Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00198 * 2 1 4 4 H 1.48506 * 109.46881 * 274.88756 * 3 2 1 5 5 H 1.48497 * 109.47360 * 34.88287 * 3 2 1 6 6 H 1.48493 * 109.47311 * 154.88995 * 3 2 1 7 7 C 1.38810 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00294 * 339.73928 * 7 2 1 9 9 N 1.36941 * 119.99691 * 159.73523 * 7 2 1 10 10 C 1.46931 * 120.62942 * 152.78165 * 9 7 2 11 11 C 1.53192 * 108.77266 * 126.41363 * 10 9 7 12 12 C 1.53045 * 109.31193 * 54.63577 * 11 10 9 13 13 C 1.53033 * 109.53713 * 298.63164 * 12 11 10 14 14 H 1.09000 * 109.50325 * 301.41548 * 13 12 11 15 15 N 1.46495 * 109.49600 * 181.31633 * 13 12 11 16 16 C 1.34784 * 120.00122 * 155.16037 * 15 13 12 17 17 O 1.21590 * 119.99467 * 0.02562 * 16 15 13 18 18 C 1.47590 * 119.99915 * 179.97438 * 16 15 13 19 19 C 1.39806 * 120.00338 * 359.72624 * 18 16 15 20 20 C 1.36582 * 120.00129 * 179.80377 * 19 18 16 21 21 C 1.39809 * 119.99798 * 0.45272 * 20 19 18 22 22 C 1.47584 * 120.00186 * 179.76392 * 21 20 19 23 23 C 1.35952 * 126.59375 * 0.02562 * 22 21 20 24 24 N 1.34036 * 107.49354 * 180.02562 * 23 22 21 25 25 C 1.30424 * 108.92869 * 0.02562 * 24 23 22 26 26 O 1.33943 * 109.06352 * 359.73234 * 25 24 23 27 27 C 1.39800 * 120.00094 * 359.77760 * 21 20 19 28 28 C 1.36582 * 120.00461 * 0.02562 * 27 21 20 29 29 C 1.46926 * 120.63092 * 332.80577 * 9 7 2 30 30 H 0.97000 * 119.99793 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58662 * 246.20528 * 10 9 7 32 32 H 1.08998 * 109.58562 * 6.62839 * 10 9 7 33 33 H 1.09005 * 109.49367 * 174.58900 * 11 10 9 34 34 H 1.09003 * 109.49961 * 294.68481 * 11 10 9 35 35 H 1.08999 * 109.45586 * 178.60747 * 12 11 10 36 36 H 1.08994 * 109.44574 * 58.64847 * 12 11 10 37 37 H 0.97001 * 120.00347 * 335.16540 * 15 13 12 38 38 H 1.08002 * 120.00105 * 0.02742 * 19 18 16 39 39 H 1.08002 * 120.00471 * 180.21258 * 20 19 18 40 40 H 1.07997 * 126.25361 * 359.96762 * 23 22 21 41 41 H 1.08000 * 125.46688 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.99965 * 179.97438 * 27 21 20 43 43 H 1.08000 * 120.00468 * 179.97438 * 28 27 21 44 44 H 1.08999 * 109.58787 * 353.37114 * 29 9 7 45 45 H 1.08997 * 109.58413 * 113.65678 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3945 2.1060 -1.3951 5 1 1.5032 2.6206 0.8007 6 1 3.5956 1.4125 0.5941 7 6 2.0102 -1.2022 0.0005 8 1 1.5203 -2.1084 0.3248 9 7 3.3160 -1.2391 -0.4102 10 6 4.2335 -2.2657 0.1029 11 6 4.8801 -2.9867 -1.0841 12 6 5.5403 -1.9565 -2.0034 13 6 4.4777 -0.9961 -2.5423 14 1 3.7177 -1.5604 -3.0828 15 7 5.1056 -0.0298 -3.4468 16 6 4.3727 0.5710 -4.4052 17 8 3.1903 0.3113 -4.5188 18 6 5.0053 1.5450 -5.3161 19 6 6.3633 1.8486 -5.1811 20 6 6.9495 2.7469 -6.0266 21 6 6.1894 3.3699 -7.0210 22 6 6.8216 4.3445 -7.9313 23 6 8.1241 4.7339 -7.9237 24 7 8.2827 5.6292 -8.9085 25 6 7.1393 5.8015 -9.5118 26 8 6.2182 5.0183 -8.9355 27 6 4.8303 3.0699 -7.1528 28 6 4.2449 2.1686 -6.3100 29 6 3.8264 -0.2525 -1.3719 30 1 -0.4850 0.8401 -0.0004 31 1 5.0067 -1.7945 0.7095 32 1 3.6781 -2.9827 0.7075 33 1 5.6337 -3.6846 -0.7191 34 1 4.1163 -3.5323 -1.6384 35 1 6.0224 -2.4690 -2.8359 36 1 6.2865 -1.3945 -1.4419 37 1 6.0488 0.1776 -3.3560 38 1 6.9497 1.3702 -4.4106 39 1 7.9994 2.9790 -5.9246 40 1 8.8908 4.3861 -7.2473 41 1 6.9643 6.4659 -10.3450 42 1 4.2431 3.5514 -7.9207 43 1 3.1949 1.9371 -6.4116 44 1 3.0026 0.3587 -1.7404 45 1 4.5647 0.3845 -0.8849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007657717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = 44.904153 kcal Electronic energy + Delta-G solvation = -28725.857504 eV Core-core repulsion = 24710.892350 eV Total energy + Delta-G solvation = -4014.965154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.71815 -40.37347 -38.85519 -37.47820 -35.23677 -34.44603 -33.10259 -32.65815 -31.56535 -30.70638 -29.74132 -28.60257 -25.30455 -24.90250 -23.78250 -22.92123 -22.19149 -22.14606 -21.47733 -20.33748 -19.63174 -18.62788 -17.76803 -17.01796 -16.85633 -16.51557 -16.13871 -15.54277 -15.09349 -14.93554 -14.69172 -14.53556 -14.19531 -14.03273 -13.91236 -13.80821 -13.50051 -13.32176 -12.98661 -12.81385 -12.55980 -12.31771 -12.20502 -11.85533 -11.60590 -11.46832 -11.12705 -11.02819 -10.77947 -10.62514 -10.28900 -10.23714 -10.20500 -9.77590 -9.74818 -9.48311 -9.45193 -8.93546 -8.55587 -8.45787 -6.96845 -5.91921 -3.28486 -0.02471 1.03065 1.34622 2.20283 2.24452 2.89568 3.21498 3.39348 3.48991 3.51739 3.68424 3.75850 4.15258 4.39025 4.48993 4.52602 4.56799 4.66630 4.91447 4.95852 5.04011 5.13871 5.17242 5.23809 5.35153 5.41039 5.45530 5.48420 5.59635 5.79525 5.81040 5.87151 5.92678 5.98962 6.02609 6.06604 6.17924 6.24130 6.39916 6.41807 6.51416 6.61599 6.62568 6.76289 6.91624 7.20547 7.63450 7.97525 8.35522 8.36081 8.95166 9.74576 10.09958 11.23854 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.002521 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.133192 B =11103.250520 C =11928.535079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.116 4.116 13 C 0.125 3.875 14 H 0.094 0.906 15 N -0.719 5.719 16 C 0.547 3.453 17 O -0.519 6.519 18 C -0.114 4.114 19 C -0.083 4.083 20 C -0.101 4.101 21 C -0.002 4.002 22 C -0.002 4.002 23 C -0.019 4.019 24 N -0.487 5.487 25 C 0.174 3.826 26 O -0.197 6.197 27 C -0.105 4.105 28 C -0.057 4.057 29 C 0.120 3.880 30 H 0.263 0.737 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.393 0.607 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.188 0.812 41 H 0.252 0.748 42 H 0.135 0.865 43 H 0.145 0.855 44 H 0.078 0.922 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.908 6.432 -16.447 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.392 4.392 8 H 0.105 0.895 9 N -0.325 5.325 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.020 3.980 14 H 0.112 0.888 15 N -0.370 5.370 16 C 0.333 3.667 17 O -0.395 6.395 18 C -0.117 4.117 19 C -0.102 4.102 20 C -0.119 4.119 21 C -0.003 4.003 22 C -0.055 4.055 23 C -0.159 4.159 24 N -0.215 5.215 25 C -0.051 4.051 26 O -0.083 6.083 27 C -0.123 4.123 28 C -0.076 4.076 29 C -0.007 4.007 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.228 0.772 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.205 0.795 41 H 0.268 0.732 42 H 0.153 0.847 43 H 0.163 0.837 44 H 0.096 0.904 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 18.357 6.616 -16.663 25.659 hybrid contribution 0.339 0.978 0.076 1.038 sum 18.695 7.595 -16.588 26.122 Atomic orbital electron populations 1.69830 1.05707 1.26553 1.52576 1.25256 0.95209 0.97571 0.99137 0.86967 0.80038 0.84969 0.77001 1.21495 1.23128 1.19582 1.18890 0.84783 0.94773 1.40708 0.89528 1.44283 1.08691 1.33106 1.46385 1.20989 0.92499 0.91324 0.93260 1.22006 0.99629 0.97328 0.98261 1.21684 0.97385 0.97320 0.99060 1.21820 0.95404 0.89774 0.91021 0.88843 1.46063 1.12959 1.44621 1.33402 1.18192 0.86660 0.81142 0.80713 1.90871 1.14883 1.62584 1.71186 1.20309 0.94280 0.99156 0.97945 1.20980 0.93780 0.96900 0.98518 1.20684 1.00048 0.96811 0.94380 1.17787 0.93631 0.94736 0.94110 1.21477 0.92483 0.99142 0.92374 1.23383 0.95285 0.97925 0.99347 1.70358 1.25936 1.16912 1.08269 1.28202 0.81391 0.95659 0.99805 1.84489 1.40944 1.44990 1.37845 1.21000 0.93495 0.98008 0.99760 1.21056 1.01057 0.93295 0.92147 1.21698 0.97692 0.92363 0.88943 0.92747 0.95883 0.91600 0.92086 0.91589 0.92378 0.92077 0.77204 0.84685 0.84681 0.79500 0.73187 0.84731 0.83740 0.90368 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.65 13.97 55.49 0.78 -27.87 16 2 C 0.03 0.83 5.24 -17.43 -0.09 0.74 16 3 Si 0.88 23.36 24.34 -169.99 -4.14 19.22 16 4 H -0.29 -7.69 6.70 56.52 0.38 -7.31 16 5 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 6 H -0.27 -6.90 6.45 56.52 0.36 -6.54 16 7 C -0.26 -7.53 10.04 -15.06 -0.15 -7.68 16 8 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 9 N -0.60 -14.40 2.77 -172.32 -0.48 -14.88 16 10 C 0.15 2.76 6.52 -3.71 -0.02 2.73 16 11 C -0.13 -2.02 6.08 -26.61 -0.16 -2.18 16 12 C -0.12 -1.64 5.35 -26.69 -0.14 -1.78 16 13 C 0.13 2.24 2.60 -67.82 -0.18 2.06 16 14 H 0.09 1.94 7.58 -51.93 -0.39 1.55 16 15 N -0.72 -10.62 5.03 -54.72 -0.28 -10.90 16 16 C 0.55 9.11 7.73 -12.44 -0.10 9.02 16 17 O -0.52 -11.18 16.00 5.29 0.08 -11.10 16 18 C -0.11 -1.46 5.88 -104.91 -0.62 -2.08 16 19 C -0.08 -0.78 9.48 -39.59 -0.38 -1.15 16 20 C -0.10 -0.83 9.51 -39.59 -0.38 -1.21 16 21 C 0.00 -0.02 5.88 -104.91 -0.62 -0.63 16 22 C 0.00 -0.02 7.06 -36.59 -0.26 -0.27 16 23 C -0.02 -0.17 11.29 -17.41 -0.20 -0.36 16 24 N -0.49 -4.51 11.27 -14.66 -0.17 -4.68 16 25 C 0.17 1.20 13.21 52.16 0.69 1.89 16 26 O -0.20 -1.74 10.57 4.27 0.05 -1.70 16 27 C -0.10 -1.08 9.67 -39.60 -0.38 -1.46 16 28 C -0.06 -0.70 9.53 -39.59 -0.38 -1.08 16 29 C 0.12 2.69 3.77 -3.71 -0.01 2.67 16 30 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.39 4.19 6.61 -40.82 -0.27 3.92 16 38 H 0.14 0.90 6.38 -52.49 -0.34 0.57 16 39 H 0.14 0.70 7.02 -52.49 -0.37 0.33 16 40 H 0.19 1.10 7.29 -52.49 -0.38 0.72 16 41 H 0.25 0.44 8.06 -52.49 -0.42 0.01 16 42 H 0.13 1.19 7.93 -52.49 -0.42 0.78 16 43 H 0.14 1.86 7.64 -52.49 -0.40 1.46 16 44 H 0.08 2.05 4.50 -51.93 -0.23 1.82 16 45 H 0.03 0.54 6.97 -51.93 -0.36 0.18 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -37.42 368.06 -7.70 -45.12 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.73 Total: 2.01 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.37 Total: -0.78 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.14 Total: -58.33 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.13 Total: -12.79 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.14 Total: 19.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.42 -7.70 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007657717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.027 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds