Wall clock time and date at job start Sat Apr 11 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47160 * 300.00131 * 3 2 1 6 6 H 1.48501 * 109.47059 * 60.00013 * 3 2 1 7 7 C 1.38813 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00283 * 197.36797 * 7 2 1 9 9 N 1.36938 * 120.00021 * 17.37260 * 7 2 1 10 10 C 1.46928 * 120.62984 * 27.67063 * 9 7 2 11 11 C 1.53197 * 108.77349 * 126.39336 * 10 9 7 12 12 C 1.53038 * 109.31126 * 54.63432 * 11 10 9 13 13 C 1.53042 * 109.54089 * 298.63540 * 12 11 10 14 14 H 1.08993 * 109.49468 * 301.38061 * 13 12 11 15 15 N 1.46497 * 109.49727 * 181.31393 * 13 12 11 16 16 C 1.34777 * 120.00002 * 155.33854 * 15 13 12 17 17 O 1.21587 * 120.00089 * 359.72870 * 16 15 13 18 18 C 1.47555 * 120.00424 * 179.72705 * 16 15 13 19 19 C 1.38916 * 120.29407 * 359.97438 * 18 16 15 20 20 C 1.40552 * 118.06683 * 179.97438 * 19 18 16 21 21 C 1.40549 * 121.13437 * 180.02562 * 20 19 18 22 22 C 1.36145 * 119.63954 * 179.97438 * 21 20 19 23 23 C 1.39324 * 120.83466 * 0.02562 * 22 21 20 24 24 C 1.36142 * 121.07737 * 359.97438 * 23 22 21 25 25 C 1.40528 * 119.82558 * 359.97438 * 24 23 22 26 26 N 1.33814 * 120.74009 * 180.02562 * 25 24 23 27 27 C 1.31380 * 121.66174 * 179.74712 * 26 25 24 28 28 O 1.35409 * 119.32187 * 180.24330 * 27 26 25 29 29 C 1.46932 * 120.60449 * 207.65508 * 9 7 2 30 30 H 0.97005 * 119.99429 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58171 * 6.61294 * 10 9 7 32 32 H 1.08996 * 109.70863 * 246.24915 * 10 9 7 33 33 H 1.09003 * 109.49421 * 294.68669 * 11 10 9 34 34 H 1.08992 * 109.52600 * 174.60706 * 11 10 9 35 35 H 1.08997 * 109.45884 * 178.61513 * 12 11 10 36 36 H 1.09006 * 109.45842 * 58.65885 * 12 11 10 37 37 H 0.97000 * 120.00395 * 335.06748 * 15 13 12 38 38 H 1.08000 * 120.96695 * 0.02562 * 19 18 16 39 39 H 1.07995 * 120.17640 * 0.02562 * 21 20 19 40 40 H 1.07998 * 119.58302 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.46278 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.09216 * 179.97438 * 24 23 22 43 43 H 0.96701 * 113.99823 * 270.25591 * 28 27 26 44 44 H 1.09000 * 109.55985 * 113.80294 * 29 9 7 45 45 H 1.09000 * 109.61645 * 353.37579 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2797 9 7 1.3723 -2.3612 -0.3530 10 6 0.2279 -2.3348 -1.2741 11 6 0.5011 -3.3049 -2.4279 12 6 0.8191 -4.6900 -1.8599 13 6 2.0746 -4.6100 -0.9885 14 1 2.9086 -4.2405 -1.5851 15 7 2.3961 -5.9422 -0.4707 16 6 3.6618 -6.2399 -0.1159 17 8 4.5377 -5.4044 -0.2302 18 6 3.9846 -7.5797 0.4113 19 6 2.9886 -8.5388 0.5449 20 6 3.3483 -9.7996 1.0515 21 6 2.3927 -10.8175 1.2129 22 6 2.7748 -12.0277 1.7059 23 6 4.1020 -12.2705 2.0534 24 6 5.0534 -11.3073 1.9100 25 6 4.6996 -10.0452 1.4036 26 7 5.6200 -9.0853 1.2547 27 6 5.3102 -7.9007 0.7784 28 8 6.2805 -6.9660 0.6430 29 6 1.8200 -3.6545 0.1815 30 1 -0.4849 0.8401 -0.0004 31 1 0.0986 -1.3265 -1.6674 32 1 -0.6758 -2.6399 -0.7465 33 1 1.3498 -2.9471 -3.0107 34 1 -0.3791 -3.3673 -3.0676 35 1 0.9898 -5.3881 -2.6794 36 1 -0.0202 -5.0366 -1.2568 37 1 1.6974 -6.6088 -0.3795 38 1 1.9677 -8.3223 0.2669 39 1 1.3611 -10.6409 0.9465 40 1 2.0398 -12.8093 1.8291 41 1 4.3806 -13.2385 2.4428 42 1 6.0775 -11.5127 2.1848 43 1 6.4028 -6.4100 1.4246 44 1 1.0478 -4.0684 0.8300 45 1 2.7409 -3.5172 0.7482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008115486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:07 Heat of formation + Delta-G solvation = 5.666768 kcal Electronic energy + Delta-G solvation = -29022.198536 eV Core-core repulsion = 25005.531921 eV Total energy + Delta-G solvation = -4016.666615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37763 -39.63807 -38.38301 -37.20354 -36.06861 -34.45574 -33.86051 -32.41073 -30.83312 -30.47085 -30.07091 -28.51268 -25.30753 -25.08850 -24.01226 -22.66378 -22.26231 -22.00614 -20.63622 -19.56748 -19.21822 -18.38025 -17.79810 -16.78868 -16.66019 -16.01148 -15.66990 -15.28477 -14.93148 -14.79155 -14.60434 -14.51739 -14.00557 -13.95152 -13.73743 -13.58169 -13.39431 -13.12263 -12.44047 -12.40777 -12.28151 -12.06279 -11.85154 -11.74029 -11.62883 -11.12958 -10.96312 -10.88154 -10.79238 -10.28362 -10.25781 -10.18768 -9.92320 -9.86210 -9.65409 -9.44771 -9.06324 -8.85582 -8.64741 -8.41610 -6.69133 -5.79307 -3.21274 -0.16174 0.25064 1.47831 2.22782 3.10361 3.17210 3.35785 3.39023 3.47090 3.51321 3.73938 4.11477 4.16166 4.30434 4.39349 4.51880 4.69322 4.76598 4.88262 4.98781 5.24268 5.27955 5.29710 5.36172 5.48408 5.52290 5.58941 5.60512 5.68054 5.88611 5.97197 6.01282 6.04595 6.11135 6.20075 6.36530 6.49057 6.58117 6.61315 6.65703 6.80321 6.94406 7.32879 7.34495 7.57349 7.63238 7.64686 7.83074 8.32054 8.45352 9.21287 9.83513 10.38702 11.29456 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.002480 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.763728 B =11287.999829 C =12105.267603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.126 3.874 14 H 0.089 0.911 15 N -0.717 5.717 16 C 0.556 3.444 17 O -0.509 6.509 18 C -0.193 4.193 19 C -0.006 4.006 20 C -0.123 4.123 21 C -0.082 4.082 22 C -0.125 4.125 23 C -0.088 4.088 24 C -0.102 4.102 25 C 0.167 3.833 26 N -0.502 5.502 27 C 0.396 3.604 28 O -0.459 6.459 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.391 0.609 38 H 0.149 0.851 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.409 0.591 44 H 0.017 0.983 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 -25.418 2.036 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.107 0.893 15 N -0.369 5.369 16 C 0.341 3.659 17 O -0.385 6.385 18 C -0.200 4.200 19 C -0.032 4.032 20 C -0.125 4.125 21 C -0.101 4.101 22 C -0.143 4.143 23 C -0.108 4.108 24 C -0.121 4.121 25 C 0.045 3.955 26 N -0.222 5.222 27 C 0.201 3.799 28 O -0.267 6.267 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.225 0.775 38 H 0.167 0.833 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.270 0.730 44 H 0.035 0.965 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.831 -25.034 1.655 25.380 hybrid contribution -0.854 0.866 0.259 1.244 sum 2.976 -24.168 1.914 24.426 Atomic orbital electron populations 1.70048 1.05252 1.25394 1.54164 1.25022 0.95305 0.98423 1.00922 0.86218 0.79557 0.83798 0.77237 1.20123 1.21523 1.21744 1.19266 0.92849 0.84636 1.41137 0.91472 1.44009 1.35592 1.01033 1.50379 1.20846 0.88553 0.98637 0.87866 1.22180 1.00512 0.95091 1.00145 1.21683 0.96634 0.98732 0.98257 1.21809 0.98002 0.80791 0.97265 0.89314 1.46064 1.08762 1.16099 1.65943 1.17756 0.83224 0.86190 0.78740 1.90860 1.46415 1.48603 1.52586 1.21301 0.94451 0.96676 1.07544 1.21980 0.99240 0.90744 0.91224 1.18778 0.94965 0.95278 1.03466 1.21056 0.98839 0.92458 0.97719 1.20942 0.96444 0.97395 0.99538 1.20991 0.92862 0.99272 0.97674 1.20839 1.00766 0.90792 0.99703 1.18681 0.87989 0.93155 0.95668 1.67575 1.36535 1.01454 1.16636 1.19206 0.84917 0.87006 0.88744 1.84707 1.54077 1.45697 1.42213 1.21177 0.97930 0.86843 0.92535 0.93713 0.89213 0.96294 0.92349 0.92664 0.93041 0.92244 0.77478 0.83341 0.84760 0.85206 0.85023 0.84415 0.73036 0.96530 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 8 H 0.07 1.89 7.89 -52.48 -0.41 1.48 16 9 N -0.59 -14.75 3.00 -172.31 -0.52 -15.26 16 10 C 0.17 3.88 5.31 -3.71 -0.02 3.86 16 11 C -0.14 -2.54 6.08 -26.61 -0.16 -2.70 16 12 C -0.11 -1.78 5.35 -26.69 -0.14 -1.93 16 13 C 0.13 2.20 2.60 -67.81 -0.18 2.03 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 15 N -0.72 -9.96 5.03 -54.73 -0.28 -10.23 16 16 C 0.56 8.58 7.73 -12.46 -0.10 8.49 16 17 O -0.51 -9.87 14.81 -16.68 -0.25 -10.12 16 18 C -0.19 -2.47 5.90 -104.71 -0.62 -3.09 16 19 C -0.01 -0.05 9.38 -38.46 -0.36 -0.42 16 20 C -0.12 -1.18 5.74 -106.80 -0.61 -1.79 16 21 C -0.08 -0.56 9.77 -39.46 -0.39 -0.95 16 22 C -0.13 -0.74 9.96 -39.93 -0.40 -1.13 16 23 C -0.09 -0.55 9.94 -39.93 -0.40 -0.95 16 24 C -0.10 -0.88 9.97 -39.47 -0.39 -1.28 16 25 C 0.17 1.88 6.61 -84.79 -0.56 1.32 16 26 N -0.50 -6.69 10.33 -10.76 -0.11 -6.80 16 27 C 0.40 5.47 7.74 -16.60 -0.13 5.34 16 28 O -0.46 -6.50 11.59 -39.89 -0.46 -6.96 16 29 C 0.14 3.04 6.09 -3.71 -0.02 3.02 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 31 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.39 4.01 6.67 -40.82 -0.27 3.73 16 38 H 0.15 0.94 6.47 -52.49 -0.34 0.60 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.41 4.20 9.06 45.56 0.41 4.61 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.34 7.93 -51.93 -0.41 0.92 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -34.87 370.55 -10.24 -45.10 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.10 Total: 4.56 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -4.70 Total: 2.66 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.28 Total: -57.80 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.71 Total: -17.08 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.87 -10.24 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008115486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.769 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds