Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48492 * 109.46977 * 240.00061 * 3 2 1 5 5 H 1.48504 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47196 * 119.99727 * 3 2 1 7 7 C 1.38812 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99795 * 197.35486 * 7 2 1 9 9 N 1.36939 * 120.00171 * 17.36455 * 7 2 1 10 10 C 1.46926 * 120.62966 * 27.67920 * 9 7 2 11 11 C 1.53195 * 108.77946 * 126.38791 * 10 9 7 12 12 C 1.53048 * 109.30574 * 54.63239 * 11 10 9 13 13 C 1.53035 * 109.53916 * 298.63717 * 12 11 10 14 14 H 1.09004 * 109.49964 * 301.37694 * 13 12 11 15 15 N 1.46503 * 109.49717 * 181.32031 * 13 12 11 16 16 C 1.34775 * 120.00263 * 155.06318 * 15 13 12 17 17 O 1.21480 * 119.99851 * 0.02562 * 16 15 13 18 18 C 1.48285 * 120.00066 * 180.02562 * 16 15 13 19 19 C 1.35679 * 118.87220 * 180.24835 * 18 16 15 20 20 C 1.42053 * 119.93466 * 180.25956 * 19 18 16 21 21 O 1.21931 * 121.06927 * 179.77395 * 20 19 18 22 22 C 1.47220 * 117.86356 * 359.50525 * 20 19 18 23 23 C 1.39591 * 121.35778 * 180.27888 * 22 20 19 24 24 C 1.36645 * 119.68963 * 180.02562 * 23 22 20 25 25 C 1.38882 * 120.55795 * 359.94828 * 24 23 22 26 26 C 1.37705 * 120.72304 * 0.02963 * 25 24 23 27 27 C 1.39292 * 119.72088 * 359.97438 * 26 25 24 28 28 N 1.36468 * 118.87341 * 359.97438 * 18 16 15 29 29 H 0.97007 * 119.18104 * 0.02562 * 28 18 16 30 30 C 1.46930 * 120.60757 * 207.65389 * 9 7 2 31 31 H 0.97003 * 120.00142 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.58602 * 6.60089 * 10 9 7 33 33 H 1.09002 * 109.70630 * 246.24983 * 10 9 7 34 34 H 1.08994 * 109.49768 * 294.68597 * 11 10 9 35 35 H 1.08990 * 109.52691 * 174.59822 * 11 10 9 36 36 H 1.09005 * 109.45611 * 178.61569 * 12 11 10 37 37 H 1.08998 * 109.45694 * 58.66371 * 12 11 10 38 38 H 0.97003 * 119.99574 * 335.06676 * 15 13 12 39 39 H 1.08002 * 120.03275 * 0.02562 * 19 18 16 40 40 H 1.07992 * 120.15446 * 359.97438 * 23 22 20 41 41 H 1.08006 * 119.71605 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.63450 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.14147 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.56054 * 113.80430 * 30 9 7 45 45 H 1.09003 * 109.60985 * 353.38448 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2795 9 7 1.3723 -2.3612 -0.3529 10 6 0.2279 -2.3349 -1.2740 11 6 0.5010 -3.3051 -2.4277 12 6 0.8190 -4.6902 -1.8595 13 6 2.0745 -4.6101 -0.9882 14 1 2.9086 -4.2407 -1.5849 15 7 2.3962 -5.9422 -0.4704 16 6 3.6629 -6.2417 -0.1208 17 8 4.5379 -5.4067 -0.2347 18 6 3.9885 -7.5902 0.4027 19 6 5.2703 -7.8653 0.7525 20 6 5.6084 -9.1517 1.2514 21 8 6.7543 -9.4225 1.5680 22 6 4.5298 -10.1453 1.3796 23 6 4.7792 -11.4294 1.8670 24 6 3.7524 -12.3250 1.9713 25 6 2.4633 -11.9680 1.5976 26 6 2.1947 -10.7066 1.1148 27 6 3.2257 -9.7772 0.9997 28 7 2.9877 -8.5103 0.5216 29 1 2.0860 -8.2646 0.2617 30 6 1.8200 -3.6545 0.1817 31 1 -0.4850 0.8401 0.0004 32 1 0.0985 -1.3266 -1.6673 33 1 -0.6758 -2.6399 -0.7462 34 1 1.3496 -2.9474 -3.0106 35 1 -0.3793 -3.3676 -3.0672 36 1 0.9896 -5.3883 -2.6791 37 1 -0.0202 -5.0367 -1.2564 38 1 1.6974 -6.6088 -0.3792 39 1 6.0334 -7.1083 0.6481 40 1 5.7790 -11.7139 2.1594 41 1 3.9448 -13.3185 2.3487 42 1 1.6628 -12.6875 1.6867 43 1 1.1888 -10.4391 0.8265 44 1 1.0478 -4.0684 0.8302 45 1 2.7410 -3.5171 0.7484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007845544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = -0.833300 kcal Electronic energy + Delta-G solvation = -28890.602020 eV Core-core repulsion = 24873.653541 eV Total energy + Delta-G solvation = -4016.948479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62019 -39.94504 -38.31873 -37.78210 -37.14702 -34.67535 -32.62924 -32.43938 -31.23542 -30.57837 -30.25290 -28.86007 -25.44296 -25.35773 -24.01588 -22.75666 -22.37073 -22.18199 -20.73507 -19.80806 -18.92958 -18.61776 -18.38434 -16.89458 -16.45891 -15.93657 -15.81695 -15.74591 -15.11997 -14.82989 -14.77013 -14.44144 -14.37900 -14.07686 -13.86466 -13.63744 -13.53546 -13.48697 -13.25286 -12.57103 -12.53183 -12.36393 -12.29908 -11.98388 -11.73181 -11.24042 -11.02502 -10.84497 -10.46308 -10.38425 -10.34505 -10.01274 -9.91401 -9.82029 -9.77029 -9.71172 -9.45531 -9.13576 -8.49280 -8.14070 -6.77076 -5.85206 -3.27841 0.15116 0.52889 1.16009 2.27398 2.52563 2.71503 2.94019 3.38091 3.42761 3.45787 3.64847 3.96177 4.17542 4.30638 4.43838 4.48554 4.67875 4.74259 4.86870 5.06473 5.12710 5.25655 5.39569 5.41769 5.47100 5.48126 5.49545 5.52409 5.77460 5.88668 5.92496 5.95883 6.05798 6.12193 6.20033 6.28659 6.40616 6.43854 6.50198 6.54572 6.56486 6.68327 6.79123 7.23216 7.29251 7.55805 7.58108 7.76954 7.88490 8.38289 9.14829 9.76556 10.31148 11.23614 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002401 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.559894 B =11657.231908 C =12493.247159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.586 5.586 10 C 0.166 3.834 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.124 3.876 14 H 0.093 0.907 15 N -0.713 5.713 16 C 0.548 3.452 17 O -0.494 6.494 18 C 0.158 3.842 19 C -0.236 4.236 20 C 0.418 3.582 21 O -0.484 6.484 22 C -0.203 4.203 23 C -0.026 4.026 24 C -0.163 4.163 25 C -0.053 4.053 26 C -0.175 4.175 27 C 0.203 3.797 28 N -0.605 5.605 29 H 0.415 0.585 30 C 0.141 3.859 31 H 0.255 0.745 32 H 0.091 0.909 33 H 0.020 0.980 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.389 0.611 39 H 0.166 0.834 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.018 0.982 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -24.582 -0.651 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.308 5.308 10 C 0.040 3.960 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.019 3.981 14 H 0.111 0.889 15 N -0.365 5.365 16 C 0.331 3.669 17 O -0.367 6.367 18 C 0.048 3.952 19 C -0.263 4.263 20 C 0.305 3.695 21 O -0.366 6.366 22 C -0.207 4.207 23 C -0.045 4.045 24 C -0.182 4.182 25 C -0.072 4.072 26 C -0.196 4.196 27 C 0.100 3.900 28 N -0.220 5.220 29 H 0.253 0.747 30 C 0.013 3.987 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.223 0.777 39 H 0.184 0.816 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.036 0.964 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.507 -23.865 -0.562 23.877 hybrid contribution -0.604 0.607 -0.065 0.859 sum -0.097 -23.258 -0.627 23.267 Atomic orbital electron populations 1.70024 1.05268 1.25750 1.53735 1.25027 0.95310 0.98474 1.00650 0.86335 0.78918 0.83033 0.78329 1.20891 1.21606 1.20766 1.19179 0.92868 0.84602 1.41754 0.91483 1.43983 1.35578 1.00924 1.50357 1.20863 0.88546 0.98725 0.87833 1.22186 1.00647 0.94895 1.00206 1.21696 0.96423 0.99005 0.98214 1.21968 0.98408 0.80120 0.97595 0.88914 1.46157 1.08288 1.16578 1.65449 1.18065 0.83698 0.85905 0.79272 1.90891 1.46679 1.47252 1.51840 1.20274 0.89674 0.88828 0.96410 1.22498 0.95453 1.00541 1.07799 1.18515 0.87827 0.86650 0.76533 1.90719 1.21443 1.81194 1.43211 1.20366 0.93121 0.97862 1.09357 1.20885 1.00139 0.90768 0.92697 1.20893 0.92785 1.00528 1.04001 1.21144 0.97071 0.95117 0.93870 1.20708 0.97943 0.93881 1.07081 1.17881 0.94122 0.84025 0.93979 1.41229 1.11066 1.09812 1.59877 0.74710 1.21178 0.98178 0.86961 0.92334 0.93522 0.89117 0.96220 0.92258 0.92510 0.92922 0.92117 0.77693 0.81628 0.84348 0.85197 0.84948 0.84680 0.96377 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 11.19 55.49 0.62 -24.98 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 9 N -0.59 -14.17 3.00 -172.32 -0.52 -14.69 16 10 C 0.17 3.70 5.31 -3.71 -0.02 3.68 16 11 C -0.14 -2.38 6.08 -26.61 -0.16 -2.54 16 12 C -0.12 -1.61 5.35 -26.69 -0.14 -1.76 16 13 C 0.12 1.96 2.60 -67.82 -0.18 1.78 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 15 N -0.71 -8.45 5.07 -54.50 -0.28 -8.72 16 16 C 0.55 7.45 7.77 -12.13 -0.09 7.36 16 17 O -0.49 -8.88 15.84 5.38 0.09 -8.79 16 18 C 0.16 1.79 6.75 -82.59 -0.56 1.24 16 19 C -0.24 -3.10 9.49 -39.04 -0.37 -3.47 16 20 C 0.42 5.72 6.97 -34.47 -0.24 5.48 16 21 O -0.48 -7.94 17.34 4.98 0.09 -7.85 16 22 C -0.20 -2.22 5.89 -104.81 -0.62 -2.83 16 23 C -0.03 -0.24 9.61 -39.65 -0.38 -0.62 16 24 C -0.16 -1.08 9.97 -39.92 -0.40 -1.48 16 25 C -0.05 -0.30 10.01 -39.54 -0.40 -0.69 16 26 C -0.18 -1.08 9.91 -39.38 -0.39 -1.47 16 27 C 0.20 1.77 6.66 -84.00 -0.56 1.21 16 28 N -0.61 -4.89 5.32 -7.43 -0.04 -4.93 16 29 H 0.42 2.07 6.78 -40.82 -0.28 1.79 16 30 C 0.14 2.85 6.09 -3.71 -0.02 2.83 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.39 3.05 6.73 -40.82 -0.27 2.77 16 39 H 0.17 2.33 7.48 -52.49 -0.39 1.94 16 40 H 0.14 1.23 7.78 -52.49 -0.41 0.82 16 41 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 42 H 0.13 0.39 8.06 -52.48 -0.42 -0.04 16 43 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.32 7.93 -51.93 -0.41 0.90 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -33.86 371.17 -10.06 -43.92 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.83 Total: 2.17 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -4.76 Total: 1.64 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.21 Total: -53.32 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.17 Total: -16.64 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.86 -10.06 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007845544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.082 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds