Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86798 * 120.00223 * 2 1 4 4 H 1.48498 * 109.47303 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46907 * 299.99776 * 3 2 1 6 6 H 1.48496 * 109.47349 * 59.99503 * 3 2 1 7 7 C 1.38813 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00024 * 197.37005 * 7 2 1 9 9 N 1.36940 * 120.00012 * 17.37260 * 7 2 1 10 10 C 1.46928 * 120.63010 * 207.65914 * 9 7 2 11 11 C 1.53192 * 108.77446 * 233.63110 * 10 9 7 12 12 C 1.53038 * 109.31327 * 305.36812 * 11 10 9 13 13 C 1.53042 * 109.54078 * 61.36301 * 12 11 10 14 14 H 1.08997 * 109.52059 * 58.60655 * 13 12 11 15 15 N 1.46500 * 109.49649 * 178.68294 * 13 12 11 16 16 C 1.34772 * 119.99710 * 204.83608 * 15 13 12 17 17 O 1.21592 * 120.00224 * 0.02562 * 16 15 13 18 18 C 1.47593 * 120.00088 * 179.97438 * 16 15 13 19 19 C 1.39811 * 120.00466 * 180.02562 * 18 16 15 20 20 C 1.36582 * 120.00071 * 179.97438 * 19 18 16 21 21 C 1.39806 * 119.99801 * 359.97438 * 20 19 18 22 22 C 1.47587 * 119.99704 * 179.97438 * 21 20 19 23 23 C 1.35943 * 126.59899 * 179.97438 * 22 21 20 24 24 N 1.34042 * 107.49644 * 180.21569 * 23 22 21 25 25 C 1.30418 * 108.92496 * 359.59799 * 24 23 22 26 26 O 1.33937 * 109.06932 * 0.40473 * 25 24 23 27 27 C 1.39804 * 120.00416 * 0.26626 * 21 20 19 28 28 C 1.36582 * 120.00007 * 359.49395 * 27 21 20 29 29 C 1.46928 * 120.62736 * 27.68264 * 9 7 2 30 30 H 0.97010 * 120.00133 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58408 * 353.41688 * 10 9 7 32 32 H 1.08999 * 109.58471 * 113.70086 * 10 9 7 33 33 H 1.08999 * 109.49822 * 65.31830 * 11 10 9 34 34 H 1.09005 * 109.49764 * 185.38254 * 11 10 9 35 35 H 1.09008 * 109.46024 * 301.34159 * 12 11 10 36 36 H 1.08999 * 109.46115 * 181.38998 * 12 11 10 37 37 H 0.97003 * 119.99867 * 24.84241 * 15 13 12 38 38 H 1.07997 * 119.99825 * 359.96115 * 19 18 16 39 39 H 1.07998 * 119.99945 * 180.02562 * 20 19 18 40 40 H 1.07995 * 126.25360 * 359.94628 * 23 22 21 41 41 H 1.08001 * 125.46902 * 180.15609 * 25 24 23 42 42 H 1.07994 * 119.99825 * 179.72500 * 27 21 20 43 43 H 1.07997 * 119.99790 * 180.25125 * 28 27 21 44 44 H 1.08993 * 109.59065 * 6.58634 * 29 9 7 45 45 H 1.09000 * 109.69996 * 246.22469 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0532 -1.2234 0.2798 9 7 1.3723 -2.3612 -0.3530 10 6 1.8195 -3.6548 0.1813 11 6 2.0752 -4.6097 -0.9890 12 6 0.8199 -4.6898 -1.8606 13 6 0.5017 -3.3046 -2.4282 14 1 1.3500 -2.9462 -3.0113 15 7 -0.6818 -3.3884 -3.2876 16 6 -0.8697 -2.4808 -4.2661 17 8 -0.0567 -1.5928 -4.4359 18 6 -2.0617 -2.5656 -5.1323 19 6 -2.2564 -1.6244 -6.1477 20 6 -3.3592 -1.7032 -6.9496 21 6 -4.2931 -2.7253 -6.7554 22 6 -5.4851 -2.8101 -7.6215 23 6 -6.4724 -3.7420 -7.5526 24 7 -7.3592 -3.4617 -8.5179 25 6 -6.9612 -2.4001 -9.1626 26 8 -5.8054 -1.9757 -8.6355 27 6 -4.1011 -3.6634 -5.7368 28 6 -2.9958 -3.5876 -4.9380 29 6 0.2280 -2.3348 -1.2743 30 1 -0.4851 0.8401 -0.0004 31 1 2.7400 -3.5172 0.7486 32 1 1.0481 -4.0681 0.8310 33 1 2.9091 -4.2393 -1.5852 34 1 2.3152 -5.6009 -0.6040 35 1 -0.0194 -5.0367 -1.2577 36 1 0.9908 -5.3876 -2.6803 37 1 -1.3302 -4.0971 -3.1523 38 1 -1.5348 -0.8350 -6.2979 39 1 -3.5093 -0.9765 -7.7343 40 1 -6.5294 -4.5614 -6.8514 41 1 -7.4784 -1.9397 -9.9914 42 1 -4.8248 -4.4503 -5.5840 43 1 -2.8454 -4.3148 -4.1538 44 1 0.0985 -1.3265 -1.6674 45 1 -0.6756 -2.6402 -0.7468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007657718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = 38.654827 kcal Electronic energy + Delta-G solvation = -28574.737855 eV Core-core repulsion = 24559.501709 eV Total energy + Delta-G solvation = -4015.236145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.65631 -40.21549 -38.65425 -37.19404 -35.17590 -34.25064 -33.02180 -32.60518 -31.46020 -30.06756 -29.49931 -28.36795 -25.27882 -24.75998 -23.69926 -22.47807 -22.13697 -22.03975 -21.41641 -20.09885 -19.44156 -18.52856 -17.59942 -16.95732 -16.78755 -16.42446 -15.92049 -15.18655 -14.93468 -14.80570 -14.49394 -14.38737 -14.06619 -13.92623 -13.81670 -13.57776 -13.35527 -13.13356 -12.85499 -12.47764 -12.40463 -12.29982 -11.88713 -11.79648 -11.37066 -11.02775 -10.96612 -10.79468 -10.72625 -10.50220 -10.23838 -10.17187 -10.02465 -9.94463 -9.57075 -9.49369 -9.38663 -8.63228 -8.43508 -8.38166 -6.66406 -5.75713 -3.18746 0.06863 1.12810 1.42795 2.26583 2.31130 3.02695 3.39367 3.44272 3.50579 3.52017 3.81621 3.82059 4.23161 4.48777 4.53921 4.57927 4.61061 4.80954 5.01701 5.06702 5.24439 5.31881 5.38354 5.44386 5.48926 5.53146 5.61358 5.66499 5.69176 5.87175 5.97832 6.05513 6.11172 6.11917 6.15701 6.31622 6.40372 6.46786 6.50762 6.67446 6.75358 6.88472 6.94878 7.26469 7.27976 7.71905 7.81505 7.87144 8.47180 8.54914 9.22774 9.86889 10.41372 11.32278 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.002392 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.888393 B =11705.172639 C =12840.628825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.084 0.916 15 N -0.713 5.713 16 C 0.549 3.451 17 O -0.524 6.524 18 C -0.109 4.109 19 C -0.058 4.058 20 C -0.105 4.105 21 C -0.005 4.005 22 C 0.000 4.000 23 C -0.021 4.021 24 N -0.487 5.487 25 C 0.173 3.827 26 O -0.197 6.197 27 C -0.101 4.101 28 C -0.083 4.083 29 C 0.166 3.834 30 H 0.253 0.747 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.391 0.609 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.188 0.812 41 H 0.252 0.748 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.095 0.905 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.591 -10.487 -15.535 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.015 3.985 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.102 0.898 15 N -0.364 5.364 16 C 0.335 3.665 17 O -0.401 6.401 18 C -0.113 4.113 19 C -0.077 4.077 20 C -0.123 4.123 21 C -0.005 4.005 22 C -0.053 4.053 23 C -0.161 4.161 24 N -0.215 5.215 25 C -0.052 4.052 26 O -0.083 6.083 27 C -0.119 4.119 28 C -0.102 4.102 29 C 0.039 3.961 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.226 0.774 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.205 0.795 41 H 0.268 0.732 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.114 0.886 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.596 -9.975 -15.775 21.973 hybrid contribution 0.406 0.886 0.116 0.982 sum -11.191 -9.088 -15.659 21.284 Atomic orbital electron populations 1.70022 1.05340 1.25447 1.53438 1.25034 0.95278 0.98515 1.00507 0.86239 0.79411 0.83972 0.77239 1.20198 1.21415 1.21768 1.19186 0.92763 0.84786 1.41793 0.91528 1.43971 1.36016 1.01647 1.49461 1.20961 0.97760 0.86873 0.92866 1.21998 0.96945 0.99368 0.98750 1.21680 0.98997 0.95954 0.98792 1.22029 0.86861 0.97032 0.92955 0.89834 1.46010 1.26396 1.30608 1.33353 1.18103 0.85514 0.82299 0.80593 1.90839 1.45054 1.33680 1.70538 1.20352 0.96113 0.97033 0.97770 1.21032 0.96741 0.97560 0.92351 1.20983 0.93677 0.97655 0.99977 1.17774 0.90976 0.97276 0.94520 1.21499 0.98549 0.93126 0.92091 1.23377 0.91282 1.01573 0.99863 1.70352 1.29220 1.14317 1.07581 1.28177 0.83774 0.93068 1.00221 1.84488 1.37070 1.48106 1.38645 1.20679 0.98264 0.98510 0.94414 1.20993 0.93151 0.97346 0.98686 1.21097 0.88774 0.99020 0.87225 0.93706 0.92611 0.96380 0.92078 0.92580 0.92224 0.93044 0.77433 0.83856 0.84863 0.79503 0.73243 0.84758 0.84672 0.88646 0.96452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 11.19 55.49 0.62 -26.17 16 2 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 3 Si 0.90 22.53 29.59 -169.99 -5.03 17.50 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.26 -7.16 9.59 -15.06 -0.14 -7.31 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -14.84 2.99 -172.32 -0.52 -15.35 16 10 C 0.14 2.90 6.52 -3.71 -0.02 2.88 16 11 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 12 C -0.12 -1.81 5.35 -26.69 -0.14 -1.95 16 13 C 0.12 2.22 2.60 -67.81 -0.18 2.04 16 14 H 0.08 1.82 7.58 -51.93 -0.39 1.43 16 15 N -0.71 -11.28 5.03 -54.71 -0.28 -11.55 16 16 C 0.55 9.53 7.73 -12.45 -0.10 9.43 16 17 O -0.52 -11.54 15.99 5.28 0.08 -11.46 16 18 C -0.11 -1.47 5.88 -104.90 -0.62 -2.09 16 19 C -0.06 -0.74 9.53 -39.59 -0.38 -1.12 16 20 C -0.10 -1.13 9.67 -39.59 -0.38 -1.51 16 21 C 0.00 -0.05 5.88 -104.91 -0.62 -0.66 16 22 C 0.00 0.00 7.06 -36.59 -0.26 -0.25 16 23 C -0.02 -0.19 11.29 -17.41 -0.20 -0.39 16 24 N -0.49 -4.70 11.27 -14.66 -0.17 -4.86 16 25 C 0.17 1.25 13.21 52.16 0.69 1.94 16 26 O -0.20 -1.82 10.57 4.25 0.04 -1.78 16 27 C -0.10 -0.89 9.51 -39.59 -0.38 -1.26 16 28 C -0.08 -0.84 9.48 -39.59 -0.38 -1.21 16 29 C 0.17 4.00 4.89 -3.71 -0.02 3.99 16 30 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.39 4.69 6.61 -40.82 -0.27 4.42 16 38 H 0.14 1.90 7.64 -52.49 -0.40 1.50 16 39 H 0.13 1.24 7.93 -52.49 -0.42 0.82 16 40 H 0.19 1.19 7.29 -52.49 -0.38 0.81 16 41 H 0.25 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.13 0.78 7.02 -52.49 -0.37 0.42 16 43 H 0.14 1.03 6.38 -52.49 -0.34 0.69 16 44 H 0.10 2.73 6.03 -51.93 -0.31 2.42 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -35.72 374.67 -8.75 -44.47 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.80 Total: 3.29 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -3.36 Total: 0.26 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.34 Total: -57.94 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.13 Total: -13.23 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.72 -8.75 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007657718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.129 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds