39 1 7.6990 -8.8207 1.5575 40 1 8.1120 -11.0696 2.4083 41 1 6.2822 -12.6963 2.6024 42 1 4.0079 -12.1056 1.9511 43 1 1.7426 -10.5592 1.9269 44 1 2.7399 -3.5171 0.7490 45 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007496777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = 1.731460 kcal Electronic energy + Delta-G solvation = -28785.940941 eV Core-core repulsion = 24769.103678 eV Total energy + Delta-G solvation = -4016.837263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.42096 -39.57745 -38.29114 -37.50368 -36.66354 -34.31595 -32.71330 -32.36723 -31.57916 -30.42663 -29.94646 -28.52268 -25.24500 -24.94897 -24.38149 -22.52230 -22.26801 -21.99713 -20.60631 -19.56722 -18.88096 -18.31323 -17.87484 -16.88522 -16.65804 -16.18178 -15.72408 -15.48875 -14.88608 -14.76422 -14.66095 -14.35498 -14.05088 -13.87724 -13.74802 -13.40900 -13.35101 -13.06408 -12.41438 -12.36847 -12.34025 -12.19773 -12.09834 -11.77823 -11.63421 -11.06671 -10.86554 -10.77739 -10.47367 -10.35987 -10.21153 -10.17231 -9.86707 -9.83312 -9.58829 -9.55983 -9.46493 -8.78885 -8.41701 -8.32335 -6.63611 -5.74371 -3.16402 -0.16946 0.30220 1.41080 2.20413 3.03306 3.15699 3.33264 3.43029 3.49320 3.51957 3.74678 4.14057 4.18085 4.35100 4.46253 4.56910 4.62856 4.75859 4.91440 5.04275 5.29050 5.34001 5.36696 5.42547 5.50452 5.53594 5.60304 5.66853 5.79421 5.91662 5.95528 6.04926 6.12760 6.20709 6.30737 6.33240 6.58312 6.65784 6.71072 6.74242 6.88406 7.03001 7.05543 7.38466 7.41628 7.69176 7.83199 7.87009 8.39999 8.50641 9.26141 9.88492 10.44412 11.34306 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019585 B = 0.002376 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.330562 B =11781.830216 C =12697.835746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.124 3.876 14 H 0.087 0.913 15 N -0.699 5.699 16 C 0.566 3.434 17 O -0.529 6.529 18 C 0.086 3.914 19 C -0.094 4.094 20 C -0.022 4.022 21 C -0.102 4.102 22 C -0.098 4.098 23 C -0.115 4.115 24 C -0.083 4.083 25 C -0.109 4.109 26 C 0.352 3.648 27 O -0.473 6.473 28 N -0.483 5.483 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.089 0.911 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.406 0.594 38 H 0.158 0.842 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.404 0.596 44 H 0.058 0.942 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.906 -26.241 3.575 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.018 3.982 14 H 0.105 0.895 15 N -0.349 5.349 16 C 0.350 3.650 17 O -0.406 6.406 18 C -0.040 4.040 19 C -0.115 4.115 20 C -0.027 4.027 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.133 4.133 24 C -0.103 4.103 25 C -0.113 4.113 26 C 0.157 3.843 27 O -0.281 6.281 28 N -0.204 5.204 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.241 0.759 38 H 0.176 0.824 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.263 0.737 44 H 0.076 0.924 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.737 -25.247 2.670 26.850 hybrid contribution 0.573 0.234 0.754 0.976 sum 9.310 -25.013 3.424 26.908 Atomic orbital electron populations 1.70045 1.05223 1.25445 1.54171 1.25026 0.95309 0.98387 1.00997 0.86262 0.79152 0.83527 0.77715 1.21420 1.21820 1.20380 1.19242 0.92827 0.84669 1.41111 0.91510 1.44008 1.35599 1.01030 1.50396 1.20848 0.88575 0.98576 0.87899 1.22177 1.00454 0.95140 1.00111 1.21674 0.96724 0.98582 0.98307 1.21828 0.97998 0.81053 0.97275 0.89454 1.45999 1.09110 1.15944 1.63836 1.17747 0.83495 0.85350 0.78447 1.90830 1.47285 1.48119 1.54318 1.20732 0.89454 0.93505 1.00321 1.22250 0.97427 0.95954 0.95872 1.18077 0.93810 0.92990 0.97823 1.21077 0.95274 0.97231 0.98453 1.21056 0.99690 0.93321 0.97652 1.21019 0.92739 1.00019 0.99543 1.20953 0.97719 0.94642 0.96979 1.19044 0.93810 0.96039 1.02366 1.19103 0.85894 0.85954 0.93380 1.84726 1.46287 1.55262 1.41783 1.66855 1.37027 1.02006 1.14523 1.21179 0.97978 0.86778 0.92554 0.93689 0.89237 0.96272 0.92673 0.92411 0.92137 0.93002 0.75925 0.82438 0.84367 0.85150 0.85253 0.84451 0.73679 0.92369 0.96394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 11.19 55.49 0.62 -26.01 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.25 -7.11 9.59 -15.06 -0.14 -7.25 16 8 H 0.07 1.92 7.89 -52.49 -0.41 1.50 16 9 N -0.59 -15.28 3.00 -172.32 -0.52 -15.80 16 10 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 11 C -0.14 -2.68 6.08 -26.62 -0.16 -2.84 16 12 C -0.11 -1.97 5.36 -26.69 -0.14 -2.11 16 13 C 0.12 2.35 2.60 -67.82 -0.18 2.17 16 14 H 0.09 1.85 7.58 -51.92 -0.39 1.46 16 15 N -0.70 -11.48 5.07 -54.61 -0.28 -11.76 16 16 C 0.57 9.64 7.76 -12.29 -0.10 9.55 16 17 O -0.53 -10.64 15.93 5.33 0.08 -10.55 16 18 C 0.09 1.22 6.73 -83.09 -0.56 0.66 16 19 C -0.09 -1.14 9.41 -38.65 -0.36 -1.51 16 20 C -0.02 -0.23 5.74 -106.85 -0.61 -0.84 16 21 C -0.10 -0.79 9.81 -39.52 -0.39 -1.17 16 22 C -0.10 -0.59 9.95 -39.90 -0.40 -0.99 16 23 C -0.12 -0.67 9.95 -39.89 -0.40 -1.07 16 24 C -0.08 -0.59 9.58 -39.58 -0.38 -0.97 16 25 C -0.11 -1.06 5.76 -106.66 -0.61 -1.68 16 26 C 0.35 3.79 7.80 -16.56 -0.13 3.66 16 27 O -0.47 -3.89 12.83 -18.16 -0.23 -4.12 16 28 N -0.48 -6.33 9.47 -9.60 -0.09 -6.42 16 29 C 0.14 3.23 6.09 -3.71 -0.02 3.21 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.41 5.90 7.90 -40.82 -0.32 5.57 16 38 H 0.16 1.82 7.59 -52.49 -0.40 1.42 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 41 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.14 0.70 7.65 -52.49 -0.40 0.29 16 43 H 0.40 1.34 9.06 45.56 0.41 1.75 16 44 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 45 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -34.60 373.79 -9.68 -44.28 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.18 Total: 4.69 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -4.69 Total: 2.77 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.26 Total: -59.99 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.15 Total: -14.68 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.60 -9.68 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007496777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.010 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds